BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58470.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938840 jgi|Araly1|938840|scaffold_503031.1 1249 0.0
> Ahg938840 jgi|Araly1|938840|scaffold_503031.1
Length=792
Score = 1249 bits (676), Expect = 0.0
Identities = 737/767 (96%), Gaps = 2/767 (0%)
Strand=Plus/Plus
Query 48 GACGCCGAAGCTTAAATGGAAAAAGAAGATGAGCTCCAGAAGTTAAACGGTCAAGTTTCA 107
|||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 6 GACGCCGAAGCTCAAATGGAAAAAGAACATGAGCTCCAGAAGCTAAACAGTCAAGTTTCA 65
Query 108 GCTCCACGAGACGGAGATGTAGAAGATGACGATCCACTAGTGTTGAGTTCTCAAGCTTTG 167
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 66 GCTCCACGAGACGGAGATGTAGAAGATGACGATCCACTAGTGTTGAGCTCTCAAGCTTTG 125
Query 168 GCGGCGCTTCGGGAATTTCTAGCAGACCAGAACAAGACTGTTGCGAGCACGCCACCGGCG 227
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 126 GCGGCGCTCCAGGAATTTCTAGCCGACCAGAACAAGACTGTTGCGAGCACGCCACCGGCG 185
Query 228 TCTTCCGTCGCCGGAGGAGAAGAATCCGATAAAGTGGAGCTGGTTACGGAGGATTGGAGA 287
|||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 186 TCTTCCGTCGCCGGAGAAGAGGCTTCCGATAAAGTGGAGCTGGTTACGGAGGATTGGAGA 245
Query 288 CTCAGCCAGTTCTGGTACGAACCTGAAACTGCAGAGACTGTAGCAGATGAAGTGGTCACT 347
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 246 CTCAGCCAGTTCTGGTACGAACCTGAAACCGCAGAGACTGTAGCAGAGGAAGTGGTCACT 305
Query 348 CTCTCTCA-AAGAATTCCAGGCTGCAGAGTCGCTTGCATTGCTTGCCCTACTCTCTACGT 406
|||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTCTCT-AGTAGATTTTCAGGCTGCAGAGTCGCTTGCATTGCTTGCCCTACTCTCTACGT 364
Query 407 TTATCTCAAGAAAAGAGATCCTAGTCTTCAGGTGCAATTGCTGGAGTACGATATGAGATT 466
||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 365 TTATCTCAAGAAAAGGGATCCGAGTCTTGAGGTGCAATTGCTTGAGTACGATATGAGATT 424
Query 467 CGAGAGATATGGAAAAGAGTTCACTTTCTATGATTACAACGAACCAGAAGATCTGCCGCT 526
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CGAGAGATATGGAAATGAGTTCACTTTCTATGATTACAACGAACCAGAAGATCTGCCGCT 484
Query 527 TCAGCTGAAACATTGCTTCCATATAATCGTTGCAGATCCTCCCTACTTGAGTAGGGAATG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCAGCTGAAACATTGCTTCCATATAATCGTTGCAGATCCTCCCTACTTGAGTAGGGAATG 544
Query 587 CCTGGAAAGAGTTAGTCAAACAATTTTGTTCCTCGCAAGCCCAGTAGATTCATTGTTGCT 646
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 545 CCTGGAAAGAGTTAGTCAAACAATTTCATTCCTCGCAAGCCCAGTAGATTCACTGTTGCT 604
Query 647 TCTTCTCACAGGAGAGGTGCAAAGAGAACATGCAGCTGAGCTATTGGGTGTTCGCCCTTG 706
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 605 TCTTCTCACAGGAGAGGTGCAGAGAGAACATGCAGCTGAGCTATTGGGTGTTCGTCCTTG 664
Query 707 TGTGTTTAAGCCTCATCACTCTAGCAAACTCGGAAACGAGTTCCGACTGTTTATAAGTTA 766
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 665 TGTGTTTAAGCCTCATCACTCTAGCAAACTCGGAAACGAGTTCCGATTGTTTATAAGTTA 724
Query 767 TGATCCAGGTACCAGATTAGGAGGCTTGGAAGAAGACAGCTAGTTGT 813
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TGATCCAGGTACCAGATTAGGAGGCTTGGAAGAAGACAGCTAGTTGT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5