BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58530.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486305 jgi|Araly1|486305|fgenesh2_kg.5__2297__AT3G58530.1 1799 0.0
> Ahg486305 jgi|Araly1|486305|fgenesh2_kg.5__2297__AT3G58530.1
Length=1304
Score = 1799 bits (974), Expect = 0.0
Identities = 1109/1174 (94%), Gaps = 10/1174 (1%)
Strand=Plus/Plus
Query 161 TAGTCCTGAGGCTGATTGGTAGAGGAAATTGGAAAAGCTTGGATTGA-AAACTATGGAAG 219
||||||||||||||||||||||| ||| | | |||||||||||||| || | |||||||
Sbjct 101 TAGTCCTGAGGCTGATTGGTAGAAAAAAGTCGCAAAGCTTGGATTGAGAATC-ATGGAAG 159
Query 220 CGAAGAAAGTGACAGAAGAGGAAGAAGAGACGTGGAGGAGAGAGATAGTAACAAGCGTTA 279
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 160 CGAAGAAAGTGACAGAAGAGGAAGAAGAGTCATGGAGGAGAGAGATAGTAACAAGCGTTA 219
Query 280 TGAGATTAGTGAGTACGAGATTGCCTCAGACAGATCTAATTTCTCTACTTCTGGTTAGCC 339
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 220 TGAGATTAGTGAGCACGAGATTGCCTCAGACAGATCTAATTTCTCTACTTCTCGTTAGCC 279
Query 340 CATGGCTTTATCGCACCCTCATCTCCTATCCTTCAATCTGGCTGACCATCAATTTGCGCG 399
| |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||
Sbjct 280 CTTGGCTTTATCGCACCCTCATCTCCTACCCTTCAATCTGGCTGAACATCGATTTGCGCG 339
Query 400 AGATGACCAATGCAGGGGATCGGCTTTTAGCTGCTCTGTCCTTGCCAAGATATCGACAAG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 340 AGATGACCAATGCAGGGGATCGGCTTTTAGCTGCTCTGTCCTTGCCAAGATATAGACAAT 399
Query 460 TGAAGCATATCAATCTTGAATTTGCCCAGGGTGTTGTGGACAGTCATCTTAAACTTGTGA 519
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 400 TGAAGCATATCAATCTTGAATTTGCCCAGGGTGTTGTGGACAGTCATCTCAAACTTGTGA 459
Query 520 AAACCGAGTGCCCGGATGCTCTTTTGAGTCTAGAATGGTTGAATCTGAACGTGTGCCAAA 579
|| |||||||||||||||||||||| ||| ||||||| ||||||||||| | ||||||||
Sbjct 460 AAGCCGAGTGCCCGGATGCTCTTTTAAGTTTAGAATGCTTGAATCTGAATGGGTGCCAAA 519
Query 580 AGATATCAGACAATGGAATCGAAGCTATAACTAGCATATGTCCAAAGTTAAAAGTTTTCT 639
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 520 AGATATCAGACAATGGAATTGAAGCGATAACTAGCATATGTCCAAAGTTAAAAGTTTTCT 579
Query 640 CTATCTACTGGAACGTAAGGGTGACCGATGCTGGCATTAGAAATCTAGTGAAGAATTGCA 699
|||||||||||||||||||||| || ||||||||||||||| || ||||||| |||||||
Sbjct 580 CTATCTACTGGAACGTAAGGGTCACTGATGCTGGCATTAGACATTTAGTGAAAAATTGCA 639
Query 700 GACATATCACTGATTTGAACTTAAGTGGCTGCAAGAGCCTAACGGACAAAAGTATGCAAC 759
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 640 GACATATCATTGATTTGAACTTAAGTGGCTGCAAGAGTCTAACGGACAAAAGTATGCAGC 699
Query 760 TAGTAGCTGAAAGTTATCCAGACTTAGAGTCACTGAATATCACTAGGTGTGTTAAGATTA 819
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TAGTAGCTGAAAGTTATCAAGACTTAGAGTCACTGAATATCACTAGGTGTGTTAAGATTA 759
Query 820 CAGATGATGGATTACTTCAAGTGCTACAAAAATGTTTCTCTCTCCAGACCTTAAATCTCT 879
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 760 CAGATGATGGATTACTTCAAGTGCTACAAAAATGTTCCTCTCTCCAGACCTTAAATCTCT 819
Query 880 ATGCTCTTTCAGGCTTCACAGACAAAGCCTACATGAAGATATCACTTTTAGCTGACCTAA 939
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 820 ATGCTCTTTCAGGCTTCACAGACAAAGCCTACAAGAAGATATCACTTTTACCTGACCTAA 879
Query 940 GGTTCTTAGATATATGTGGCGCTCAGAATATATCTGACGAGGGGATTGGTCATATAGCTA 999
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 880 GGTTCTTAGATCTATGTGGCGCTCAGAATTTATCTGACGAGGGGCTTGGTCATATAGCTA 939
Query 1000 AATGCAACAAGTTAGAGTCTCTCAACTTGACATGGTGTGTGCGTATCACAGATGCAGGTG 1059
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AATGCAACAAACTAGAGTCTCTCAACTTGACATGGTGTGTGCGTATCACAGATGCAGGTG 999
Query 1060 TGAATA-CCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAGCTTGTTTGGGATAGTT 1118
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1000 TGA-TAACCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAGCTTGTTTGGAATAGTT 1058
Query 1119 GGGGTGACTGACAGATGTCTGGAGACCCTTTCGCAGACATGCTCGACTACACTCACCACT 1178
||||||| ||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1059 GGGGTGAGTGATAGATGTCTGGAGACCCTCTCGCAGACATGCTCTACTACGCTCACCACT 1118
Query 1179 CTTGATGTCAATGGCTGCACCGGCATCAAGAGACGAAGCCGTGAAGAGTTGCTTCAGATG 1238
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1119 CTTGACGTCAATGGCTGCATCGGCATCAAGAGACGAAGCCATGAAGAGTTGCTTCAGATG 1178
Query 1239 TTCCCTCGTTTGACATGCTTCAAAGTACACAGCTGAAATTTGCTCATATAAATTAGAGGA 1298
||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1179 TTCCCTCGTCTGACATGCTTCAAAGTACACAGCTAAAATTTGCTCATA-A--TTAGAGGA 1235
Query 1299 ---CTCTCAACAAATGTCTATCCTTCAGTTATAA 1329
|||||||||||||||||| |||| |||||||
Sbjct 1236 GGACTCTCAACAAATGTCTATTCTTCGGTTATAA 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5