BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58710.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486325 jgi|Araly1|486325|fgenesh2_kg.5__2317__AT3G58710.2 1386 0.0
Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1 100 2e-20
Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1 87.9 1e-16
Ahg944827 jgi|Araly1|944827|scaffold_701056.1 76.8 3e-13
> Ahg486325 jgi|Araly1|486325|fgenesh2_kg.5__2317__AT3G58710.2
Length=951
Score = 1386 bits (750), Expect = 0.0
Identities = 905/974 (93%), Gaps = 34/974 (3%)
Strand=Plus/Plus
Query 186 ATGCATCGTAGAGCAGCAATTCAAGAATCGGATGACGAAGAAGATGAGACTTACAACGAC 245
||||| ||| || ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGCACCGT--AG-AGCAATTCAAGAATCAGACGACGAAGAAGATGAGACTTACAACGAC 57
Query 246 GTCGTTCCTGAATCTCCTTCTTCTTGTGAAGACTCAAAGATCTCAAAACCAACTCCAAAG 305
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 58 GTCGTTCCTGAATCTCCTTCTTCTTGCGAAGACTCAAAGATCTCAAAACCAACTCCAAAG 117
Query 306 AAAAGTAGGAGGAACGTAGAGAAGAGAGTTGTCTCAGTTCCGATAGCTGACGTGGAAGGA 365
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 AAAAGTAGGAGGAACGTAGAGAAGAGAGTTGTCTCAGTTCCGATTGCTGACGTGGAAGGA 177
Query 366 TCTAAGAGCAGAGGCGAAGTATATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGA 425
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCTAAGAGTAGAGGCGAAGTATATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGA 237
Query 426 CAAAAACCGATCAAAGGCTCGCCTTATCCCAGGGGATATTACAGATGTAGTAGCTCAAAA 485
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 238 CAAAAGCCGATCAAAGGCTCGCCTTATCCAAGGGGATATTACAGATGCAGTAGCTCAAAA 297
Query 486 GGATGTCCGGCGAGGAAGCAGGTGGAGAGAAGCCGTGTGGACCCTTCTAAGCTTATGATT 545
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 298 GGATGTCCGGCGAGGAAGCAGGTGGAGAGAAGCCGTGTGGACCCTTCAAAGCTCATGATT 357
Query 546 ACTTACGCCTGCGACCACAATCACCCTTTCCCTTCCTCCTCCGCTAACACCAAATCCCAC 605
|||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||
Sbjct 358 ACTTACGCCTGCGACCACAACCACCCTTTCCCCTCCTCCTCCGCCAACAACAAATCCCAC 417
Query 606 CACCGCTCCTCCGTCGTCCTCAAAACCG-CAAAGAAAGAGGAAGAATACGAAGAGGAGGA 664
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct 418 CACCGCTCCTCCGTCGTCCTCAAAACCGCCAAA-AAAGAAGAAGAATACGAAGAAGAGGA 476
Query 665 AGAAGAACTAACCGTCACCGCCGCAGAGGAACCACCGGCGGGACTTGATCTAAGCCACGT 724
|||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 477 GGAAGAACTGACCGTCACCGCCGCAGAGGAACCGCCGGCAGGACTAGATCTGAGCCACGT 536
Query 725 AGACTCACCGTTGCTATTAGGCGGCTGCTACAGCGAAATCGGAGAGTTCGGGTGGTTCTA 784
|| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 537 TGATTCTCCGTTGCTCTTAGGTGGCTGCTACAGCGAAATCGGCGAGTTCGGGTGGTTCTA 596
Query 785 CGACGCGTCGATCTCATCATCATCTGGTTCTTCGAATTTCCTCGACGTAACTCTAGAGAG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGACGCGTCGATCTCATCATCATCTGGTTCTTCGAATTTCCTCGACGTAACTCTAGAGAG 656
Query 845 AGGTTTTTCAGTAGGCCAAGAGGAAGATGAGTCTTTGTTCGGTGATCTCGGTGATTTACC 904
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 AGGTTTTTCAGTAGGCCAAGAGGAAGATGAGTCTTTGTTCGGTGATCTCGGCGATTTACC 716
Query 905 TGATTGCGCCTCCGTGTTCCGCCGTGGGACTGTTGCGACGGAGGAGCAACATCGAAGATG 964
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 717 TGATTGCGCCTCCGTGTTCCGCCGTGGGACCGTTGCGACGGAGGAGCAACATCGGAGATG 776
Query 965 TGATTTTGGCGCCATTCCTTTCTGTGATAGTTCTAGATGAGTTTGTGTGTGTAGCCAAAA 1024
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 777 TGATTTTGGCGCCATTCCTTTCTGTGATAGTTCTAGATGAGT--GTGTGT--AGCCAAAA 832
Query 1025 CCAAAAGaaaaaaaCACAAtttttttATTTTCCACTGTAAAGGTGTATCAATGGTGGATT 1084
|||||| | ||||||| || |||||||||||||||||||||||||||||
Sbjct 833 CCAAAA--------C----TTTTTTT-TT--CCACTGTAAAGGTGTATCAATGGTGGATT 877
Query 1085 CAt-t--tt--ttt-A-A-AAAAGGAAA--CCCAAATAATAAATTTAATATCATTTGAGA 1134
||| | || ||| | | |||| ||| |||| |||||||||||||||||||||||||
Sbjct 878 CATATGATTCATTTTATATAAAAAAAAAAACCCAGATAATAAATTTAATATCATTTGAGA 937
Query 1135 GAATTCAAGTACAA 1148
||||||||||||||
Sbjct 938 GAATTCAAGTACAA 951
> Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1
Length=1346
Score = 100 bits (54), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 405 TGGGCCTGGAG-AAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGGGGA-T 462
||||| ||| | ||| ||||| |||||||| ||||||||||| |||||| ||| || | |
Sbjct 696 TGGGCTTGGCGTAAA-TACGGTCAAAAACCCATCAAAGGCTCTCCTTAT-CCAAGGAATT 753
Query 463 ATTACAGATGTAGTAGCTCAAAAGGATGT 491
|||||||||||||||||||||||||||||
Sbjct 754 ATTACAGATGTAGTAGCTCAAAAGGATGT 782
> Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1
Length=1298
Score = 87.9 bits (47), Expect = 1e-16
Identities = 87/105 (83%), Gaps = 8/105 (8%)
Strand=Plus/Plus
Query 411 TGGAGAAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGG-GGATATTACA- 468
||||| ||||||||||||||||||||||||||||| || |||| | | || |||||||
Sbjct 813 TGGAGGAAGTACGGACAAAAACCGATCAAAGGCTCACCACATCC-ACGAGGTTATTACAA 871
Query 469 GATGTAGTAGC-T-CAAAAGGATGTCCGGCGAGGAAGCAGGTGGA 511
| ||||||| | | || | |||||||| |||||||| || |||||
Sbjct 872 G-TGTAGTA-CATTCAGA-GGATGTCCAGCGAGGAAACACGTGGA 913
> Ahg944827 jgi|Araly1|944827|scaffold_701056.1
Length=1049
Score = 76.8 bits (41), Expect = 3e-13
Identities = 85/105 (81%), Gaps = 8/105 (8%)
Strand=Plus/Plus
Query 411 TGGAGAAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGG-GGATATTACA- 468
||||| ||||||||||||||||||||||||||||| || | |||| | || || ||||
Sbjct 801 TGGAGGAAGTACGGACAAAAACCGATCAAAGGCTCACCACA-CCCACGTGGTTACTACAA 859
Query 469 GATGTAGTAGC-T-CAAAAGGATGTCCGGCGAGGAAGCAGGTGGA 511
| || |||| | | || | |||||||| |||||||| || |||||
Sbjct 860 G-TGCAGTA-CATTCAGA-GGATGTCCAGCGAGGAAACACGTGGA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5