BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58610.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486312 jgi|Araly1|486312|fgenesh2_kg.5__2304__AT3G58610.1 3188 0.0
> Ahg486312 jgi|Araly1|486312|fgenesh2_kg.5__2304__AT3G58610.1
Length=2060
Score = 3188 bits (1726), Expect = 0.0
Identities = 1922/2012 (96%), Gaps = 32/2012 (2%)
Strand=Plus/Plus
Query 63 TGACTCTGCGACCCTAATTTGTGAGCTCTCTTCTCTTTGCGCAGTCAATTTGCTACAACT 122
||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 31 TGAGTCTGTGACCCTAATTTCAGAGCTCTCTTCTCTTTGCGCAGTCAATTTGCTACAACT 90
Query 123 TAGAAAATGGCGGCGGCTACTTCATCCATCGCTCCTTCTCTTTCATGCCCATCTCCTTCT 182
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GAGAAAATGGCGGCTGCGACTTCATCCATCGCTCCTTCTCTTTCATGCCCATCTCCTTCT 150
Query 183 TCTTCATCCAAAACCCTTTGGTCTTCCAAAGCCAGAACCTTGGCTCTACCCAATATCGGT 242
||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 151 TCTTCCTCCAAAACCCTTAGGTCTTCGAAAGCCAGAACCTTGGCTCTTCCCAATATCGGT 210
Query 243 TTCCTCTCGTCTTCTTCCAAGTCTCTGAGGTCGCTTACTGCCACCGTCGCTGG-AA---- 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 211 TTCCTCTCGTCTTCTTCCAAGTCTCTGAGGTCGCTTACTGCCACCGTCGCTGGAAATGGT 270
Query 298 A-TGG---CGCCACTGGATCCTCCCTTGCCGCTCGCATGGTTTCTTCGTCTGCGGTCAAA 353
| ||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 271 ATTGGTTCCGCCACTGGATCCTCCCTTGCCGCTCGTATGGTTTCGTCGTCGGCGGTCAAA 330
Query 354 GCCCCTGTTTCTCTCGATTTTGAGACATCTGTCTTCAAAAAGGAGAAAGTTTCTCTTGCT 413
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 331 GCCCCTGTTTCTCTCGATTTCGAGACATCTGTCTTCAAAAAGGAGAAAGTTTCTCTTGCT 390
Query 414 GGTTACGAAGAGTACATTGTGAGAGGAGGAAGAGACTTGTTCAAGCATCTCCCAGATGCT 473
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 391 GGTTATGAAGAGTACATTGTGAGAGGAGGAAGGGATTTGTTCAAGCATCTCCCAGATGCT 450
Query 474 TTCAAGGGGATTAAGCAGATTGGTGTGATTGGCTGGGGATCTCAGGGACCTGCCCAGGCT 533
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 451 TTCAAGGGGATTAAGCAGATAGGTGTTATTGGCTGGGGATCTCAGGGACCTGCCCAAGCT 510
Query 534 CAGAATTTAAGGGATTCACTTGTGGAGGCAAAGTCTGACATTGTTGTCAAGATTGGTCTC 593
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 511 CAGAATTTAAGAGATTCACTTGTGGAGGCAAAGTCTGACATTGTTGTCAAGATTGGGCTC 570
Query 594 AGAAAAGGGTCTCGCTCATTTGAGGAGGCACGTGCTGCTGGCTTCACTGAAGAAAGTGGT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AGAAAAGGGTCTCGCTCATTTGAGGAGGCACGTGCTGCTGGCTTCACTGAAGAAAGTGGT 630
Query 654 ACTTTGGGTGATATATGGGAAACTATCGCTGGCAGTGATCTTGTATTGCTTTTGATCTCT 713
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 631 ACTTTGGGTGATATATGGGAAACTATCTCTGGCAGCGATCTTGTATTGCTTTTGATCTCT 690
Query 714 GATGCTGCTCAAGCTGATAACTATGAGAAAATATTCTCTCACATGAAGCCAAACAGCATT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GATGCTGCTCAAGCTGATAACTATGAGAAAATATTCTCTCACATGAAGCCAAACAGCATT 750
Query 774 CTTGGTTTATCACACGGGTTTCTACTAGGGCATTTACAGTCCTCGGGACTCGATTTCCCA 833
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 751 CTCGGTTTATCACACGGGTTTCTACTAGGGCATTTACAGTCCTCAGGACTCGATTTCCCA 810
Query 834 AAGAACATCAGTGTGGTCGCTGTATGCCCTAAGGGAATGGGTCCTTCTGTGAGGAGGCTT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AAGAACATCAGTGTGGTCGCTGTATGCCCTAAGGGAATGGGTCCTTCTGTGAGGAGGCTT 870
Query 894 TACGTCCAAGGAAAAGAAATTAACGGTGCTGGAATCAACGCCAGTTTTGCAGTCCACCAG 953
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 871 TACGTCCAAGGAAAAGAAATCAACGGTGCTGGAATCAACGCCAGTTTTGCAGTCCACCAG 930
Query 954 GATGTTGACGGTAGAGCCGCCGATGTTGCATTGGGATGGTCAGTAGCACTTGGTTCTCCG 1013
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 931 GATGTTGATGGTAGAGCCGCCGATGTTGCACTGGGATGGTCAGTAGCACTTGGTTCTCCT 990
Query 1014 TTTACTTTTGCTACTACTCTTGAACAGGAGTACAGGAGTGACATCTTTGGAGAAAGAGGA 1073
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 991 TTTACTTTTGCTACTACTCTTGAACAAGAGTACAGGAGTGACATCTTTGGAGAAAGAGGA 1050
Query 1074 ATTTTGCTTGGTGCTGTTCACGGAATCGTGGAGTCTCTGTTTAGAAGATACACCGAAAAT 1133
|||||||||||||| ||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 1051 ATTTTGCTTGGTGCGGTTCACGGAATTGTGGAGTCTCTGTTTAGAAGGTATACTGAAAAT 1110
Query 1134 GGGATGAGTGAAGACTTGGCTTACAAGAACACAGTAGAATGCATCACAGGAACAATTTCA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGGATGAGTGAAGACTTGGCTTACAAGAACACAGTAGAATGCATCACAGGAACAATTTCG 1170
Query 1194 AGGACTATCTCTACCCAGGGAATGTTGGCTGTGTACAACTCCTTGTCTGAAGAAGGTAAA 1253
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1171 AGAACTATCTCTACCCAGGGAATGTTGGCTGTTTACAACTCCTTGTCTGAAGAAGGTAAA 1230
Query 1254 AAAGATTTTGAGACTGCATACAGCGCATCCTTCTATCCTTGTATGGAGATTCTCTATGAA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAAGATTTTGAGACTGCATACAGCGCATCCTTCTATCCTTGTATGGAGATTCTCTATGAA 1290
Query 1314 TGTTACGAGGATGTACAAAGTGGCAGCGAAATCCGAAGTGTTGTCTTAGCCGGTCGTCGC 1373
||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1291 TGTTATGAGGATGTACAAAGTGGCAGTGAAATCAGAAGTGTTGTCTTAGCTGGTCGTCGC 1350
Query 1374 TTCTATGA-AAAGGAAGGCTTGCCAGCATTCCCTATGGGAAATATTGACCAGACAAGAAT 1432
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1351 TTCTATGAGAAA-GAAGGCTTGCCAGCATTCCCAATGGGAAATATTGACCAGACAAGAAT 1409
Query 1433 GTGGAAGGTGGGTGAACGCGTCAGGAAGTCCAGACCTGCTGGTGACTTGGGTCCATTGTA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GTGGAAGGTGGGTGAACGCGTCAGGAAGTCCAGACCTGCTGGTGACTTGGGTCCATTGTA 1469
Query 1493 TCCCTTCACCGCTGGAGTTTATGTAGCACTTATGATGGCTCAGATTGAGATCTTGAGGAA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TCCCTTCACCGCTGGAGTTTATGTAGCACTTATGATGGCTCAGATTGAGATCTTGAGGAA 1529
Query 1553 GAAAGGTCACTCTTACTCAGAAATCATCAACGAGAGTGTGATTGAATCCGTGGACTCTCT 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GAAAGGTCACTCTTACTCAGAAATCATCAACGAGAGTGTGATTGAATCCGTGGACTCTCT 1589
Query 1613 AAACCCATTTATGCACGCCAGGGGAGTGTCCTTCATGGTTGACAACTGCTCAACCACAGC 1672
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1590 AAACCCATTTATGCACGCCAGGGGAGTGTCCTTCATGGTTGACAACTGCTCGACCACAGC 1649
Query 1673 AAGATTGGGTTCGAGGAAATGGGCGCCACGGTTTGACTACATCCTGACCCAACAAGCTCT 1732
|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1650 AAGACTGGGTTCGAGGAAATGGGCCCCGCGGTTTGACTACATCCTGACCCAACAAGCTCT 1709
Query 1733 TGTGGCTGTGGACAGTGGTGCAGCAATCAACAGAGACCTAATCAGTAACTTCTTCTCTGA 1792
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 1710 TGTGGCTGTGGACAGTGGTGCAGCTATCAACAGAGACCTGATAAGTAACTTCTTCTCGGA 1769
Query 1793 TCCAGTCCATGGTGCCATTGAGGTCTGCGCACAGCTCAGGCCTACCGTTGATATCTCTGT 1852
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1770 TCCAGTCCATGGTGCCATTGAGGTCTGCGCACAACTCAGGCCTACCGTTGATATCTCTGT 1829
Query 1853 GCCTGCTGATGCAGACTTTGTTCGACCTGAGTTGCGTCAATCTAGCAACTGAGTGAAGGG 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 GCCTGCTGATGCAGACTTTGTTCGACCTGAGTTGCGTCAATCTAGCAACTGAGTGAAGGG 1889
Query 1913 TTGAAAGTTTGTCAG--TCTCTTATTTGTAATCGGAG-TAT---TAAGTCGAGAGTTTGT 1966
|||||||||||| || |||||||||||||||||||| | | ||||||||||||||||
Sbjct 1890 TTGAAAGTTTGTGAGAGTCTCTTATTTGTAATCGGAGGTTTAAGTAAGTCGAGAGTTTGT 1949
Query 1967 GATGTTTTCTTAGGCGTGACTGTTTGTTTTGTTTGAAGGATTATGTCTCTTTGCTTTGGT 2026
|||||||| ||||| |||||||||| | |||||| |||||||||||||
Sbjct 1950 GATGTTTT-TTAGGGGTGACTGTTT----------A----TTATGTTTCTTTGCTTTGGT 1994
Query 2027 CTTAAAATCTACTTAAATCAATAAAATAGTTT 2058
||||||||||||||||||||||||||||||||
Sbjct 1995 CTTAAAATCTACTTAAATCAATAAAATAGTTT 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5