BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58600.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486311 jgi|Araly1|486311|fgenesh2_kg.5__2303__AT3G58600.1 1877 0.0
> Ahg486311 jgi|Araly1|486311|fgenesh2_kg.5__2303__AT3G58600.1
Length=1197
Score = 1877 bits (1016), Expect = 0.0
Identities = 1153/1215 (95%), Gaps = 25/1215 (2%)
Strand=Plus/Plus
Query 12 ACACCTAACGCGAAACCTCTACGTTTC--TTCGTCTTCGCGACTC--GTGAGATTGTTGT 67
|||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 1 ACACCTAACGCGAAACCTCTGCGTTTCGAATCGTCTTCGCGACTCGTGTGAGATTGTTGT 60
Query 68 AATCACAGTTCGGGAAAGACTTAACATTTAAGATTTACGGGTTTGTTTGATCGATTAGTC 127
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 AATCACAGTTGGGGAAAGACTTAACATTTAAGATTTACGGGTGTGTTTGATCGATTAGTC 120
Query 128 TCATCTGGG-TTTTTCTCCAAGTTAAATTCTTTGTTTCTGAGATGGATCAAGCTTCGTCT 186
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATCTGGGTTTTTTCTTCAAGTTAAATTCTTTGTTTCTGAGATGGATCAAGCTTCGTCT 180
Query 187 TCTTCGACTATGGAGGAAGACAAGAAGTCTTCCACTGATCCTGTGAATGTCGATGATAAC 246
|||| | ||||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 181 TCTT---C------GGAAGGCAAGAAATCTTTCACTGATCCTGTGACTGTCGATGATAAC 231
Query 247 GAGGAGAGAGAAGCTATAGAGATTGCTCTGTTCCAAGTGCCTGAATGCTATGTTTATTTG 306
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 232 GAGGAGAGGGAAGCTATAGAGATTGCTCTATTCCAAGTACCTGAATGCTATGTTTATTTG 291
Query 307 ATACCTCCAAGGAAAACCGCAGCTTCGTACAGAGCAGATGAGTGGGACGTGAACAAATGG 366
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 292 ATACCTCCAAGGAAAACCGCAGCTTCATACAGAGCAGATGAGTGGGACGTGAACAAATGG 351
Query 367 GCATGGGAAGGAGCTTTGAAAGTGGTGAGCAAAGGAGAAGAATGCATTATAAAACTAGTA 426
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 352 GCATGGGAAGGAGCTTTGAAAGTGGTGAGCAAAGGAGAAGAATGCATTATTAAACTTGTA 411
Query 427 GATAAAACCACAGGGGAACTTTACGCTCAGGCATTTCTAAGAGAGGGGGAACTTCATCCT 486
|||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 412 GATAAAACCACAGGGGAACTTTACGCTCAGGCTTTTCTGCGAGAGGGTGAACTTCATCCA 471
Query 487 GTAGAAGCAGTAATCGACAGTAGCAGATATTTTGTTCTCCGTGTTGAAGAAAAGATAGAT 546
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTAGAAGCCGTAATCGACAGTAGCAGATATTTTGTTCTCCGTGTTGAAGAAAAGATAGAT 531
Query 547 GGTCGTGTTCGACATGCTTTTATCGGACTCGGATTCCGGGAAAGAACAGAAGCATATGAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGTCGTGTTCGACATGCTTTTATCGGACTCGGATTCCGGGAAAGAACAGAAGCATATGAT 591
Query 607 TTCCAAGCAGCACTACATGACCATATGAAGTATTTGAACAAGAAGAAAACAGCAGAAGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTCCAAGCAGCACTACATGACCATATGAAGTATTTGAACAAGAAGAAAACAGCAGAAGAA 651
Query 667 ATGGAACAACACTATCAGAACACTTCATCCGTTGATTACAGCTTAAAGGAAGGAGAAACC 726
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 652 ATGGAACAACACTTTCAAAACACTTCATCTGTTGATTACAGCTTAAAGGAAGGAGAAACC 711
Query 727 ATTGTTCTCCAACTCAAAAATAGAAGCGATAAAGACAGCAAGTCAAAAACGGTAGAGAAG 786
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 712 ATTGTTCTCCAGCTCAAAAATAGAAGCGATAAAGACACCAAGTCAAAAACGGTAGAGAAG 771
Query 787 AGTCTGGGCAATCTCTCGTTGGAGGATAAAGGCAAGTCAATAGAAACCACCATTCCTTCA 846
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 772 AGTCTGGGCAATCTCTCGTTGGAGGATAAGGGCAAGTCAATAGAAACCACCATTCCTTCA 831
Query 847 ATCATCCTGCCACCTCCACCTCCGGGACCGCTTTCCCCTGTCACAACTGCTCAGAAGTCC 906
||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 832 ATCATCCCACCACCGCCACCTCCTGGACCGCTTTCCCCTGTCACAACCGCTCAGAAGTCC 891
Query 907 CCGTCAAGTCTGCCGCCAAGCCTCAGCCTCCAAAGATCGTCTGAACAACAAGATTTAGAT 966
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CCGTCAAATCTGCCACCAAGCCTCAGCCTCCAAAGATCGTCTGAACAACAAGATTTAGAT 951
Query 967 ACAAAGCGagaagaagaagaagaagagaagaaagaagaCCTAAAAGCCAAAGATGGAGGG 1026
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct 952 ACAAAGCGAGAAGAAGAAGA-GAAGA-AAGAA-GA---CCTAAAAGCCAAAGATGGAGGG 1005
Query 1027 GTTGAAGATGCACCAGATGATGACTTTGGAGATTTCCAAGCTGCGGGTTGATTTAAACTT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTTGAAGATGCACCAGATGATGACTTTGGAGATTTCCAAGCTGCGGGTTGATTTAAACTT 1065
Query 1087 ATAATCTTTTTTACCATACACAAAGATCGTTTTATAAGTAATGTGACTGATCAAAGTTTG 1146
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1066 ATAATCTTTTT-ACCATACACAAAGATCGTTTTATAAGTAATG--ACTGATCAAAGTTTG 1122
Query 1147 GATTGTTTGCTACTGAGAGCTTATCTTCTGT--ACAATTCCAAAATACAAGCCTATTTCT 1204
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1123 GATTGTTTGCTACTGAGAGCTTATCTTCTGTGTACAATTCCAAAATACAAGCCTACTTCT 1182
Query 1205 CTGAACTTGTGATTA 1219
|||||||| ||||||
Sbjct 1183 CTGAACTTTTGATTA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5