BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58700.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486323 jgi|Araly1|486323|fgenesh2_kg.5__2315__AT3G58700.1 1138 0.0
Ahg483371 jgi|Araly1|483371|fgenesh2_kg.4__2431__AT2G42740.1 771 0.0
Ahg948390 jgi|Araly1|948390|scaffold_800277.1 616 1e-175
Ahg946318 jgi|Araly1|946318|scaffold_702547.1 584 3e-166
> Ahg486323 jgi|Araly1|486323|fgenesh2_kg.5__2315__AT3G58700.1
Length=735
Score = 1138 bits (616), Expect = 0.0
Identities = 675/703 (96%), Gaps = 6/703 (1%)
Strand=Plus/Plus
Query 57 GTTTTCCCGTCGGCCGGAGATATATCGCAACCCTAATCCGAAATGGCGTCGGAGAAGAAG 116
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 37 GTTTTCCCGTCGGCCGGAGATTTATCGCAACCCTAATCCGAAATGGCGTCGGAGAAGAAG 96
Query 117 CTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGT 176
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 97 CTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGT 156
Query 177 GAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACT 216
Query 237 CCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAG 296
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 217 CCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATCAGACGTAATGAGAAG 276
Query 297 ATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 277 ATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGACTG 336
Query 357 AAAGTTAAAGAATACGAACTCTTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTT 416
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 337 AAAGTTAAAGAATATGAACTCTTGAGAAGGAACTTTAGCGACACTGGTTGCTTTGGTTTT 396
Query 417 GGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGC 476
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 397 GGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCAACTGGAATCTACGGT 456
Query 477 ATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGC 536
||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 457 ATGGACTTCTATGTTGTTCTTGAGCGACCTGGTTACCGTGTGGCACGTCGCAGAAGATGC 516
Query 537 AAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAG 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AAGGCTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAG 576
Query 597 GTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATCACTGGTTAAACAAA-TGT 655
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct 577 GTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACTGGCTAAA-AAAGTGT 635
Query 656 GTCAAACAAATAGCTATCATCTGTTTTGttttttttGGGTTCAAATCGTATTTTCTCAGT 715
|||||||||||| |||| ||||||||| || |||| ||||||||||| || |||||||||
Sbjct 636 GTCAAACAAATATCTATAATCTGTTTT-TTCTTTT-GGGTTCAAATCTTACTTTCTCAGT 693
Query 716 TTTGTTTTGCTTCTCTGTTCTTCAGACATTTTGA-TTTTCCTT 757
||||||||||||||||||||||||||||||| || ||||||||
Sbjct 694 TTTGTTTTGCTTCTCTGTTCTTCAGACATTT-GAATTTTCCTT 735
> Ahg483371 jgi|Araly1|483371|fgenesh2_kg.4__2431__AT2G42740.1
Length=660
Score = 771 bits (417), Expect = 0.0
Identities = 537/596 (90%), Gaps = 4/596 (1%)
Strand=Plus/Plus
Query 59 TTTCCCGTCGGCCGGAGATATA-TCGCAACCCTAATCCGAAATGGCGTCGGAGAAGAAGC 117
||||||||||||||| |||| | ||||||||| ||||| ||||||||||||||||||||
Sbjct 13 TTTCCCGTCGGCCGGTGATAAATTCGCAACCCAAATCCCTAATGGCGTCGGAGAAGAAGC 72
Query 118 TATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGTG 177
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 73 TATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACATCTCCGTTGGTG 132
Query 178 AGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACTC 237
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 133 AGAGTGGAGATCGTCTCACCAGAGCTTCCAAGGTTTTGGAACAATTGAGTGGTCAGGCTC 192
Query 238 CTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAGA 297
||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 193 CTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTACCAGACGTAACGAGAAGA 252
Query 298 TTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTGA 357
| || |||||||| |||||||| || |||||||||||||| || ||||| ||||||||||
Sbjct 253 TCGCATGCTATGTTACTGTCAGAGGTGAGAAGGCAATGCAACTACTTGAAAGTGGATTGA 312
Query 358 AAGTTAAAGAATACGAACT-CTTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTT 416
||||||| ||||||| ||| || ||||| |||||||| |||||||||| ||| ||||||
Sbjct 313 AAGTTAAGGAATACGTACTTCTC-AGAAGAAACTTCAGTGACACTGGTTCCTTCGGTTTT 371
Query 417 GGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGC 476
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 372 GGTATTCAAGAACACATTGATTTGGGTATCAAGTATGATCCATCAACTGGAATCTACGGT 431
Query 477 ATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGC 536
|||||||||||||| || || || || || ||||||||||| || || ||||||||||||
Sbjct 432 ATGGACTTCTATGTAGTCCTAGAACGTCCTGGTTACCGTGTGGCACGTCGCAGAAGATGC 491
Query 537 AAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAG 596
||| |||||||||| ||||| || ||||| || ||||| || || ||||||||||||||
Sbjct 492 AAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGAGGCAATGAAATGGTTCCAA 551
Query 597 GTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATCACTGGTTAAACAAA 652
|||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 552 GTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCTAAA-AAA 606
> Ahg948390 jgi|Araly1|948390|scaffold_800277.1
Length=639
Score = 616 bits (333), Expect = 1e-175
Identities = 482/555 (87%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 97 AAATGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGG 156
|||||||||||||||||||||| || ||||| |||||||||||||| || ||||| || |
Sbjct 32 AAATGGCGTCGGAGAAGAAGCTCTCAAACCCCATGAGGGACATTAAGGTTCAGAAACTTG 91
Query 157 TTCTCAACATCTCCGTTGGTGAGAGTGGAGATCGTCTCAC-CAGAGCCTCCAAGGTGTTG 215
|||||||||| ||||||||||||||||| ||||||||||| | | ||||| |||||||||
Sbjct 92 TTCTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTC-GTGCCTCAAAGGTGTTG 150
Query 216 GAACAATTGAGTGGTCAGACTCCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTT 275
||||| | |||||||| || ||||| ||||||||||| | |||||||| | ||||||
Sbjct 151 GAACAGCTCAGTGGTCAAACCCCTGTCTTCTCCAAGGCGAGGTACACTGTGAGGTCTTTT 210
Query 276 GGTATAAGACGTAATGAGAAGATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATG 335
||||| || ||||||||||||||||| || ||||||||||| || || ||||||||||||
Sbjct 211 GGTATTAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATG 270
Query 336 CAGCTCCTTGAGAGTGGATTGAAAGTTAAAGAATACGAAC-TCTTGAGAAGGAACTTCAG 394
||||| ||||||||||| ||||||||||| || || || | |||| || |||||||| ||
Sbjct 271 CAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTT-AGGAGGAACTTTAG 329
Query 395 CGACACTGGTTGCTTTGGTTTTGGTATTCAAGAGCACATTGAT-TTGGGTATCAAGTATG 453
||||||||||||||||| |||||||| ||||||||||||||| || || ||||||||||
Sbjct 330 TGACACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTT-GGAATCAAGTATG 388
Query 454 ATCCATCGACTGGAATCTACGGCATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACC 513
|||| || ||||| |||||||| |||||||| || ||||| ||||| || ||||| ||||
Sbjct 389 ATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAACGCCCAGGATACC 448
Query 514 GTGTTGCGCGCCGCAGAAGATGCAAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAG 573
|||| || || ||| ||||||||||| |||||||||| || ||||| ||||| || || |
Sbjct 449 GTGTGGCTCGTCGCCGAAGATGCAAGGCTCGTGTTGGTATTCAGCACAGAGTAACTAAGG 508
Query 574 ATGATGCCATGAAATGGTTCCAGGTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGA 633
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 509 ATGATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATTCTCAACAAGTCTCAGA 568
Query 634 ACATCACTGGTTAAA 648
|||||||||||||||
Sbjct 569 ACATCACTGGTTAAA 583
> Ahg946318 jgi|Araly1|946318|scaffold_702547.1
Length=608
Score = 584 bits (316), Expect = 3e-166
Identities = 486/569 (85%), Gaps = 7/569 (1%)
Strand=Plus/Plus
Query 81 TCGCAAC-CCTAATC-CGAAATGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACA 138
||| ||| ||||||| || |||||||||||||||||||| |||||||| |||||||| |
Sbjct 21 TCG-AACTCCTAATCTTGAGATGGCGTCGGAGAAGAAGCTCTCGAACCCTATGAGGGATA 79
Query 139 TTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGTGAGAGTGGAGATCGTCTCAC-C 197
|||| || |||||||| ||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 80 TTAAGGTTCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTC 139
Query 198 AGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACTCCTGTTTTCTCCAAGGCTCGA 257
| |||||||||||||||||||| | |||||||| || ||||| ||||| ||||| |
Sbjct 140 -GTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAAACCCCTGTCTTCTCTAAGGCGAGG 198
Query 258 TACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAGATTGCTTGCTATGTGACTGTC 317
|||||||| | ||||||||||| || |||||||| |||||||| |||||||| || ||
Sbjct 199 TACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTG 258
Query 318 AGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTGAAAGTTAAAGAATACGAACTC 377
|| || ||||||||||||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct 259 AGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTG 318
Query 378 TTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTTGGTATTCAAGAGCACATTGAT 437
||||| ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 319 TTGAGGAGGAACTTCAGTGACACTGGCTGCTTTGGATTCGGTATCCAGGAGCACATTGAT 378
Query 438 -TTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGCATGGACTTCTATGTTGTTCT 496
|| || |||||||||||||| || || || |||||||| ||||| ||||| ||||||||
Sbjct 379 CTT-GGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATGGATTTCTACGTTGTTCT 437
Query 497 TGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGCAAGACTCGTGTTGGAATCCA 556
||| || || || ||||||||||| || ||| | ||||||||| |||||||||| || ||
Sbjct 438 TGAACGCCCGGGATACCGTGTTGCCCGTCGCCGTAGATGCAAGGCTCGTGTTGGTATTCA 497
Query 557 GCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAGGTGAAATATGAAGGAGTCAT 616
|||||||| || || |||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 498 ACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTAT 557
Query 617 TCTCAACAAGTCTCAGAACATCACTGGTT 645
||||||||||||||||||||||||||||
Sbjct 558 CCTCAACAAGTCTCAGAACATCACTGGTT 586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5