BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58670.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486320 jgi|Araly1|486320|fgenesh2_kg.5__2312__AT3G58670.1 1879 0.0
Ahg935152 jgi|Araly1|935152|scaffold_403140.1 547 6e-155
> Ahg486320 jgi|Araly1|486320|fgenesh2_kg.5__2312__AT3G58670.1
Length=1250
Score = 1879 bits (1017), Expect = 0.0
Identities = 1201/1282 (94%), Gaps = 43/1282 (3%)
Strand=Plus/Plus
Query 1 AGATCAAATTCTGATTCCTCCTTCCGACTAAAAAACCATTTCCATCATCGGTTTCCTCCG 60
||||||| |||||| | ||| ||||||| || ||||||||||||||||| |||||||||
Sbjct 1 AGATCAACTTCTGA-T--TCC-TCCGACT-AACAACCATTTCCATCATCGTTTTCCTCCG 55
Query 61 ATACATCTCCTCGTCGCCGTTCTTCGGATTTTCACTCTTCTGCTCGAAAGGGCAGTGCTT 120
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 ATACCTTTCGTCGTCGCCGTTCTTCGGATTTTCACTCTTCTGCTCGAAAGGGCAGTGCTT 115
Query 121 GAGAATCATTGAAGAAGGTGATCGCTGGTGC-T---GTTTTGATAACTCAAAGCCGTTTT 176
||||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 116 GAGAATCATTGAAGAAGGTGATCGCTGGTCCTTAAAGTGTTGATAACTCAAAGCCGTTTT 175
Query 177 GCTGAAAGAGGGTTACCAAAGTTAGAAGCTCAAGAACTTGGAGCTGTGTCTTCTTTTTGT 236
|| | ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 176 GC-----------T--CAAAGTTAGGAGCTCAAGAACTTGGAGC--TGTCTTCTTTTTGT 220
Query 237 ATCATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTAAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ATCATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTAAT 280
Query 297 GGTCCTGTGTCTGAGGAGGCCTTAGACAAGGTTCGCAATGTCTTGGAGAAAATCAAGCCG 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 281 GGTCCTGTGTCTGAGGAGGCCTTAGACAAGGTTCGCAATGTGTTGGAGAAAATCAAGCCG 340
Query 357 TCTGATGTTGGTCTCGAACAGGAAGCTCAATTGGTGCGTAATTGGCCTGGTCCTGGGAAC 416
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||
Sbjct 341 TCTGATGTTGGTCTCGAACAGGAAGCTCAGTTGGTGCGTAACTGGGCTGGTCCCGGGAAT 400
Query 417 GAGCGTAATGGAAACCATCATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAGTGT 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GAGCGTAATGGAAACCATAATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAGTGT 460
Query 477 GACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCATAAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCATAAT 520
Query 537 CATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCAATGCACGTTAAGTCATAT 596
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 521 CATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCGATGCACGTGAAGTCGTAT 580
Query 597 GATTGGGCTGAGCCTGACCAATCAGAGCTAGACGATCCATTACAAGCAAGACCCGCGAAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 581 GATTGGGCTGAGCCTGACCAATCAGAGCTAGACGATCCATTACAAGCAAGACCTGCGAAG 640
Query 657 CTGGTCAAGGATATTGATATGACTTCCCCTAGCCCAGCAACCACTCTATATCCAACAACC 716
|| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 641 CTAGTCAAGGATACTGATATGACTGCCCCTTGCCCAGCAACCACTCTATATCCAACAACC 700
Query 717 GGTGGCAACATTCATTGTTTCAAAGCCATTACTCATTGTGCAATCTTCGACATCTTATCT 776
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GGTGGCAATATTCATTGTTTCAAAGCCATTACTCATTGTGCAATCTTCGACATCTTATCT 760
Query 777 CCTCCATACTCTTCTACTCATGGCAGACACTGCAACTACTTCCGAAAATCCCCAATGCTA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CCTCCATACTCTTCTACTCATGGCAGACACTGCAACTACTTCCGAAAATCCCCAATGCTA 820
Query 837 GACTTACCTGGTGAGATTGAAGTGATGAATGGAGAAGTGATCTCAAATGTGACATGGCTT 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GACTTACCTGGTGAGATTGAAGTGATGAATGGAGAAGTGATCTCAAATGTGACATGGCTC 880
Query 897 GAAGAGTATCAACCTCCAGATAACTTTGTGATATGGAGAGTTCCGTACAGAGGTCCAGTG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GAAGAGTATCAACCTCCAGATAACTTTGTGATATGGAGAGTTCCGTACAGAGGTCCAGTG 940
Query 957 ATTagaaaatgagaaatacaaaa-aggattaaacatattaa-aaaagagcagaaagagaa 1014
||||||||||||||| ||||||| ||| |||| ||||| || ||||||||||||||||||
Sbjct 941 ATTAGAAAATGAGAATTACAAAAGAGGTTTAAGCATAT-AAGAAAAGAGCAGAAAGAGAA 999
Query 1015 agGTGCTTATGATCAGGAGAATAATTGGTAAACCATTCAGAGGCTGGCTGCATAATGGTC 1074
||| |||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1000 AGGAGCTTATTATCAGGAGAATAATTGG-A---------GAGGCTGGCTGCATAATGGTC 1049
Query 1075 GAGGTTCTTACATAATTGTGACCACATTAAGTTCCAGCCTATGTCGTTGTATGATAATGT 1134
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1050 GAGGTTCTTACATAATTGTGACCACATTAAGTTTCAGCCTATGTCGTTGTATGATAATGT 1109
Query 1135 TTACTACATACAACTTTATGATTACTTCACTAGTTTAATATTATAAT-TTTTTCCCCCTA 1193
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1110 TTACTACATACAACTTTATGATTACTTCACTAGTTTAATATTATAATATTTTTTTTCCTA 1169
Query 1194 TTTTTATATGCAGCTA-CA-CA-AAA-AATTGCTCATAAACAGTGTTCTATTTAGTTATC 1249
|||||||||||||||| | || ||| |||||||||||||||||||| |||||||||||
Sbjct 1170 TTTTTATATGCAGCTAGCTGCATAAACAATTGCTCATAAACAGTGTTA-ATTTAGTTATC 1228
Query 1250 ATAAATTTTGTTTCCATTGATC 1271
|||||||||||||||||| |||
Sbjct 1229 ATAAATTTTGTTTCCATTAATC 1250
> Ahg935152 jgi|Araly1|935152|scaffold_403140.1
Length=768
Score = 547 bits (296), Expect = 6e-155
Identities = 598/741 (81%), Gaps = 31/741 (4%)
Strand=Plus/Plus
Query 237 ATCATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTA-A 295
|||||||| || ||| ||||||||||| ||||||||||||| | ||| |||| | | |
Sbjct 19 ATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAGGCGTCTTTCTCTTC-AGA 77
Query 296 TGGTCCTGTGTCTGAGGAGGCCT-TAGACAAGGTTCGCAATGTCTTGGAGAAAATCAAGC 354
| || | || || |||| || | || |||||||||||||||||||||||||||||||
Sbjct 78 CGCACCAATATCAGACGAGG-CTCTGGAGAAGGTTCGCAATGTCTTGGAGAAAATCAAGC 136
Query 355 CGTCTGATGTTGGTCTCGAACAGGAAGCTCAATTGG-TGCGTAATTGGCCTGGTCCTGGG 413
| ||||||||||| ||||||||||||||||||||| | || | || ||||||||
Sbjct 137 CATCTGATGTTGGAATCGAACAGGAAGCTCAATTGGCT-CGGACCAGGTCTGGTCCTCTC 195
Query 414 AACGAGCGTAATGGAAACCATCATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAG 473
|| || || ||||||| ||||| |||| ||||||||||| || ||||| || ||||||
Sbjct 196 AATGAACGCAATGGAAGTCATCAGTCTCCCCCAGCAATAAAGTATCTTCATTTGCATGAG 255
Query 474 TGTGACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCAT 533
|||||||| ||||| || ||||||||||| ||||||||| ||||| ||||| ||||||
Sbjct 256 TGTGACAGTTTCTCTATAGGAATTTTCTGTATGCCACCTTCCTCTATGATACCTCTTCAT 315
Query 534 AATCATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCAATGCACGTTAAGTCA 593
|| ||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 316 AACCATCCGGGCATGACCGTGCTAAGCAAGCTCATTTATGGTTCAATGCACGTGAAGTCA 375
Query 594 TATGATTGGGCT-GAGCCTGACCA-ATCAGAGCTAGACGATCCATTACAAGCAAGACCCG 651
||||||||| || |||||||| | | | || | ||| ||||||| ||||||||||||||
Sbjct 376 TATGATTGG-CTAGAGCCTGAACTGACC-GAACCAGATGATCCATCACAAGCAAGACCCG 433
Query 652 CGAAGCTGGTCAAGGATATTGATATGACTTCCCCTAGCCCAGCAACCAC-TCTATATCC- 709
| || ||||| ||||||| ||| ||||| | || ||||||||||| || | |||||||
Sbjct 434 CTAAACTGGTGAAGGATACTGAGATGACGGCTCCAAGCCCAGCAACAACAT-TATATCCG 492
Query 710 AACAACCGGTGGCAACATTCATTGTTTCAAAGCCATTACTCATTGTGCAAT-CTTCGACA 768
|| || ||||||||||||||||||||||||||||| || |||||||| | ||| ||||
Sbjct 493 AA-AAGTGGTGGCAACATTCATTGTTTCAAAGCCATCACCCATTGTGCTGTTCTT-GACA 550
Query 769 TCTTATCTCCTCCATACTCTTCT-ACTCATGG-CAGACACTGCAACT-ACTTCCGAAAAT 825
||||| |||| || |||||||| | |||| | | || |||| || ||||||| ||||
Sbjct 551 TCTTAGCTCCACCTTACTCTTCAGAG-CATGATCGG-CATTGCA-CTTACTTCCGGAAAT 607
Query 826 CCCCAATGCTA-GACTTACCTGGTGAGATT-GAAGTGATGAATGGAGAAGTGATCTCAAA 883
|| || | | |||||||| ||||| | | ||||||| | ||| |||||| || || |
Sbjct 608 CCAGAA-GAGAAGACTTACCAGGTGA-AGTAGAAGTGA--A-TGGGGAAGTGGTCACAGA 662
Query 884 TGTGACATGGCTTGAAGAGTATCAACCTCCAGATAACTTTGTGATATGGA-GAGTTCCGT 942
||||| |||||||| || | |||||| || ||| ||||||||||| | | ||||||| |
Sbjct 663 CGTGACTTGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACG-ACGAGTTCCTT 721
Query 943 ACAGAGGTCCAGTGATTagaa 963
|||||||||| || |||||||
Sbjct 722 ACAGAGGTCCTGTTATTAGAA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5