BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58550.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938849 jgi|Araly1|938849|scaffold_503040.1 887 0.0
> Ahg938849 jgi|Araly1|938849|scaffold_503040.1
Length=577
Score = 887 bits (480), Expect = 0.0
Identities = 543/574 (95%), Gaps = 1/574 (0%)
Strand=Plus/Plus
Query 32 TTCTTACTCTGCTGCATTAACTGATGGCTAGATTCATGGCTTACAATCAAAATCCACAAA 91
||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1 TTCTTACTCTGCTGCATAAACTGATGGCTAGATTCATGGGTTACAGTCAAAATCGACAAA 60
Query 92 TGTTGGCTCTATGCATAACAGTAGCAGTAATGTTCCTTGGTGTGAGATCAGAATTGAGTC 151
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TGTTGGCTCTATGCATAACAGTAGCAGTAATGTTTCTTGGTGTGAGATCAGAATTGAGTC 120
Query 152 AGGATATAAAGGGATGTCAGGATGCGATGTCTGATCTCTACTCTTGTCTTCCTTTTGTCA 211
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 AGGACATAAAGGGATGTCAGGAGGCCATGTCTGATCTCTACTCTTGTCTTCCTTTTGTCT 180
Query 212 CTAACAAAGCTAAAGCACCAGACTCAACATGTTGCAGCACACTCAAGGTAAAAATAGACA 271
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 181 CTAACAAAGCTAAAGCTCCAGACTCAACATGTTGCAGCACACTTAAGGCAAAAATAGACA 240
Query 272 AAGGGCAGACCAGGAAATGTCTATGTACTCTAGTCAAAGACAGGGATGATCCTGGTTTGG 331
|||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 241 AAGGGCAGACCAAGAAATGTCTCTGTACTCTTGTCAAAGACAGGGATGATCCTGGTTTGG 300
Query 332 GGTTCAAAGTTGATGCCAACCGTGCAATGAGCCTCCCTTCCGCTTGTCATGTCCCTGCAA 391
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTCAAAGTTGATGGCAATCGTGCAATGAGCCTCCCTTCCGCTTGTCATGTCCCTGCAA 360
Query 392 ACATCTCTCAATGCCCAGATCTTCTACATCTGCTTCCAGATTCACCAGCCTCTCAAATAT 451
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 ATATCTCTCAGTGCCCAGATCTTCTACATCTGCTTCCAGATTCACCAGCCTCTCAGATAT 420
Query 452 TTAAGCAATTCACTGAATCTTCTTCTCAGACTGTTGGACATAAAGCGGTCTCCACAAGCT 511
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 421 TTAAGCAATTCAATGAATCTTCTTCTCAGAATGTTGGACATAAAGCGGTCTCCACAAGTT 480
Query 512 CAAGCATCAAAGGAAGAGACAACAAGCAATTTGGTTTAATGATGGCTGGTGCTCTCTCAA 571
|||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGCAGCAAAGGAAGAGACAAGAGGCAATTTGGTTTAATGATGGCTGGTGCTCTCTCAG 540
Query 572 TATGGTATATAATGTAAAATCCTCTGTGATCTAA 605
|||||||| || |||||| |||||||| ||||||
Sbjct 541 TATGGTATTTAGTGTAAA-TCCTCTGTAATCTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5