BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58690.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486322 jgi|Araly1|486322|fgenesh2_kg.5__2314__AT3G58690.1 2143 0.0
> Ahg486322 jgi|Araly1|486322|fgenesh2_kg.5__2314__AT3G58690.1
Length=1483
Score = 2143 bits (1160), Expect = 0.0
Identities = 1330/1410 (94%), Gaps = 20/1410 (1%)
Strand=Plus/Plus
Query 4 cacacacacacactcacacaAAAACCAAAAACTAATTTTCACGAAATCCGAAGCTTAAAA 63
||||||||||||||||||| |||| ||||||| ||||||||||||| |||| |||| |||
Sbjct 1 CACACACACACACTCACAC-AAAATCAAAAACAAATTTTCACGAAACCCGATGCTTTAAA 59
Query 64 ATTATTCCTCTACTGTTTCAATTTCATCTCTTCTTCCTCTTGAGTTGGCAATTTCTAGGG 123
||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||
Sbjct 60 ATTATTCCTCTACTGTTTCAATTCCATCTCCTCTTCCTCTTGTG-TGGCAATTTCTAGGG 118
Query 124 TTTTCTCATTTTCC-ttttttt-CCATTTCTGGAAACTGGTAAAAGGCTTTTTCTTTGTC 181
||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 119 TTTTCACATTTTCCTTTTTTTTCCCATTTCTGGAAACTGGTAAAA--------------- 163
Query 182 TGTGGGGGAGAAACAAAAATGGAGACAGACGAAGCATACCAAAAGAAAGAGCGAGCTGCA 241
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 164 -GTGGGGGAGAAACAAAAATGGAGACAGACGAAGCATACCAAAAGAAAGAACGTGCTGCA 222
Query 242 TTAGTAGCCATCGTTGTCCTTGCTTGTCTTGCTTTATCTTCTTTGTTCGTCGCCTTTAGC 301
|||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 223 CTAGTAGCCATTGTTGTTCTTGCTTGTCTTGCTTTATCTTCTCTGTTCGTCGCCTTTAGC 282
Query 302 TACTACTGCTATATTCGTAACAAGGTTTCTAAGCGTCACAGAATTAGCAAGAGGTTTGAT 361
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 283 TACTACTGCTATATTCGTAACAAAGTTTCTAAGCGTCACAGAATTAGCAAGAGGTTTGAT 342
Query 362 TGTGAGGAAAAAGGCGATTGTCAGAAAGTACAAGATGTTACTGAAAATGGGTTGCAAATT 421
|| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 343 TGCGAGGAGAAAGGCGATTGTCAAAAAGTACAAGATGTTACTGACAATGGGTTGCAAATT 402
Query 422 TTCACCTTTAAGCAATTGCATTCAGCAACTGGTGGATTTAGCAAGTCTAATGTGGTTGGG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 403 TTCACCTTTAAGCAATTGCATTCAGCAACTGGTGGATTTAGCAAGTCTAATGTTGTTGGG 462
Query 482 AATGGTGGGTTTGGCTTGGTTTATCGTGGTGTGCTTAACGATGGCAGAAAAGTTGCTATC 541
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 463 CATGGTGGGTTTGGGTTAGTTTATCGCGGTGTGCTTAACGATGGAAGAAAAGTTGCTATT 522
Query 542 AAGCTCATGGATCATGCAGGAAAGCAAGGGGAAGAAGAATTCAAGATGGAGGTTGAGTTA 601
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAGTTCATGGATCATGCAGGAAAGCAAGGGGAAGAAGAATTCAAGATGGAGGTTGAGTTA 582
Query 602 CTGAGCCGTCTGCGTTCACCATACTTGTTGGCACTTCTTGGTTATTGCTCAGACAATAGT 661
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTGAGTCGTCTGCGTTCACCTTACTTGTTGGCACTTCTTGGTTATTGCTCAGACAATAGT 642
Query 662 CATAAGCTGCTTGTGTATGAGTTCATGGCAAATGGTGGTCTGCAGGAACACCTGTATCTT 721
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 643 CATAAGCTGCTTGTGTATGAGTTCATGGCAAATGGCGGTCTGCAAGAACACCTGTATCTT 702
Query 722 CCCAACAGGTCTGGTTCTGTCCCACCAAGATTAGATTGGGAAACTAGGATGAGAATAGCT 781
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 703 ACCAACAGGTCTGGTTCTGTCCCACTGAGATTAGATTGGGAAACTCGGATGAGGATAGCT 762
Query 782 GTGGAAGCTGCAAAAGGCTTGGAATATCTCCATGAACAAGTATCACCCCCGGTGATTCAT 841
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 763 GTGGAAGCTGCAAAAGGTTTGGAATATCTCCATGAACAAGTATCACCCCCAGTGATTCAT 822
Query 842 AGAGACTTTAAGAGCAGCAATATTCTGCTGGACAGAAACTTCAATGCCAAAGTTTCAGAT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 823 AGAGACTTTAAGAGCAGCAATATTCTGCTGGACAGAAACTTCAATGCCAAAGTATCAGAT 882
Query 902 TTTGGATTGGCTAAAGTCGGATCAGATAAAGCTGGTGGACACGTTTCTACCCGTGTATTA 961
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 883 TTCGGATTGGCTAAAGTTGGATCAGATAAAGCTGGAGGACACGTTTCTACCCGTGTATTA 942
Query 962 GGCACACAAGGATATGTAGCTCCTGAGTACGCTTTAACTGGTCACTTGACAACAAAGTCG 1021
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 943 GGCACACAAGGATATGTAGCTCCTGAGTACGCTTTAACCGGTCACTTGACTACAAAATCG 1002
Query 1022 GATGTCTATAGCTACGGTGTTGTCCTGTTAGAGTTACTAACCGGTAGAGTTCCAGTAGAT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GATGTCTATAGCTACGGTGTTGTCCTGTTAGAGTTACTAACCGGTAGAGTTCCAGTAGAT 1062
Query 1082 ATGAAGAGAGCTACAGGAGAAGGTGTTCTTGTCTCTTGGGCTTTGCCTCAATTGGCTGAT 1141
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ATGAAGAGAGCTGCAGGAGAAGGTGTTCTTGTCTCTTGGGCTTTGCCTCAATTGGCTGAT 1122
Query 1142 AGAGACAAAGTAGTAGACATAATGGATCCAACACTCGAAGGACAATACTCTACGAAAGAA 1201
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1123 AGAGAGAAAGTAGTAGACATAATGGATCCAACACTCGAAGGACAATACTCGACAAAAGAA 1182
Query 1202 GTTGTTCAAGTTGCAGCAATAGCAGCAATGTGTGTTCAAGCAGAAGCTGACTACAGACCC 1261
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1183 GTTGTTCAAGTTGCAGCAATAGCAGCAATGTGTGTTCAAGCAGAAGCTGATTACAGACCA 1242
Query 1262 TTAATGGCAGATGTGGTGCAGTCACTGGTTCCATTAGTGAGAAACCGTAGGTCAGCTTCA 1321
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1243 TTAATGGCAGATGTGGTGCAGTCACTGGTTCCATTGGTGAGAAACCGTAGGTCAGCTTCA 1302
Query 1322 AAGCTTAGTGGCTGCTCTAGTAGCTTTAGCTTGGCTCGGTCTCCTAACTCTCCGGGTAAA 1381
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1303 AAGCTTAGTGGCTGTTCTAGTAGCTTTAGCTTGGCTCGGTCGCCTAACTCGCCGGGTAAA 1362
Query 1382 GCAAGCATAGGTTCTCAATGAATAAATCAA 1411
||||||||||| ||||| | ||| ||||||
Sbjct 1363 GCAAGCATAGGCTCTCAGTAAATCAATCAA 1392
Score = 93.5 bits (50), Expect = 4e-18
Identities = 80/93 (86%), Gaps = 8/93 (9%)
Strand=Plus/Plus
Query 1446 AACGGTATTTACTAAAACAGACAATGATGTAA-A-C----A--CTTGAGTGATCAAACAT 1497
||||| |||||||||||||||| || |||||| | | | ||||||||||||||||
Sbjct 1391 AACGGGATTTACTAAAACAGACTATAATGTAACACCTTTGAGTTTTGAGTGATCAAACAT 1450
Query 1498 GGAGTCATAGAGATAATCATCAAATAAACTTTT 1530
|||||||||||||| ||||||||||||||||||
Sbjct 1451 GGAGTCATAGAGATTATCATCAAATAAACTTTT 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5