BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58650.1
Length=3133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324343 jgi|Araly1|324343|fgenesh1_pm.C_scaffold_5001887 3932 0.0
Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1 224 3e-57
> Ahg324343 jgi|Araly1|324343|fgenesh1_pm.C_scaffold_5001887
Length=2457
Score = 3932 bits (2129), Expect = 0.0
Identities = 2353/2462 (96%), Gaps = 11/2462 (0%)
Strand=Plus/Plus
Query 568 ATGGACGTCGTTGAGAGAAAAAGACCAAGAGGAGCGTTTCTAAATCTGTTTGATTGGCAT 627
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGACGTTGTTGAGAGAAAAAGACCAAGAGGAGCGTTTCTAAATCTCTTTGATTGGCAT 60
Query 628 GGAAAATCCAGGAAGAAGCTTTTCTCTTCCAATCTCTCCCAACTCTCTGAAGAATCTAAG 687
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GGAAAATCCAGGAAGAAGCTTTTCTCTTCCAATATCTCCCAACTCTCTGAAGAATCTAAG 120
Query 688 CAAGCAAAAGAGAATGTTCAAAACCCCTCTATTACGCCGCATTCTGTTTTTGAAGTTGAT 747
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 121 CAAGCAAAAGAGAATGTTCAAAACCCCTCTATTACGCGGCATTCTGTTTTTGAGGTCGAT 180
Query 748 CAGAGTGTAAAGAACCCAACTTACAACCCGAGAAGTGACTCTAGCTGTTGTGCTTCATCT 807
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CAGAGTGTAAAGAACCCAACTTACAACCCGAGAAGTGACTCGAGCTGTTGTGCTTCATCT 240
Query 808 GTTACTAGTGATGATGGAAATGTGGTTAGAGCAAGTGTGGTAGCGAGGCTTATGGGTTTA 867
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTAACCAGTGATGATGGAAATGTGGTTAGAGCAAGTGTGGTAGCGAGGCTCATGGGTTTA 300
Query 868 GAGGGTTTACCACTACCAAACGTTTTGGAACCACGGGTTAATCCTGATCTTGATCCATAC 927
|||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct 301 GAGGGTTTACCACTACCAAATGTTTTGGAACAACGGGTTAATCCTGATCTGGATCCATAC 360
Query 928 TTTCTCAGATCCTCGCGCCAAGCAAACACTTGGGATGCTAATGTTGATCGTCAGAGTGAC 987
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCTAAGATCCTCGCGCCAAGCAAACACTTGGGATGCTAATGTTGATCGTCAGAGTGAC 420
Query 988 TTCGATGGTGTTTCTTGGGATCATTTGGATTCAAGAACCAGTAAAGGGCCGCGTAA-ACG 1046
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 421 TTCGATGGTGTTTCTTGGGATCATTTGGATTCAAGAACCAGTAAAGGGCCGCGTAAGA-G 479
Query 1047 GATGATTGAGCGGTTTCAAACCGAAACTTTACCCCCGAGATCAGCTAAACCGATCTCTGT 1106
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 GATGATTGAGCGATTTCAAACCGAAACTTTACCCCCAAGATCAGCTAAACCGATCTCTGT 539
Query 1107 CACTCACAATAAGCTCTTGTCTCCAATAAGGAATCCTGGATTTGTTCCATCTAGGAACCC 1166
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CACTCATAATAAGCTCTTGTCTCCAATAAGGAATCCTGGATTTGTTCCATCTAGGAACCC 599
Query 1167 TGCTTATGTAATGGAAGCTGCTTCAAGAATGATCGAGCAAAGTCCACGGATGATTGCAAG 1226
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 TGCTTATGTAATGGAAGCTGCTTCAAGAATGATTGAGCAAAGTCCACGGATGATTGCAAG 659
Query 1227 AACACGGATGGTGTCATCGTCTGATTCTTCTTCTCCAGTTCCATTGAGGATTCGAGATTT 1286
|||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 AACAAGGGTGGTGTCATCGTCTGATTCTTCTTCGCCAGTTCCATTGAGGATTCGAGATTT 719
Query 1287 GAAAGAGAAACTTGAAGCTGCGCAGAAAGCGTCAACTTCAG---TTCCTCAAATCTCTAA 1343
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 720 GAAAGAGAAACTAGAAGCTGCGCAGAAAGCGTCAACTTCAGTTCTTCCTCAACTCTCTAA 779
Query 1344 TGATACTCGGAACAGTAGGTACCTAAGAGGAGATCAAAACGAGAAGAAAACTACAGTATT 1403
||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 780 TGATACTCGCAACAGTAGGTACTTAAGAGGAGATCAAAACGGGAAGAAAACTACAGTATT 839
Query 1404 GGGGAAAAACAGTTATGATGCTTTGAAAGGTGGTGAAGTGAAGCCACCTTCTTTCGCTGC 1463
|||||||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 840 GGGGAAAAGCAGTTGTGATGGGTTGAAA---AGTGAAGTGAAGCCACCTTCTTTCTCTGC 896
Query 1464 GCAAGCAAAAGTCAGCAGTAATCAGAAGCAAGACAGCTTATCAATGTCTTCAAGTGGCAA 1523
|||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 897 ACAAGCAAAAGCCAGCAGTAATCAGAAGCAAGACAGCTTAACAACGTCCTCAAGTGGCAA 956
Query 1524 CAAGAGGATGTCTTCGGGACAAAAGGAGAAAGTGGAAGCTAAGAATAGGGCGGTTAAAAG 1583
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 CAAGAGGATGTCTTCGGGACAAAAGGAGAAAATGGAAGCTAAGAATAGGGCGGTTAAAAG 1016
Query 1584 CCAAAACAGTAGCAAAGGATCTTCCTTGAGTACCGGAAAGAATGTGCTTAGGCAAAACAA 1643
||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| ||| |
Sbjct 1017 CCAAAACAGTATCAAAGGATCTTCCTCGAGCACCGGAAAGAATGTGCTTAAGCAGAACCA 1076
Query 1644 CCAGAAGCAGAACTGCAGAGACAATCAGCAATCCAGGAGAGTAATGAACAAAGTAGTAAA 1703
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1077 CCAGAAGCAGAACTGCAGAGACAATCAGCAATCCAGGAGAGTAATAAACAAAGTAGTAAA 1136
Query 1704 TAAGGTTCTTGTGGAAAGTGGATCTATATCGAAGAGCTCAGGATTTACTATGTCATCAGC 1763
|||| |||||||||||||||||||||||| || ||| | |||||||||||| |||||||
Sbjct 1137 TAAGAATCTTGTGGAAAGTGGATCTATATCAAAAAGCCCGGGATTTACTATGACATCAGC 1196
Query 1764 AGAAAAACCCACTTCTTTACCTTTATCCCGCAAAAAGAGTCTTCCTCGAAGCAAAAAACC 1823
|||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1197 AGAAAAACTGACTTCTTTACCTTTATCCCGCAAAAAGAACCTTCCTCGAAACAAAAAACC 1256
Query 1824 GCGGAATGGAGTGCAAGAATCTGGAATTTATGAAGATAAGCGGATCAAAAGGGGTGAAAA 1883
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1257 GCGGAATGGAGTGCAAGAATCGGGAATTTATGAAGATAAGAGGATCAAAAGGGGTGAAAA 1316
Query 1884 GTCGATAAAATGTAACATTTCCATTGATGGCGACTCGAGTACTAGTAAAGATGATCAGAA 1943
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1317 GTCGATAAAATGTAACATTTCCATTGATGGCGACTCGAGTACGAGTAAAGATGATAAGAA 1376
Query 1944 AAGGGACATGGATGTGATATCTTTCACTTTCTCATCTTCGATCAAAGGTTTATCATCTCC 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1377 AAGGGACATGGATGTGATATCTTTCACTTTCTCATCTTCGATCAAAGGTTTATCA--T-C 1433
Query 2004 TCATTCACAAGGAACCAAACAAGATGCAGACTCTGCTATAAGGTTCAATGTGATAGGTGG 2063
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TCATCCACAAGGAACCAAACAAGATGCAGACTCTGCTATAAGGTTCAATGTGATAGGTGG 1493
Query 2064 TGATTCTTTAAATGCGCTTTTGGAGCAGAAGCTCAGGGAATTGACAACGAAGATTGAATC 2123
||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1494 TGATTCTTTAAATGCACTTTTGGAGCAGAAGCTCAGGGAATTGACCTCAAAGATTGAATC 1553
Query 2124 ATCTAGCTCTAGCTTGATCCAAGAAGAGCCCTTGAGTTCCATTTCAAAAGATAGAGCGAA 2183
|||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||
Sbjct 1554 ATCTAGCTCTAGCTTGATCCAAGAAGAGTCTTTGAGTTCCCTTTCAAAGGATAGAGCGAA 1613
Query 2184 TGCGATGATTTCATCGCCTTCCAAATATAGCGGATTGACTCAAAGCAGTCTTGATAGAGT 2243
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1614 TGGGATGATTTCATCGCCTTCCAAATATAGCGAATTGACTCAAAGCAGTCTTGATAGAGT 1673
Query 2244 TTTAACAGAGAGTGAATCTGTTTCTGACTGCACTTCATTCTTTAACAGCCAGAAAGTCCA 2303
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1674 TTTAACAGAGAGTGAATCTGTTTCTGACTGCACTTCATTCTATAACAACCAGAAAGTCCA 1733
Query 2304 GAAGCAGAAGGTAATACAGGGAGAAGAACAAGAAGTTAGCAGCATCACCACTCTTACAGA 2363
|||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1734 GAAGAAGAAGACGATGCAGGGAGAAGAACAAGAAGTTAGCAGCATCACCACGCTTACAGA 1793
Query 2364 AGCTGATGATTTTGCACTCTCCTGCAGCAAGAGTATCTCAGATTGCAGACATGACAGAGA 2423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 AGCCGATGATTTTGCACTCTCCTGCAGCAAGAGTATCTCAGATTGCAGACATGACAGAGA 1853
Query 2424 ATATGGCATGAAACAGAGTTCATCAGATCAAGAGCTCACTTGGGGTTCATCCAACGAGTC 2483
|||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 1854 ATATGGCATGAAACAGAGTTCATCAGATCAGGAGCTCACTTGGGTTTCATCAAACGAGTC 1913
Query 2484 CCAGCACACCTTAGATGAAACAGAATCAGCAACACTCGATTGGGAGCTCGAGTACATAAC 2543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 CCAGCACACCTTAGATGAAACAGAATCAGCAACACTCGATTGGGAGCTCGAGTACATAAC 1973
Query 2544 CGAGATCCTCAACTCTGGGCAGCTCATGTTTCAAGACTTCGCCTCAGGGACAACCACTAA 2603
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1974 CGAGATCCTCAACTCTGGGCAGCTCATGTTTCAAGACTTTGCCTCAGGGACAACCACTAA 2033
Query 2604 TGAATCATTACTACCCTCCAGCCTCTTTGATGAAATGGAACGCTCTCGAGGAGCTGCAAC 2663
|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |
Sbjct 2034 TGAATCATTACTACCCTCGAGCCTCTTTGACGAAATGGAACGCTCTAGAGGAGCTGCGAT 2093
Query 2664 GTCAATGAAGACAGAAAGAAAGGCGCTTTTCGACTGTGTGAATCAGTGCTTAGCGGTGAA 2723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 GTCAATGAAGACAGAAAGAAAGGCGCTTTTCGACTGTGTGAATCAGTGCTTAGCGGTGAA 2153
Query 2724 ATTTGAAAGGATGTTAATTGGAAGCTGCAAAGGGATGATGATGTCAGGTGGGATTTTGTT 2783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 ATTTGAAAGGATGTTAATTGGAAGCTGCAAAGGGATGATGATGTCAGGTGGGATTTTGTT 2213
Query 2784 GGAACATAGAGATTTGTTGGCTGAAGAAGTGAACAGAGAAGTAAAAGGGTTGAAGAAGAT 2843
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GGAACATAGAGATCTGTTGGCTGAAGAAGTGAACAGAGAAGTAAAAGGGTTGAAGAAGAT 2273
Query 2844 GAGAGAGATGATGATCGACGAGCTTGTGGATCATGACATGAGCTGTTTTGAAGGGAGATG 2903
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2274 GAGAGAGATGATGATCGACGAGCTTGTGGATCATGACATGAGCTGTTTCGAAGGGAGATG 2333
Query 2904 GATTGGTTATGAAAGAGAGATGTTTGAGGAAGGAATAGACATGGAAGGAGAGATTGTTTC 2963
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2334 GATTGGTTACGAAAGAGAGATGTTTGAGGAAGGCATAGACATGGAAGGAGAGATTGTTTC 2393
Query 2964 TGCTTTGGTTGATGATTTAGTTAGTGATATTTTATCTACTAGTGTTCTTAAACGGTCGTT 3023
|| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct 2394 TGATTTGGTTGATGATTTAGTTAGTGATCTTTTCTCTATTAGTGTTCTTAAACGGTCGTT 2453
Query 3024 GT 3025
||
Sbjct 2454 GT 2455
> Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1
Length=3332
Score = 224 bits (121), Expect = 3e-57
Identities = 365/479 (76%), Gaps = 31/479 (6%)
Strand=Plus/Plus
Query 2524 TGGGAGCTCGAGTACATAACCGAGATCCTCAACTCTGGGCAGCTCATGTTTCAAGACTTC 2583
|||||||| ||||||||| ||||||||||| |||| || || ||| | |||| ||
Sbjct 2608 TGGGAGCTTGAGTACATATCCGAGATCCTCGGGTCTGACCAACTGATGGTGAAAGAATTT 2667
Query 2584 GCCTC-AGGGACAACCACTAATGAATCATTACTACCCT-CCAGCCTCTTTGATGAAATGG 2641
| ||| |||| |||| || | | || || ||| | |||||||||||||||||||
Sbjct 2668 G-CTCTGGGGATGGCCAC---TG-A-C-GTATTA-CCTGCGAGCCTCTTTGATGAAATGG 2719
Query 2642 AACGCTCTCGAGGAGCTGCAAC-GTCAATGAAGA-CAGAAAGAAAGGCGCT-TTTCGACT 2698
|| | | ||||||| ||||| | || || | || | |||||| | || ||| || |
Sbjct 2720 AA-G-GC-CGAGGAGAAGCAACAG-CAGCCAAAATCA-AGAGAAAGACACTGTTT-GATT 2773
Query 2699 GTGTGAATCAGTGCTTAGCGGTGAAATTTGAAAGGATGTTAATTGGAAGCTGCAAAGGGA 2758
||| ||| | ||||||||| | |||| || |||||||| || || ||||||| ||||
Sbjct 2774 TTGTCAATAATTGCTTAGCGCTCAAATGCGAGAGGATGTTTATGGGTAGCTGCAGAGGGC 2833
Query 2759 TGA-TGATGTC--AGGTGGGATTTTGTTGGAACATAGAGATTTGTTGGCTGAAGAAGTGA 2815
| | || | | ||| | | ||||||| ||||| ||||||| ||| || |||||| |||
Sbjct 2834 T-ATTG--GGCAAAGGCGAGCTTTTGTTTGAACAAAGAGATTGGTTAGCAGAAGAACTGA 2890
Query 2816 ACAGAGAAG-TAAAAGGGTTGAAGAAGATGAGAGAGATGATGATCGACGAGCTTGTGGAT 2874
|||||| || | | ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 2891 ACAGAG-AGATTCATGGGTTGAAGAAGATGAGAGAGATGATGATGGATGAGCTTGTTGA- 2948
Query 2875 CAT-GACATGAGCTGTTTTGAAGGGAGATGGATTGGTTAT-GAAAGAGAGATGTTTGAGG 2932
|| || |||||| |||| |||||||| ||| ||| || | || ||||||| | ||| |
Sbjct 2949 CAAAGAAATGAGCAGTTTCGAAGGGAGGTGGCTTGATT-TCGAGAGAGAGACATATGAAG 3007
Query 2933 AAGGAATAGACATGGAAGGAGAGATTGTTTCTGCTTTGGTTGATGATTTAGTTAGTGAT 2991
|||| || ||||| || |||||||| || ||| | ||||||||||||||||||| ||||
Sbjct 3008 AAGGCATTGACATTGAGGGAGAGATAGTCTCTACATTGGTTGATGATTTAGTTAATGAT 3066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118346391215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5