BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58730.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938868 jgi|Araly1|938868|scaffold_503059.1 1365 0.0
> Ahg938868 jgi|Araly1|938868|scaffold_503059.1
Length=826
Score = 1365 bits (739), Expect = 0.0
Identities = 791/817 (97%), Gaps = 0/817 (0%)
Strand=Plus/Plus
Query 176 AGTTTTGAAATATGGCTGGCCAAAACGCGCGTTTGAATGTGGTTCCCACTGTTACTATGC 235
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 10 AGTTTTGAAAGATGGCTGGCCAAAACGCTCGTTTGAATGTGGTTCCCACTGTTACTATGC 69
Query 236 TCGGGGTTATGAAAGCTCGTCTTGTTGGCGCTACAAGAGGTCATGCTCTCCTCAAGAAAA 295
|||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 70 TCGGGGTTATGAAAGCCCGTCTTGTTGGAGCTACAAGAGGTCATGCTCTTCTCAAGAAGA 129
Query 296 AGAGTGATGCTTTAACTGTTCAGTTTAGGGCACTTCTCAAGAAAATCGTTACAGCTAAGG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 130 AGAGTGATGCTTTAACTGTTCAGTTTAGGGCACTTCTCAAGAAAATCGTTACAGCAAAGG 189
Query 356 AGTCTATGGGAGATATGATGAAGACATCGTCTTTTGCTCTTACCGAAGTAAAGTATGTTG 415
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 190 AGTCCATGGGAGATATGATGAAGACATCGTCGTTTGCTCTTACTGAAGTAAAGTATGTTG 249
Query 416 CTGGTGACAATGTCAAACATGTTGTCCTCGAGAACGTTAAAGAAGCTACTTTGAAGGTTC 475
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 250 CTGGTGAGAATGTCAAGCATGTTGTCCTCGAGAACGTTAAAGAAGCTACATTGAAGGTTC 309
Query 476 GTTCTCGGACAGAGAATATCGCTGGAGTGAAGCTGCCTAAGTTTGATCACTTCTCTGAAG 535
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GTTCTCGGACGGAGAATATTGCTGGAGTGAAGCTGCCTAAGTTTGATCACTTCTCTGAAG 369
Query 536 GTGAGACCAAGAATGACTTGACCGGTTTAGCTAGAGGTGGTCAACAGGTCCGAGCTTGCC 595
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 370 GCGAGACCAAGAATGACTTGACCGGTTTAGCTAGAGGTGGTCAACAGGTCCAAGCTTGCC 429
Query 596 GTGTTGCTTATGTGAAAGCCATTGAAGTTCTAGTTGAGCTTGCTTCTCTCCAGACTTCTT 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 430 GTGTTGCTTATGTGAAAGCCATTGAAGTTCTAGTTGAGCTTGCTTCTCTTCAGACTTCTT 489
Query 656 TCTTGACCCTTGATGAAGCAATCAAGACGACTAACCGTAGGGTCAACGCTCTGGAGAATG 715
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 490 TCTTGACGCTTGATGAAGCAATCAAGACGACTAACCGCAGGGTCAACGCTCTGGAGAATG 549
Query 716 TGGTGAAACCAAAGCTGGAGAATACAATCAGTTACATCAAGGGAGAGCTTGATGAGCTTG 775
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 550 TGGTGAAACCAAAGCTGGAGAATACGATCAGTTACATCAAGGGAGAGCTTGATGAGCTTG 609
Query 776 AGAGAGAGGATTTCTTCAGGTTGAAGAAGATTCAGGGATACAAGAGGAGGGAAGTCGAAC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AGAGAGAGGATTTCTTCAGGTTGAAGAAGATTCAGGGATACAAGAGGAGGGAAGTCGAAC 669
Query 836 GACAGGCAGCTAATGCTAAGGAGTTTGCTGAGGAAATGGTTCTTGAAGACATCTCTATGC 895
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 670 GACAGGCAGCTCATGCTAAGGAGTTTGCTGAGGAAATGGTTCTTGAAGGCATCTCTATGC 729
Query 896 AGAGAGGGATTTCGATAAACGCTGCTCGTAACTTCCTTGTTGGTGGTGCTGAGAAGGATT 955
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 730 AGAGAGGGATTTCGATAAACGCTGCTCGTAATTTCCTTGTTGGTGGTGCAGAGAAGGATT 789
Query 956 CAGACATTATTTTCTGAGGTGTGGGctctctctctct 992
||||||| |||||||||||||||||||||||||||||
Sbjct 790 CAGACATCATTTTCTGAGGTGTGGGCTCTCTCTCTCT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5