BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58460.2
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324326 jgi|Araly1|324326|fgenesh1_pm.C_scaffold_5001870 2006 0.0
> Ahg324326 jgi|Araly1|324326|fgenesh1_pm.C_scaffold_5001870
Length=1212
Score = 2006 bits (1086), Expect = 0.0
Identities = 1155/1189 (97%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 153 GCTGGGGTTCAAACTCGAGTTGGACAGTGGTGGAATGCCATACCTTTCCTCACGTCATCG 212
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 25 GCTGGGGTTCAAACTAGAGTTGGACAATGGTGGAATGCCATACCGTTCCTCACGTCATCG 84
Query 213 GTGGTGGTAGTTTGTGGGGTCATTTACCTGATATGCCTCTTAACTGGATATGACACTTTT 272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GTGGTGGTAGTTTGTGGGGTCATTTACCTGATATGCCTCTTAACTGGATATGACACTTTC 144
Query 273 TATGAAGTATGCTTCTTACCCTCGGCAATCATATCGAGGTTCCAAGTTTATAGGTTTTAT 332
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 145 TATGAAGTATGCTTCTTACCCTCGGCAATTGTATCGAGGTTCCAAGTTTATAGGTTTTAT 204
Query 333 ACAGCCATTATTTTCCATGGATCACTGCTTCATGTTCTGTTCAACATGATGGCATTGGTT 392
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ACTGCCATTATTTTCCATGGATCACTGCTTCATGTTCTGTTCAACATGATGGCATTGGTT 264
Query 393 CCTATGGGCTCTGAGCTGGAGAGAATCATGGGATCTGTCCGTTTGCTTTACCTAACAGTT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 265 CCTATGGGCTCTGAGCTGGAGAGAATCATGGGATCTGTCCGTTTGCTTTACCTGACAATT 324
Query 453 TTGCTGGCAACGACCAATGCCGTATTGCATCTTCTTATAGCATCCTTGGCGGGATATAAT 512
||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 325 TTGCTGGCAACGACCAATGCCATATTGCATCTTATTATAGCATCCTTGGCCGGATATAAT 384
Query 513 CCCTTCTACCAATATGATCATCTCATGAATGAATGCGCCATTGGATTTTCTGGAATCTTG 572
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 385 CCCTTCTACCAATATGATCATCTCATGAATGAATGTGCCATTGGATTTTCTGGAATCTTG 444
Query 573 TTTTCTATGATTGTCATAGAGACAAGTCTCAGTGGAGTTACCTCTAGAAGTGTGTTTGGT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTTTCTATGATTGTCATAGAGACAAGTCTCAGTGGAGTTACCTCTAGAAGTGTGTTTGGT 504
Query 633 CTCTTCAACGTTCCCGCTAAACTGTATCCGTGGATCTTACTAATAGTATTCCAGCTTCTC 692
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 505 CTCTTCAACGTTCCCGCTAAACTGTATCCGTGGATCTTATTAATAGTATTCCAGCTTCTC 564
Query 693 ATGACAAATGTTTCACTGCTTGGGCATCTATGCGGCATCCTGTCTGGATTTTCATATTCT 752
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 565 ATGACAAATGTTTCACTGCTTGGGCACCTATGCGGCATCCTGTCTGGATTTTCATATTCT 624
Query 753 TATGGCCTCTTCAATTTCTTGATGCCTGGCTCTTCATTTTTTACCACCATTGAGTCAGCC 812
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 625 TATGGCCTCTTCAATTTCTTGATGCCTGGCTCTTCAGTTTTTACCACCATTGAGTCAGCC 684
Query 813 TCCTGGATGTCTAGCTTCATTAGGCGACCCAAGTTCATTATGTGTACTGGCGGGAATCCT 872
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 685 TCCTGGATGTCTAGCTTCGTAAGGCGACCCAAGTTCATTATGTGTACTGGCGGGAATCCT 744
Query 873 TCCAGCTATATTCCCACTTATTCTGCACAAAACACAACATCCAGTGGTTTCTCTACAGGA 932
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TCCAGCTACATCCCCACTTATTCTGCACAAAACACAACATCCAGTGGTTTCTCTACAGGA 804
Query 933 AATGCTTGGAGATCCTTGTCTTCATGGTTGCCACAGAGGGAAGCATCTAATCAGTCTTCT 992
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 805 AATGCTTGGAGATCCTTGTCTTCATGGTTGCCACAGAGGGAAGCATCCAATCAGTCTTCT 864
Query 993 GAGGACAGTAGATTTCCGGGGAGAGGTAGAACTCTTAGCACTGCCCGAGATCCTACTGCT 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 865 GAGGACAGTAGATTTCCGGGGAGAGGTAGAACTCTTAGCACTGCCCGAGATCCAACTGCT 924
Query 1053 CCAGCTGGAGAAACAGACCCAAACCTCCATGCTAGACTGCTGGAAGATAGCAGCTCTCCA 1112
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 925 CCAGCGGGAGAAACAGACCCAAATCTCCATGCTAGACTGCTGGAAGATAGCAGCTCTCCA 984
Query 1113 GACCGCCTTTCTGATGCAACTGTCAACACCGTGGCAGATTCAAGACAAGCGCCAATAGCT 1172
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 985 GACCGCCTTTCTGATGCAACTGTCAACACCATGGCAGATTCAAGACAAGTGCCAATAGCT 1044
Query 1173 AATGCAGCAGTCCTGCCCCAATCCCAGGGTCGTGTTGCTGCTTCC-GAAGAACAAATCCA 1231
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1045 AATGCAGCAATCCTGCCCCAATCCCAGGGTCGTGTTGCTGCT-CCAGAAGAACAAATCCA 1103
Query 1232 GAAACTCGTAGCCATGGGCTTTGACAGGACACAAGTGGAAGTGGCGCTTGCTGCTGCCGA 1291
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1104 GAAACTCGTTGCCATGGGCTTCGATAGGACACAAGTGGAAGTGGCGCTTGCTGCTGCCGA 1163
Query 1292 CGATGATCTCACCGTAGCAGTGGAGATCCTAATGAGCCAACAGGCTTAA 1340
||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1164 CGATGATCTAACCGTAGCAGTGGAGATCCTAATGAGCCAACAGGCATAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5