BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58720.2
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348938 jgi|Araly1|348938|fgenesh1_pg.C_scaffold_5002330 918 0.0
Ahg486325 jgi|Araly1|486325|fgenesh2_kg.5__2317__AT3G58710.2 78.7 7e-14
> Ahg348938 jgi|Araly1|348938|fgenesh1_pg.C_scaffold_5002330
Length=714
Score = 918 bits (497), Expect = 0.0
Identities = 563/595 (95%), Gaps = 3/595 (1%)
Strand=Plus/Plus
Query 241 AGATTTAGTACCACCATCACATACTCGGCATCAGATTCCAATCCGTAACAGCAACAACCT 300
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 117 AGATTTAGTACCACCATCACACACTCGGCATCGGATTCCAATCCGTAACAGCAACAACCT 176
Query 301 GCGAAGACAACACCTCGAGGCACTAAGACAAGCCGTTCACAACCAATCAACTAGACCCGA 360
|||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 177 ACGAAGACAGCACCTCGAGGCACTAAGACAAGCCGTTCACAACGAACCCGCTAGACCCGA 236
Query 361 GAGCAGCTCAAGATCATCATCACAAACCAATGAAGAAGACGAGATCCTCAAACATCTAAC 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 237 GAGCAGCTCAAGATCATCATCACAAACCAATGAAGAAGACGAAATCCTCAAACATCTAAC 296
Query 421 AAAAGAAACATATAACCCAGTTCCAAAAAGCACCCTTCTCAGAAGCCTGAGCTTATACTA 480
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAAAGAGACATATAACCCAGTCCCAAAAAGCACCCTTCTCAGAAGCCTGAGCTTATACTA 356
Query 481 CAGAAACAAAAACCCGGGAAGCGAAAGCTCAAGAAACACTCAAAATCTCTCAGGTGAAGA 540
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 357 CAGAAACAAAAACCCGGGAAGCGAAAACTCAAGAAACACTCAAGATCTCTCTGGTGAAGA 416
Query 541 AGACGACAAAAGATGCTCCGTGTGTTTAGAAGACTTCGAGCCCAAGGAAACAGTGATGCT 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGACGACAAGAGATGCTCCGTGTGTTTAGAAGACTTCGAGCCCAAGGAAACAGTGATGCT 476
Query 601 CACTCCTTGCAAACACATGTTTCACGAGGAATGTATAGTTCCATGGTTAAAGACCAAAGG 660
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 477 CACTCCTTGCAAACACATGTTTCATGAGGAATGTATAATTCCATGGTTAAAGACCAAAGG 536
Query 661 ACAATGTCCTGTCTGTAGATTCGTCATACTCAAGCCGACAAAACAAGACTCTTCTCCTCC 720
||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 537 ACAGTGTCCTGTCTGTAGATTCGTCATACTCAAGCCGGCAAAACAAGATTCTTCTC-TCA 595
Query 721 GGCTAATGGATCAAATCTCACCGGAGACATGACAACGAATGATCTCTTCACATTAGAGCT 780
|||||||||||||||| || |||||||||||| | |||||||||| |||||||||||
Sbjct 596 --CTAATGGATCAAATCTTGCCAGAGACATGACAATGGATGATCTCTTAACATTAGAGCT 653
Query 781 ACTCTCTGTGGTAAGAGCAATGGAAGAAACTTTCCTTTTCGGTAATCCTCGTCGC 835
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 654 ACTCTCTGTGGTAAGAGCAATGGAAGAAACTTTCCTTTTCGGTTATCCACGTCGC 708
Score = 189 bits (102), Expect = 3e-47
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 57 ATGGCTATTCCTCTGTTCCAAATCAACCCAATTATAGTTATGATTCGGATACACGATCGT 116
|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 ATGGCTATTCTTCTGCTCCAAATCAACCCAATTATAGTTATGATTCTGATACACGATCAT 60
Query 117 CGGGTTGGCGAGTTCCTGCTTTCTCTTCGCGGAATGCTTGGTCTAGGAGTAATTCAA 173
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CGGGTTGGCGAGTTCCTGCTTTCTCTTCGCGGAATGCTTGGTCCAGGAGTAATTCAA 117
> Ahg486325 jgi|Araly1|486325|fgenesh2_kg.5__2317__AT3G58710.2
Length=951
Score = 78.7 bits (42), Expect = 7e-14
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 851 TTGTACTTGAATTCTCTCAAATGATATTAAATTTATTATTTGGGT 895
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 951 TTGTACTTGAATTCTCTCAAATGATATTAAATTTATTATCTGGGT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5