BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58520.1
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486304 jgi|Araly1|486304|fgenesh2_kg.5__2296__AT3G58520.1 2351 0.0
> Ahg486304 jgi|Araly1|486304|fgenesh2_kg.5__2296__AT3G58520.1
Length=1591
Score = 2351 bits (1273), Expect = 0.0
Identities = 1426/1498 (95%), Gaps = 17/1498 (1%)
Strand=Plus/Plus
Query 133 AACACTAAACCCTAAACCCATTTTGCAC-TCTCAATTACAGATCATCCA-CA---TTTCG 187
||||||||||||||||| |||||||||| || |||||| |||||||||| || |||||
Sbjct 98 AACACTAAACCCTAAACACATTTTGCACTTC-CAATTAGAGATCATCCAGCAGGTTTTCG 156
Query 188 CGCTTTCGTCAAATCTCTTTAGATGTTCGTCAAATCACAAAGCTTTCTCTTTTCGGTGAG 247
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 157 CATTTTCGTCAAATCTCTTTAGATGTTCGTCAAATCCCAAAGCTTTCTCTTTTCGGTGAG 216
Query 248 TAAGCTGTTT--C-ACCAGCATCAACAATGGCGAGGAATGGGTGCAATGACAAAGGTGAG 304
|||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TAAGCTGTTTCACTACCATCATCAACAATGGCGAGGAATGGGTGCAATGACAAAGGTGAG 276
Query 305 ACTGAAGTGGGTGAAGAACAAGAACCTGGATCACGTCATTGA-TACTGAGACCGATCTCA 363
||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 277 ACTGAAGTGGGTGAAGAACAAGAACTTGGATCACGTCATTGATTAC-GAGACCGATCTCA 335
Query 364 AAGCAGCTTGTATCCTCAAAGACGCCATAAAGCGATCTCCCACTGGTTTCCTCACCGCAA 423
|||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 336 AAGCAGCTTGCATTCTCAAAGACGCCATAAAGCGATCGCCCACCGGTTTCCTCACCGCAA 395
Query 424 AATCCGTCGCCGATTGGCAAAAACTCCTTGGTCTCACCGTCCCTGTTCTCCGCTTCTTGC 483
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 396 AATCCGTCGCCGATTGGCAAAAACTCCTTGGACTCACCGTCCCTGTTCTCCGCTTCTTGC 455
Query 484 GCAGGTATCCGACTCTGTTTCACGAATTTCCTCATGCTCGTTACGCAAGCTTACCATGTT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GCAGGTATCCGACTCTGTTTCACGAATTTCCTCATGCTCGTTACGCAAGCTTACCATGTT 515
Query 544 TCAAGCTAACGGACACAGCACTAATGCTTGACTCACAAGAAGAGATTATTCATCAAAGCC 603
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 516 TCAAGCTAACGGACACAGCACTAATGCTTGACTCACAGGAAGAGATTATTCATCAAAGCC 575
Query 604 ACGAGGCTGATACAGTGGAGAGACTCTGTAGAGTTCTGATGATGATGAGATCAAAAACTG 663
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 576 ACGAGGCTGATACAGTGGAGAGACTCTGTAGAGTTCTTATGATGATGAGAACAAAAACTG 635
Query 664 TCTCTCTTAGATCACTACATTCTCTCAAATTCGATCTCGGTTTACCCGATAACTACGAAA 723
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 636 TCTCTCTCAGATCACTGCATTCTCTCAAATTCGATCTCGGTTTACCTGATAACTACGAAA 695
Query 724 AGACGCTAGTCATGAAATACCCTGATCATTTCTGCTTCGTCAAGGCTTCTAATGGTAACC 783
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGACACTAGTCATGAAATACCCTGATCATTTCTGCTTCGTCAAGGCTTCTAATGGTAACC 755
Query 784 CGTGTTTAAAGCTTGTAAAATGGCGTGATGAGTTCGCATTCTCGGCGCTGCAGAAGCGAA 843
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 756 CGTGTTTAAAGCTTGTAAAATGGCGTGACGAATTCGCATTCTCGGCGCTGCAGAAGCGAA 815
Query 844 ACGAGGACAATGATGTTTCCGGGGAGGAGTCTAGATACCGCGAGTTCAAGAGAGGTCAGT 903
|||||||||||| |||| |||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 816 ACGAGGACAATGGTGTTACCGGGGAGGATTCTAGTTACCGCGAGTTCAAAAGAGGTCAGT 875
Query 904 CTACGTTGACTTTTCCTATGAGTTTCCCTAGAGGATATGGAGCACAGAAGAAGGTCAAAG 963
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CTACGTTGACTTTCCCTATGAGTTTCCCTAGAGGATATGGAGCACAGAAGAAGGTCAAAG 935
Query 964 CATGGATGGATGAGTTTCAAAAACTTCCCTACATATCTCCTTACGATGACCCGAGTAACA 1023
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 936 CATGGATGGATGAGTTTCAAAAACTTCCCTACATATCTCCTTACGATGACTCGAGTAACA 995
Query 1024 TTGATCCGGAAAGCGATCTCATGGAGAAACGAGCTGTGGCTGTTTTGCACGAGCTCTTGA 1083
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 996 TTGACCCGGAAAGCGATCTTATGGAGAAACGAGCTGTGGGTGTTTTGCACGAGCTCTTGA 1055
Query 1084 GCTTGACTATCCACAAGAAAACCAAGAGGAACTACTTGAGAAGCATGAGAGCGGAGCTCA 1143
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GCTTGACTATCCACAAGAAAACCAAGAGGAACTACTTGAGAAGCATGAGAGCGGAGCTCG 1115
Query 1144 ACATTCCGCACAAGTTCACTCGTCTATTCACGCGATACCCCGGCATTTTCTACCTCTCAT 1203
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1116 ACATTCCGCATAAGTTCACTCGTCTATTCACGCGATACCCCGGCATTTTTTACCTCTCAT 1175
Query 1204 TGAAGTGTAAGACAACAACTGTGATCCTCAAAGAAGGGTATCGCCGAGGAAAACTAGTGG 1263
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1176 TGAAGTGTAAGACAACAACTGTGATCCTCAAAGAAGGGTATCGTCGAGGAAAACTAGTGA 1235
Query 1264 ATCCGCATCCTCTCACTCGTCTTCGAGATAAGTTTTATCATGTGATGAGAACAGGGTTTC 1323
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1236 ATCCGCATCCTCTCACTCGTCTTCGAGATAAGTTCTATCATGTGATGAGAACAGGGTTTC 1295
Query 1324 TTTATCGGGCGAGAGGGCTAGGCATGGTCTCTAAAGAGGAACTTTTGCTTGATAGGCCAG 1383
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TTTACCGGGCTAGAGGGCTAGGCATGGTCTCTAAAGAGGAACTTTTGCTTGATAGGCCAG 1355
Query 1384 AGGATGACCTtgaggaagaaggctctgaagaagaagagattgtggaaggaagtgagcttg 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AGGATGACCTTGAGGAAGAAGGCTCTGAAGAAGAAGAGATTGTGGAAGGAAGTGAGCTTG 1415
Query 1444 aagaagattctgaagctgaaTAGCAA-TAGTTGTTGAATCTAATTGTTGTAT-GTTA-AT 1500
||||||||||||||| |||||||||| |||||||||||||||| ||| | ||| ||
Sbjct 1416 AAGAAGATTCTGAAGATGAATAGCAAATAGTTGTTGAATCTAAATGTCAAAAAGTTTTAT 1475
Query 1501 TCACACAGAGCAACAATTTATGTACCTGCATTTTATCTTTTTGAAGTAACGGAACGGAGT 1560
||| | ||||||||||||||| || ||||||||||| |||||||||| |||| |||||
Sbjct 1476 TCATAAAGAGCAACAATTTATA-AC-TGCATTTTATCCTTTTGAAGTAGTGGAAAGGAGT 1533
Query 1561 TTAAACAATGTAAGCACAAAGTCCTTAAAATG-ATATAAAGAGAGATTGTATTTCACC 1617
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1534 TTAAACTATGTAAGCACAAAGTCCTTAAAAAGGATATAAAGAGAGATTGTATTTCACC 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60601579795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5