BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58500.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486299 jgi|Araly1|486299|fgenesh2_kg.5__2291__AT3G58500.1 2283 0.0
Ahg935133 jgi|Araly1|935133|scaffold_403121.1 1389 0.0
> Ahg486299 jgi|Araly1|486299|fgenesh2_kg.5__2291__AT3G58500.1
Length=1359
Score = 2283 bits (1236), Expect = 0.0
Identities = 1321/1361 (97%), Gaps = 9/1361 (1%)
Strand=Plus/Plus
Query 60 AAAAAGCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGT 60
Query 120 AACCT-TTGCCTCGTTTCTGATCTGTTTTCCGGATCCGACTTGAAGGAAAGAAGACGACG 178
||||| || |||||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 61 AACCTGTT-CCTCGTCTCTGATCTGTTTCCCGGATCCGACTAGAAGGAAAGAAGACGACG 119
Query 179 ACGCACTACCAAAAACATGGGCGCGAATTCGCTTCCAACGGATGCAACCCTCGATCTAGA 238
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TCGCACTACCAAAAAGATGGGCGCGAATTCGCTTCCGACGGATGCAACCCTCGATCTAGA 179
Query 239 TGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATT 239
Query 299 ATGTGAGAAAGCTAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTTAAAAGCCC 358
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 240 ATGTGAGAAAGCTAAGGAGATCTTGATGGATGAAAGCAACGTTCAGCCGGTTAAAAGCCC 299
Query 359 TGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTAT 359
Query 419 TGGGGGAAAGTGTCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATA 478
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGGGGAAAGTGCCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATA 419
Query 479 TTATTCTGTGGAAACTGTTACGCTGTTGGTTGGCTTGAAAGTACGGTATCCACAGCGAAT 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTATTCTGTCGAAACTGTTACGCTGTTGGTTGGCTTGAAAGTACGGTATCCACAGCGAAT 479
Query 539 CACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGA 539
Query 599 TGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGA 599
Query 659 CTATTTCCCACTGACAGCCTTGGTGGAGTCGGAAATATTCTGCCTTCACGGTGGATTATC 718
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 CTATTTTCCACTGACAGCCTTGGTGGAGTCAGAAATATTCTGCCTTCACGGTGGATTATC 659
Query 719 ACCATCCATCGAGACCCTTGACAACATTAGGAACTTTGATCGGGTTCAAGAAGTTCCACA 778
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 660 ACCATCAATCGAGACCCTTGACAACATTAGGAACTTTGATCGAGTTCAAGAAGTTCCGCA 719
Query 779 TGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGCTGGGGAAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGTTGGGGAAT 779
Query 839 CTCTCCTCGTGGTGCTGGATATACATTTGGTCAGGATATTTCGGAACAATTCAATCACAC 898
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 780 CTCTCCTCGTGGTGCCGGATATACATTTGGTCAGGACATTTCCGAACAATTCAATCACAC 839
Query 899 TAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTCGTTATGGATGGATTCAATTGGGC 958
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 840 TAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTTGTTATGGATGGATTCAACTGGGC 899
Query 959 ACACGAGCAAAAAGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAA 1018
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCACGAGCAAAAGGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAA 959
Query 1019 CATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACC 1019
Query 1079 AGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTTTGAAG 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 AGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTATGAAG 1079
Query 1139 ATACTCAGCTCCTCCTGCAGCT-T-----CCGGTTGTTGGTTTTTGAAGATCTCTGCTTA 1192
| ||||||||| |||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 1080 ACACTCAGCTCATCCTGCAGCTGTAAAGTCCGGTTGTTTGTTTTTGAAGATCTCTGCTTA 1139
Query 1193 TTCCATTTGGTTCAACGCATTTGTGTTCCAGGTTGCTTCTCTTTAAAATCAATTTAGCCC 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCATTTGGTTCAACGCATTTGTGTTCCAGGTTGCTTCTCTTTAAAATCAATTTAGCCC 1199
Query 1253 TCTCCCTTGGAATAGTGTAATATAGGCAAAGAGGTCAATGAACTTTAAAACCTCTCATGA 1312
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1200 TCTCCCGTGGAATAGTGTAATATAGGCAAAGAGGTCAATGAACTTTAAA-CCTCTCATGA 1258
Query 1313 ACATGTGTTTGGCTGAACTTATTAGCTCCCTTCTGCATCAGAATCTGTTTATTGTGAGAT 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACATGTGTTTGGCTGAACTTATTAGCTCCCTTCTGCATCAGAATCTGTTTATTGTGAGAT 1318
Query 1373 ATTTTTTCGATTTATTTCACGTAATTTTTCCCTTTTGTTCC 1413
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATTATTTCGATTTATTTCACGTAATTTTTCCCTTTTGTTCC 1359
> Ahg935133 jgi|Araly1|935133|scaffold_403121.1
Length=1100
Score = 1389 bits (752), Expect = 0.0
Identities = 969/1073 (90%), Gaps = 18/1073 (2%)
Strand=Plus/Plus
Query 67 GAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGAAACCTTT 126
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACC-TA 59
Query 127 G-CCTCGTTT-CTGATCTGTTTTCCGGATCCGACTTGAAGGAAAGAAGACGACGACGCAC 184
| ||| |||| ||||||||||||||||||| ||| | | | || || || |||| |
Sbjct 60 GTCCT-GTTTCCTGATCTGTTTTCCGGATCGGAC--G-A-G--AG--GA-GA-GACGAAG 108
Query 185 TACCAAAAACATGGGCGCGAATTCGCTTCCAACGGATGCAACCCTCGATCTAGATGAGCA 244
|| | ||| |||||||||||||| |||| ||||| |||||| | ||||| ||||||||
Sbjct 109 TAAC-GAAA-ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCA 166
Query 245 GATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATTATGTGA 304
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 167 GATCTCGCAGCTTATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGA 226
Query 305 GAAAGCTAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTTAAAAGCCCTGTGAC 364
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 227 GAAAGCCAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGAC 286
Query 365 AATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATTGGGGG 424
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 287 AATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGG 346
Query 425 AAAGTGTCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATATTATTC 484
|| ||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 347 AATGTGCCCTGATACCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTC 406
Query 485 TGTGGAAACTGTTACGCTGTTGGTTGGCTTGAAAG-TACGGTATCCACAGCGAATCACTA 543
||| ||||||||||||||||| || | ||| |||| | || ||||| |||||||||||||
Sbjct 407 TGTTGAAACTGTTACGCTGTTAGTCGCCTT-AAAGATGCGATATCCTCAGCGAATCACTA 465
Query 544 TTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAAT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAAT 525
Query 604 GTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGACTATT 663
||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 526 GTCTGCGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATT 585
Query 664 TCCCACTGACAGCCTTGGTGGAGTCGGAAATATTCTGCCTTCACGGTGGATTATCACCAT 723
| || |||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 586 TTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCAT 645
Query 724 CCATCGAGACCCTTGACAACATTAGGAACTTTGATCGGGTTCAAGAAGTTCCACATGAAG 783
| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct 646 CTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAG 705
Query 784 GGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGCTGGGGAATCTCTC 843
|||| ||||||||||||||||||||||| || |||||| ||||||| ||||| |||||||
Sbjct 706 GGCCAATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTC 765
Query 844 CTCGTGGTGCTGGATATACATTTGGTCAGGATATTTCGGAACAATTCAATCACACTAACA 903
|||| ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||
Sbjct 766 CTCGAGGTGCCGGATATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACA 825
Query 904 ACTTAAAGCTGATCGCCCGAGCGCATCAGCTCGTTATGGATGGATTCAATTGGGCACACG 963
|||||||||||||||||||||| || ||| | ||||||||||||| ||| ||||| ||||
Sbjct 826 ACTTAAAGCTGATCGCCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACG 885
Query 964 AGCAAAAAGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAACATGG 1023
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 886 AGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGG 945
Query 1024 CCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACCAGCAC 1083
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 946 CCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCAC 1005
Query 1084 CGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTTTGA 1136
||||||||||||| |||||||| ||||||||||| || |||||||| || |||
Sbjct 1006 CGAGGAGAGGAGAACCAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5