BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58630.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486315 jgi|Araly1|486315|fgenesh2_kg.5__2307__AT3G58630.1 2076 0.0
> Ahg486315 jgi|Araly1|486315|fgenesh2_kg.5__2307__AT3G58630.1
Length=1403
Score = 2076 bits (1124), Expect = 0.0
Identities = 1325/1416 (94%), Gaps = 37/1416 (3%)
Strand=Plus/Plus
Query 1 GCTCACGGTTTAGTACATGCACACAAAGCAAAAACGCTGGTTTGTCTTTTTaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 GCTCACGGTTTAGTACATGCACACAAAGCAAAAACGCTGGTTTGT-TTTTT----TAAAA 55
Query 61 GAACTTCGTTTC-TCTTCAATTCCGTTACCGTCACTGTCACC--G--T-T-CACCTCCGT 113
|||||||| ||| || ||||||||||||||||||| |||||| | | | |||||||||
Sbjct 56 GAACTTCG-TTCGTCGTCAATTCCGTTACCGTCACCGTCACCGTGACTGTCCACCTCCGT 114
Query 114 TTATCTCATCCTCACCGTTCATCTTCTTCGATCTAACTCGCCGTCGTTCACCTTATAATG 173
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 115 TTATCTCATCCTCACCGTTCATCTTCTCCGATCTAACTCGCCGTCGTTCACCGTATGATG 174
Query 174 GACACCGTCAACGATTCCTTTTCGCCGGGATCTTCCCGACCTTCGCCGGCGACGCTTTCT 233
||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 175 GACGCCGTCAACGATTCCTTTTCGCCGGGATCTTCTCGTCCTTCGCCGTCGACGCTTTCT 234
Query 234 CGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTCATCCAAGCCTGGGGTAATCGC 293
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 235 CGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTAATCCAAGCCTGGGGTAATCGC 294
Query 294 TACGTCGACCTCAGCCGAGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCC 353
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TACGTCGAGCTTAGCCGTGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCC 354
Query 354 GTTAACGACCGTCACTACAACACCGGTCGAAACGTTTCCGCCGCCAAATCGCAGCCGTAT 413
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 GTTAACGACCGTCACTACAACACCGGCCGAAACGTTTCCGCCGCCAAATCGCAGCCGTAT 414
Query 414 CGCACCGACGTTCAGTGTAAAAACCGGATCGATACTCTGAAGAAGAAGTACAAAGTCGAG 473
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 415 CGCACCGACGTTCAGTGTAAAAACCGGATCGATACTTTGAAGAAGAAGTTCAAAGTCGAG 474
Query 474 AAGGCTAGGGTTTCGGAATCCAATCCCGGTGCCTACATCAGCCCTTGGCCTTTCTTCTCC 533
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 475 AAGGCTAGGGTTTCCGAATCCAATCCCGGTGCATACATCAGCCCTTGGCCTTTCTTCTCC 534
Query 534 GCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGAT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGAT 594
Query 594 AACATCCCGCA-CCAGAGGCTATCACTTCCGATGTCCATTAATCCAGTTCCGGTCGCTCC 652
||||||||| | |||||||||||| ||||||||| | |||| ||||||||||||||||||
Sbjct 595 AACATCCCG-AGCCAGAGGCTATCGCTTCCGATGGCGATTATTCCAGTTCCGGTCGCTCC 653
Query 653 ACGATCGGCGATCCCCAGACGTCCGGCGACATCGCCGGCGATTATACCTCACGCCGGTGA 712
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 654 ACGATCGGCGATCCCCAGACGTCCGGCGACGTCGCCGGCGATTATACCTCACGTCGGTGA 713
Query 713 CGATTTACTCGGATTTCGCGGGAATCTCAACGCATTCGCGGCAGCCGCAGCGGCGGCGGC 772
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 714 CGATTTACTCGGATTCCGCGGAAATCTAAACGCATTCGCGGCAGCCGCAGCGGCGGCGGC 773
Query 773 GTGTCCGGCGTCTGAAGATGACTCGGAAGGTTCAAGGTCTAGATCGAGCGGTCGTAGCGG 832
||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 774 GTGTCCGGCGTCTGAGGATGATTCGGAAGGTTCAAGGTCTAGATCGAGCGGGCGAAGCGG 833
Query 833 GAGTAACAAGAAGCGGGAGAGGAAAATTGAGAAGAAGCAAGGCTACAAGGAAGTTGCCGA 892
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 834 AAGTAACAAGAAGCGGGAGAGGGAAATTGAGAAGAAGCAAGGTTACAAGGAAGTTGCCGA 893
Query 893 CGCAATTGAGAGGCTTGGACAGATATACgagagagtcgaggagaagaagaggaaggaaat 952
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 894 CGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAGGAAGAGGAAGGAAAT 953
Query 953 ggttgaattggagaagcagagaatgagaTTCGCTAAGGAATTGGAATGCCATAGGATGCA 1012
|||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct 954 GGTTGAATTGGAGAAGCAAAGAATGCGATTTGCTAAGGAATTGGAATGTCATAGGATGCA 1013
Query 1013 ACTGTTCACGGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGG 1072
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACTGTTCACTGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGG 1073
Query 1073 ACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATGGA-TTTCCCTAGTTACT 1131
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1074 ACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATAGACTTTCC-TAGTTACT 1132
Query 1132 TCTAGA-G-CATCATGAGTTTGTGATTGTAGCCATTTTGATGAAGATG--AGA-G--AA- 1183
|||| | | ||||||||||||||||||||||||||| |||||||||| ||| | ||
Sbjct 1133 TCTA-ATGGCATCATGAGTTTGTGATTGTAGCCATT--GATGAAGATGGGAGAAGTCAAC 1189
Query 1184 AGTC-A-GCGTTCTTCCACCAACCAATAGAAGATATGGTAACAAAGAAACATGAGTTTCT 1241
| || | |||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1190 A-TCTAAGCGTTCTTCCACCAACCAATAGAAGATATGGTAACAAAGAAAAATGAGTTTGT 1248
Query 1242 CTTTGTTTTGTAAATTTTA-ACCCTTTTAGAAGATTCCGATTCCAACCCAGGATTGaa-a 1299
|||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
Sbjct 1249 CTTTATTTTGTAAATTTTTTACTCTTTTAGAAGATTCCGATTCCAACCCATGATTGAAGA 1308
Query 1300 -aaa-aaa-TTGGTGACGTTATATTGGTATATCTACACAATGAAACAGTACAAGAAACAG 1356
||| ||| |||||||| ||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1309 GAAAGAAAATTGGTGACTTTATATTGGTATATCTAAACAATGAAACAGTAGAAGAAATAG 1368
Query 1357 TTTTCAGCAAAATTATATTGGTTAGTATTGTTTGGT 1392
|||||||||||||| | ||||||| |||||||||||
Sbjct 1369 TTTTCAGCAAAATT-TCTTGGTTATTATTGTTTGGT 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5