BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58660.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486318 jgi|Araly1|486318|fgenesh2_kg.5__2310__AT3G58660.1 1618 0.0
> Ahg486318 jgi|Araly1|486318|fgenesh2_kg.5__2310__AT3G58660.1
Length=1452
Score = 1618 bits (876), Expect = 0.0
Identities = 1074/1165 (92%), Gaps = 32/1165 (3%)
Strand=Plus/Plus
Query 41 ATGACCACCGCAGTTTCGCCGCCGCCGC---CGC--A-GGAGCAGCAACTTGTTCACGCT 94
|||||||||||||||||||||||||||| || | ||||||||||||||||| ||||
Sbjct 1 ATGACCACCGCAGTTTCGCCGCCGCCGCAGGAGCAGACGGAGCAGCAACTTGTTCCCGCT 60
Query 95 TCGCAGACTTCAAGAGTGAGTCCCAAGACAGTGGAG-AGCGCCCTCAATGGTCTTATCAA 153
|||||||||||||||||||||||| | || |||| | ||||||||||||||||||| |||
Sbjct 61 TCGCAGACTTCAAGAGTGAGTCCCTATACGGTGG-GTAGCGCCCTCAATGGTCTTACCAA 119
Query 154 TTGGAGAAGCGACAAATCAAAGACAGAGAAGCCTCAACTTCTCGAAG-AAGACGAGCTCG 212
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 120 TTGGAGAAGCGACAAATCAAAGACAGAGAAGCCTCAACTTCTCG-AGCAAGACGAGCTCG 178
Query 213 TCTACCTTTTCG-TTACTTTGAAGAAGATTCCACAGAAGACCCGTACGAATGCTTACCGT 271
||||||| ||| || || |||||||||||||||||| || |||||||||||||||||||
Sbjct 179 TCTACCTAATCGCTT-CTCTGAAGAAGATTCCACAGACGAGCCGTACGAATGCTTACCGT 237
Query 272 ATCCCTTTACCTCATCCTCTTATCAACCCGACGGTCGATTCGCCGGAGATTTGTCTCATC 331
|||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct 238 ATCCCTTTACCTCATCCTCTCATCAACCCAACGGAAGATTCGCCGGAGCTTTGTCTCATT 297
Query 332 ATCGACGACAGACCTAAAAGTGGTCTCACCAAAGATGATGCGATGAAGAAGATCAAATCT 391
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 298 ATCGACGACAGACCTAAAAGTGGTCTCACCAAAGCTGATGTGATGAAGAAGATCAAATCT 357
Query 392 GAGAATATTCCAATCACCAAGGTTATTAAGCTTTCGAAACTGAAGAGTGATTACAAGGCG 451
||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct 358 GAGAATATTCCGATCACTAAGGTTATTAAGCTTTCGAAGCTGAAGACTGATTACAAGGCG 417
Query 452 TTCGAAGCGAAGAGGAAACTCTGCGACTCTTACGACATGTTTTTCACTGATCGGAGGATC 511
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 TTCGAAGCGAAGAGGAAACTCTGCGACTCTTACGACATGTTTTTCGCTGATCGGAGGATC 477
Query 512 ATTCCTCTGCTGCCGAGGGTGATTGGGAAGAAGTTCTTTACGAGCAAGAAGATTCCGGTG 571
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 ATTCCTCTGCTTCCGAGGGTGATTGGGAAGAAGTTCTTTGCGAGCAAGAAGATTCCGGTG 537
Query 572 GCGCTTGATTTGAAGCACAGGAACTGGAAACATCAGATAGAGAAAGCTTGTGGATCTGCT 631
||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 538 GCGATTGATTTGAAGCACAAGAACTGGAAACAGCAGATAGAGAAAGCTTGTGGATCTGCT 597
Query 632 ATGTTCTTCATAAGGACTGGGACGTGTAGTGTCATTAAGGTTGGGAAATTGTCTATGGAT 691
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATGTTCTTCATAAGGACTGGGACGTGTAGTGTCATTAAGGTTGGGAAATTGTCTATGGA- 656
Query 692 ATTTGT-GAAATTACTGAGAATGTGATGGCGACATTGAATGGACTAGTTGAGTTCTTGCC 750
| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 657 ACTTAACGAAATTACTGAGAATGTGATGGCGACATTGAATGGAGTAGTTGAGTTATTGCC 716
Query 751 TAATAAGTGGACGTACGTTAGGTCTTTGCATTTGAAGTTGTCTGAGAGTTTAGCTTTGCC 810
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 TAATAAGTGGAAATACGTTAGGTCTTTGCATTTGAAGTTGTCTGAGAGTTTAGCATTGCC 776
Query 811 TATATATCAGTCTGTTCCTGATTTGAAGCTTAAAATCGATGCTTTTGGGTCTGGAAAGAG 870
||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||
Sbjct 777 TATATATCAGTCTGTACCTGATTTGAAGCTCAAAATCGATGCTTTTGCAACCGGAAAGAG 836
Query 871 TGTTGTTCAGGAGGAGAAGGAAGGTGAAGTTGAAGAAGTTGTTGCTGTTGATGGTGGAGA 930
||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct 837 TGTTGTTAAGGAGGAGAAGGAAGGTGAAGTTGAAGC--T-G---CTG---ATGGTGGAGA 887
Query 931 GAAGAGTGTTACAGGGAAGGGAAAGAAGAAGAAAGGTAGGATTCACGAGGTTAGGTATAT 990
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 888 GAAGAGTGTTACAGGGAAGGGAAAGAAGAAGAAAGGTAGGATCCATGAGGTTAGGTATAT 947
Query 991 GGATAGTAATGTAGCTGAGGTGCTTGATGAGGATGAGATTGGTGGTGACGAGGATAATAA 1050
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 948 GGATAGTAATGTAGCTGAGGTGCTTGATGAGGATGAGATTGGTGGTGATGAGGATAACAA 1007
Query 1051 TGAGATTGTtgagtctg---a---ggag-a-a-gaagatgaagaagaggaagaaggaggt 1101
||||||||||||||||| | |||| | | ||||||||||||||| |||||||||||
Sbjct 1008 TGAGATTGTTGAGTCTGGGGATAAGGAGGAGAAGAAGATGAAGAAGAGAAAGAAGGAGGT 1067
Query 1102 aagtgaagttgcagagagtgagaagccgatgaagaaagCTGCCAAAGGGAAGTTGAAACC 1161
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1068 AAGTGAGGTTGCAGAGACTGAGAAGCCGATGAAGAAAGCAGCCAAAGGGAAGTTGAAACC 1127
Query 1162 TGATGTTGAGAAACCGATGAAGAAA 1186
|||||||||| ||||| ||||
Sbjct 1128 CAATGTTGAGAAGGGGATGATGAAA 1152
Score = 331 bits (179), Expect = 9e-90
Identities = 256/291 (88%), Gaps = 13/291 (4%)
Strand=Plus/Plus
Query 1279 GAAGAGCAAGGACGGCTTAAAGGCGAAAAAGACAAC-AATGGTTGCGAAAGACGAATCTG 1337
|||||| ||||| || ||||||||||||||||| || | | |||| |||||||| ||||
Sbjct 1164 GAAGAGTAAGGATGGGTTAAAGGCGAAAAAGACGACGCA-GATTGCAAAAGACGAGTCTG 1222
Query 1338 GTGGTGGATTGAAGCCGAAGA-G-A-AAGAGTGTGCTTAGGAAATGAGGCAGAGGAAGGT 1394
| ||||||||||||||||||| | | |||||||||||||| |||||||||| |||||| |
Sbjct 1223 GAGGTGGATTGAAGCCGAAGAGGAAGAAGAGTGTGCTTAGAAAATGAGGCAAAGGAAGAT 1282
Query 1395 CTTGAGTGTTTGC----TT---TTGAGTATGATTTATGTTTTATTTTCTATCGTAGTTCT 1447
||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1283 CTTGAGTGTTTGCTTTTTTAAATTGAGTATGATTTATGTTTTATTTTCTATCGTAGTTCT 1342
Query 1448 TATTACATTTTTGAGCCATTTCATATCTTGTACTACTTCTATGAAACATTGAACTGGTGA 1507
||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||
Sbjct 1343 TATTACATTTTTGAGCCCTTTCATATCGTGTACTACTTCTATGAAACATCCACCTGGTGA 1402
Query 1508 ATGTGGGTTTGATGGTTTTGTGGAGGAAACATACTACTGTTCACCTTTTAA 1558
|||||| ||||||| ||||||||| |||||||||| || | ||||||||||
Sbjct 1403 ATGTGG-TTTGATGCTTTTGTGGAAGAAACATACTGCTATGCACCTTTTAA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5