BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58740.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898830 jgi|Araly1|898830|Al_scaffold_0005_2796 2122 0.0
Ahg486329 jgi|Araly1|486329|fgenesh2_kg.5__2321__AT3G58750.1 1779 0.0
Ahg483376 jgi|Araly1|483376|fgenesh2_kg.4__2436__AT2G42790.1 1164 0.0
> Ahg898830 jgi|Araly1|898830|Al_scaffold_0005_2796
Length=1443
Score = 2122 bits (1149), Expect = 0.0
Identities = 1349/1447 (93%), Gaps = 8/1447 (1%)
Strand=Plus/Plus
Query 65 ATGGAGATTTCGGAGAGAGCTAGAGCTCGATTAGCCGTTCTCAATGCGCACTTGACAGTA 124
||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| | | |
Sbjct 1 ATGGAGATTCCGGAGAGAGCTAGCGCTCGATTAGCCGTTCTCACTGCGCACTTGGCGGCA 60
Query 125 TCTGAGCCGAATCAGGTGTTGCCAG-CGATCGAACCATGGTGCACATCGGCTCACATAAC 183
|||||||||| |||||||||||| | ||||||| || ||||||||||| ||||||| |
Sbjct 61 TCTGAGCCGACTCAGGTGTTGCC-GACGATCGAGCCGTGGTGCACATCATCTCACATTAG 119
Query 184 CGCTGCACCGCATGGATCGCTTAAAGGAAATTTGAAGATCGTCGATGAGCGTACGGGGAA 243
||| ||||||||||||| ||| ||||||| |||| ||||||||| || |||||||| ||
Sbjct 120 TGCTACACCGCATGGATCCCTTGAAGGAAACTTGACGATCGTCGACGAACGTACGGGTAA 179
Query 244 TGAATATCAGGTCCCAGTCTCAGAGCATGGTACCGTTAAAACCGTTGATCTCAAGAAGAT 303
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 AAAATATCAGGTCCCTGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGAT 239
Query 304 AACGACAGGGAAGGATGACAAGGGGCTTAACTTATACGATCCTGGTTACTTAAACACGGC 363
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 AACGACAGGGGAGGATGACAAGGGGCTTAAGTTATACGATCCTGGTTACTTAAACACGGC 299
Query 364 TCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATG-AGGGAATCCTACGTTATCGGG 422
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||
Sbjct 300 TCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGG-ATCCTCCGTTACCGGG 358
Query 423 GATACCCAGTTGAGGAGTTGGCTGAGAAAAGTACTTATACAGAGGTTACTTATCTCCTAA 482
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATACTCAGTCGAGGAGTTGGCTGAGAAAAGTACTTATACAGAGGTTACTTATCTCCTAA 418
Query 483 TTTATGGGAATCTGCCTTCTCAAAGACAGCTAGCTGATTGGGAGTTTGCGATTTCTCAGA 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTATGGGAATCTGCCTTCTCAACGACAGCTAGCTGATTGGGAGTTTGCGATTTCTCAGA 478
Query 543 ATTCAGCTGTGCCACAAGGAGTATTGGATATGATACAGTCCATGCCTAATGATGTACATC 602
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 479 ATTCAGCTGTGCCACAAGGAGTATTGGATCTCATACAGTCCATGCCTCATGATGTACATC 538
Query 603 CAGTAGGAGCTCTTGTCACTGCAATGAGTGCACTTTCCATCTTTTATCCTGATGCAAATC 662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAATAGGAGCTCTTGTCACTGCAATGAGTGCACTTTCCATCTTTTATCCTGATGCAAATC 598
Query 663 CGTCTCTTATGGGCCTAGGTGTTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTC 722
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 599 CTTCTCTTATGGGCCTAGGTGTTTACCAGTCAAAACAAGTTCGTGATAAACAGATTTTTC 658
Query 723 GTGTTCTTGGACAGGCCCCAACAATTGCAGCAGCTGCTTATTTGAGGAAGGCAGGCAAGC 782
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTATTCTTGGACAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGAAGGCAGGCAAGC 718
Query 783 CTCCTGTTCAACCTTTGAGCAACCTTTCTTATTCAGAGAATTTCCTCTATATGGTGGAAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTCCTGTTCAACCTTTGAGCAACCTTTCTTATTCAGAGAATTTCCTCTATATGGTGGAAT 778
Query 843 CAATGGGAGATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCT 902
|||||||| ||| ||||||||||||||||||||| | ||||||||| ||||||| |||
Sbjct 779 CAATGGGAAATAAGTCTTACAAGCCTAATCCTCGGCTAGCTCGAGTGTTGGACATTATCT 838
Query 903 TCATACTGCAAGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCTAGGCACCTTTCCT 962
|||| ||||| | ||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 839 TCATTCTGCATGTTGAACATGAGATGAACTGCTCTACTGCTGCTGCTCGGCATCTTTCCT 898
Query 963 CTAGTGGTGGTGATGTGTATACTGCTGTTTCGGGAGGTGTTGGAGCCATTTATGGTCCCC 1022
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 899 CTAGTGGTGTTGATGTGTATACTGCTGTTGCGGGAGGTGTTGGAGCCATTTATGGTCCAC 958
Query 1023 TTCATGGTGGTGCAGTTGAGGCTACGATTAACATGTTATCAGAGATTGGGACTGTTGAAA 1082
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 959 TTCATGGTGGTGCAATTGAGGCTACGGTTAACATGTTATCAGAGATTGGCACTGTTGAAA 1018
Query 1083 ATATTCCAGAGTTCATTGAAAGCGTGAAGAATAAGAAGAGGAGGTTGTCGGGTTTTGGAC 1142
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1019 ATATTCCAGAGTTCATTGAAAGCGTGAAGAATAAGAAGAGGAAGTTGTCGGGTTTTGGTC 1078
Query 1143 ACCGCATTTACAAAAACTACGATCC-CAGAGGAAAAGTCGTTAAGAAACTGGCGGATGAA 1201
|||| |||||||||| |||||||| | |||||||||||||||| |||||||||||| ||
Sbjct 1079 ACCGTGTTTACAAAAAATACGATCCTC-GAGGAAAAGTCGTTAAAAAACTGGCGGATCAA 1137
Query 1202 GTGTTCTCCATTCTTGGAAGGGATCCTCTGGTTGAGGTAGGAGATGCTCTAGAGAAGGCG 1261
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1138 GTGTTCTCCATTCTTGGAAAGGATCCTCTGTTTGAGGTAGGAGATGCTCTAGAGAAGGCG 1197
Query 1262 GCACTTTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCT 1321
||||| || ||||||||||| |||| |||||||| |||||||||| |||||||||||||
Sbjct 1198 GCACTCTCGGATGAATATTTCATTAAAAGAAAGCTTTACCCAAATGCTGATTTCTACTCT 1257
Query 1322 GGATTAATCAATAGGGCAATGGGAATCCCATCATCATTCACCGCAGTATCACGTATCGCT 1381
||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 1258 GGATTAATCTATAGGGCAATGGGAATCCCATCATCATTCATGGCAGTCGCACGTATTGCT 1317
Query 1382 GGATACTTGTCACACTGGCGTGAGTCTTTAGATGATCCTGACACAAAGATCATGAGACCC 1441
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 GGATACTTGTCACACTGGCGTGAGTCGTTAGATGATCCTGACACAAAGATCATGAGACCC 1377
Query 1442 CAACAGGTCTATACTGGAGCGGGGATAAGGCATTACGAGAC-AGTGAGAGAAAGAACCAA 1500
|| ||||||||||||||| |||| |||||| ||||||| | ||||||||||||||||||
Sbjct 1378 CAGCAGGTCTATACTGGAATGGGGCTAAGGCGTTACGAG-CTAGTGAGAGAAAGAACCAA 1436
Query 1501 GCTGTGA 1507
|||||||
Sbjct 1437 GCTGTGA 1443
> Ahg486329 jgi|Araly1|486329|fgenesh2_kg.5__2321__AT3G58750.1
Length=1972
Score = 1779 bits (963), Expect = 0.0
Identities = 1368/1559 (88%), Gaps = 46/1559 (3%)
Strand=Plus/Plus
Query 50 TTTTTGAGGTGACAAATGGAGATTTCGGAGAGAGCT-AGAGCTCGATTAGCCGTTCTCAA 108
||||||||| || |||||||||||||| |||||| | | ||||||||||||||||||||
Sbjct 208 TTTTTGAGGGGAAAAATGGAGATTTCGCAGAGAG-TGAAAGCTCGATTAGCCGTTCTCAC 266
Query 109 TGCGCACTTGA-CAGTATCTG--A--G-CCGA----ATCAGGTGTTGCCAGCGATCGAAC 158
||||| || | | || |||| | | | || | ||||||||||| |||||||| |
Sbjct 267 CGCGCA-TTTAGCGGTGTCTGATACCGTCGGATTGGAACAGGTGTTGCCGGCGATCGAGC 325
Query 159 CATGGTGCACATCGGCTCACATAACCGCTGCACCGCATGGATCGCTTAAAGGAAATTTGA 218
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 326 CATGGTGCACATCGGCTCACATTACCGCTGCACCGCATGGATCGCTTAAAGGAAATTTGA 385
Query 219 AGATCGTCGATGAGCGTACGGGGAATG-AATATCAGGTCCCAGTCTCAGAGCATGGTACC 277
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 386 CGATCGTCGATGAGCGTACGGGGAA-GAAATATCAGGTCCCAGTCTCAGAGCATGGTACC 444
Query 278 GTTAAAACCGTTGATCTCAAGAAGATAACGACAGGGAAGGATGACAAGGGGCTTAACTTA 337
|||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 445 GTTAAAGCCGTTGATCTCAAGAAGATAACGACGGGGAAAGATGACAAGGGGCTTAAGTTG 504
Query 338 TACGATCCTGGTTACTTAAACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGA 397
|||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 505 TACGATCCAGGTTACTTGAACACGGCTCCGGTTCGATCTTCGATTTGTTACATCGACGGA 564
Query 398 GATGAGGGAATCCTACGTTATCGGGGATACCCAGTTGAGGAGTTGGCTGAGAAAAGTACT 457
||||| ||||||||||||||||||||||||||| | || || |||||||||| ||||||
Sbjct 565 GATGAAGGAATCCTACGTTATCGGGGATACCCAATCGAAGAATTGGCTGAGAGCAGTACT 624
Query 458 TATACAGAGGTTACTTATCTCCTAATTTATGGGAATCTGCCTTCTCAAAGACAGCTAGCT 517
| || |||||| |||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 625 TTTATTGAGGTTGCTTATCTCCTCATGTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCT 684
Query 518 GATTGGGAGTTTGCGATTTCTCAGAATTCAGCTGTGCCACAAGGAGTATTGGATATGATA 577
|||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 685 GATTGGGAGTTTACGGTTTCTCAGCATTCAGCTGTGCCACAAGGAGTATTGGATATCATA 744
Query 578 CAGTCCATGCCTAATGATGTACATCCAGTAGGAGCTCTTGTCACTGCAATGAGTGCACTT 637
|||||||||||| |||||| ||| ||| | |||| |||||| | ||| ||||||||||||
Sbjct 745 CAGTCCATGCCTCATGATGCACACCCAATGGGAGTTCTTGTGAGTGCCATGAGTGCACTT 804
Query 638 TCCATCTTTTATCCTGATGCAAATCCGT-CTCTTATG-GGCCTAGGTGTTTACAAGTCAA 695
|| |||||| |||||||||||||||| | |||||| | |||| || | ||||||||||||
Sbjct 805 TCTATCTTTCATCCTGATGCAAATCC-TGCTCTTA-GTGGCCAAGATATTTACAAGTCAA 862
Query 696 AACAAGTTCGTGATAAACAGATTGTTCGTGTTCTTGGACAGGCCCCAACAATTGCAGCAG 755
||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| |
Sbjct 863 AACAAGTTCGTGATAAACAGATTGTTCGTATTCTCGGAAAGGCACCAACAATTGCAGCGG 922
Query 756 CTGCTTATTTGAGGAAGGCAGGCAAGCCTCCTGTTCAACCTTTGAGCAACCTTTCTTATT 815
||||||||||||||| |||||||| ||||||||||| |||| | |||||||||||||||
Sbjct 923 CTGCTTATTTGAGGACGGCAGGCAGGCCTCCTGTTCTTCCTTCGGGCAACCTTTCTTATT 982
Query 816 CAGAGAATTTCCTCTATATGGTGGAATCAATGGGAGATAGGTCTTACAAGCCTAATCCTC 875
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 983 CAGAGAATTTCCTCTATATGCTGGATTCAATGGGAAATAGGTCTTACAAGCCTAATCCTC 1042
Query 876 GTTTGGCTCGAGTGCTGGACATCCTCTTCATACTGCAAGCTGAACATGAAATGAACTGCT 935
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1043 GTTTGGCTCGAGTGCTGGACATCCTCTTCATACTGCATGCTGAACATGAGATGAACTGCT 1102
Query 936 CTACTGCTGCTGCTAGGCACCTTTCCTCTAGTGGTGGTGATGTGTATACTGC-TGTTTCG 994
|||||||||||||| |||| ||| |||||||||||| ||||||||| ||||| || | |
Sbjct 1103 CTACTGCTGCTGCTCGGCATCTTGCCTCTAGTGGTGTTGATGTGTACACTGCTTG-TGCT 1161
Query 995 GGAGGTGTTGGAGC-CATTTATGGTCCCCTTCATGGTGGTGCAG-TTGAGGCTACGATTA 1052
|||| ||||||||| | |||||||||| ||||||||||| || | |||||| | |||
Sbjct 1162 GGAGCTGTTGGAGCGC-TTTATGGTCCACTTCATGGTGGCGC-GAACGAGGCTGTGCTTA 1219
Query 1053 ACATGTTATCAGAGATTGGGACTGTTGAAAATATTCCAGAGTTCATTGAAAGCGTGAAGA 1112
| |||||| ||||||||||||| | ||||||||||||||| ||||||||| |||||||||
Sbjct 1220 AGATGTTAGCAGAGATTGGGACAGCTGAAAATATTCCAGATTTCATTGAAGGCGTGAAGA 1279
Query 1113 ATAAG-AAGAGGAGGTTGTCGGGTTTTGGACACCGCATTTACAAAAACTACGATCCCAGA 1171
| || ||||||| | |||| ||||||||||| || ||||||||||||| || ||| ||
Sbjct 1280 A-CAGAAAGAGGAAGATGTCAGGTTTTGGACATCGTGTTTACAAAAACTATGACCCCCGA 1338
Query 1172 GGAAAAGTCGTTAAGAAACTGGCGGATGAAGTGTTCTCCATTCTTGGAAGGGATCCTCTG 1231
| ||||||| | || |||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 1339 GCAAAAGTCATAAAAAAACTGGCAGATGAAGTGTTCTCCATTGTTGGTAGGGATCCTCTC 1398
Query 1232 GTTGAGGTAGGAGATGCTCTAGAGAAGGCGGCACTTTCTGATGAATATTTTGTTAAGAGA 1291
| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1399 ATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGCACTGTCTGATGAATATTTTGTTAAGAGA 1458
Query 1292 AAGCTGTACCCAAATGTTGATTTCTACTCTGGATTAATCA-ATAGGGCAATGGGAATCCC 1350
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 1459 AAGCTGTACCCAAATGTTGATTTCTACTCTGGATTAAT-ATATAGGGCAATGGGATTCCC 1517
Query 1351 ATCATCATTCACCGCAGT---AT-C--A--C--G--TATCGCTGGATACTTGTCACACTG 1398
| || |||| | |||| || | | | | ||| |||||||||||||| |||||
Sbjct 1518 ACCAGAATTCTTCACAGTCCTATTCGCAGTCCCGCGTATGGCTGGATACTTGTCGCACTG 1577
Query 1399 GCGTGAGTCTTTAGATGATCCTGACACAAAGATCATGAGACCCCAACAGGTCTATACTGG 1458
||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1578 GCGTGAGTCGTTAGATGATCCTGACACTAGGATCATGAGACCCCAACAGGCCTATACTGG 1637
Query 1459 AGCGGGGATAAGGCATTACGAGACAGTGAGAGAAAGAACCA-AGCT-GTGATTC-GGATT 1515
|| | |||| |||||||||||| ||||||||||| |||| | | ||||||| || |
Sbjct 1638 AGTGTGGATGAGGCATTACGAGCCAGTGAGAGAACGAACGTTATCAAGTGATTCAGG-TA 1696
Query 1516 TGGATCAGTTGGGTCAAGTTTCCATTTCGAATGCATCAAGAAGGCGTT-AGCTGGGTCA 1573
|||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1697 CGGATAAGTTTGGTCAAGTTTCCATTTCGAATGCATCAAGAAGGCGTTTAGCTGGATCA 1755
> Ahg483376 jgi|Araly1|483376|fgenesh2_kg.4__2436__AT2G42790.1
Length=3154
Score = 1164 bits (630), Expect = 0.0
Identities = 1250/1544 (81%), Gaps = 64/1544 (4%)
Strand=Plus/Plus
Query 64 AATGGAGATTTCGGAGAGAGCTAGAGCTCGATTAGCCGTTCTC-AATGCGCACTTGACAG 122
|||||||||||| ||||||| | ||||||||||||| ||||| | | ||| ||| | |
Sbjct 1 AATGGAGATTTCAGAGAGAGTTCGAGCTCGATTAGCTATTCTCTCA-GGGCATTTGGC-G 58
Query 123 TATCTGAGCCG-AATCAGGTGTT-GCCAGCGATCGAACCATGGTGCACATCGGCTCACAT 180
| || | || |||| || ||||||||||| | ||||||||| ||||| | |
Sbjct 59 GA----AG--GAAAACAGG-ATTCTCCAGCGATCGAGCGATGGTGCACGTCGGCGGATAC 111
Query 181 AACCGCT-GCACCGCATGGATCGCTT-AAAGGAA-ATTTGAAGATCGTCGATGAGCGTAC 237
| | | ||||||| |||||| || ||||||| | ||| ||||||||| || || ||
Sbjct 112 GAGTG-TCGCACCGCTTGGATC-TTTGAAAGGAACA-CTGACGATCGTCGACGAACGCAC 168
Query 238 GGGGAATGAA-TATCAGGTCCCAGTCTCAGA-GCATGGTACCGTTAAAACCGTTGATCTC 295
||||| || ||| | || || |||||||| | |||||||||||||| |||||||| ||
Sbjct 169 CGGGAA-AAAGTATAAAGTTCCGGTCTCAGATG-ATGGTACCGTTAAAGCCGTTGATTTC 226
Query 296 AAGAAGATAACGACAGGGAAGGATGACAAGGGGCTTAACTTATACGATCCTGGTTACTTA 355
|| |||||| | || |||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 227 AAAAAGATAGCTACCGGGAAGGAAGACAAGGGCCTTAAATTATACGATCCAGGTTACTTG 286
Query 356 AACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGA-GGGAATCCTACG 414
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 287 AACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGA-TCCTCCG 345
Query 415 TTATCGGGGATACCCAGTTGAGGAGTTGGCTGAGAAAAGTACTTATACAG-AGGTTACTT 473
||| || || |||||| ||||||| |||||||||| || |||| | | | |||| |||
Sbjct 346 TTACCGTGGCTACCCAATTGAGGAAATGGCTGAGAACAGCACTTTT-CTGGAGGTGGCTT 404
Query 474 ATCTCCTAATTTATGGGAATCTGCCTTCTCAAAGACAGCTAGCTGATTGGGAGTTTGC-G 532
|||| || || |||||||||||||| ||| |||| |||||| | |||||||||||||| |
Sbjct 405 ATCTTCTCATGTATGGGAATCTGCCCTCTGAAAGTCAGCTATCGGATTGGGAGTTTGCAG 464
Query 533 ATTTCTCAGAATTCAGCTGTGCCACAAGGAGTATTGGATATGATACAGTCCATGCCTAAT 592
|||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||| ||
Sbjct 465 -TTTCTCAGCATTCAGCTGTGCCACAAGGAGTATTAGATATTATACAGTCTATGCCTCAT 523
Query 593 GATGTACATCCAGTAGGAGCTCTTGTCACTGCAATGAGTGCACTTTCCATCTTTTATCCT 652
|||| ||| ||| | |||| |||||| | |||||||||||| |||||||||||| |||||
Sbjct 524 GATGCACACCCAATGGGAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCT 583
Query 653 GATGCAAATCC-GTCTCTTATGGGCCTAGG-TGTTTACAAGTCAAAACAAGTTCGTGATA 710
||||||||||| | |||||| ||||| ||| | ||||| | || ||||||||| | ||||
Sbjct 584 GATGCAAATCCTG-CTCTTAGGGGCC-AGGATATTTACGATTCTAAACAAGTTAGAGATA 641
Query 711 AACAGATTGTTCGTGTTCTTGGACAGGCCCCAACAATTGCAGCAGCTGCTTATTTGAGGA 770
|||| ||| |||| || ||||| |||| || ||||||||||||||||||||| ||||||
Sbjct 642 AACAAATTATTCGCATTATTGGAAAGGCACCTACAATTGCAGCAGCTGCTTATCTGAGGA 701
Query 771 AGGCAGGCAAGCCTCCTGTTCAACCTTTGAGCAA-CCTTTCTTATTCAGAGAATTTCCTC 829
|||||| | ||||||||||| || | || || |||| ||||| |||| |||||||||
Sbjct 702 TGGCAGGGAGGCCTCCTGTTCTTCCCTC-AGGAAACCTTCCTTATGCAGATAATTTCCTC 760
Query 830 TATATGGTGGAATCAATGGGAGATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTG 889
|||||| |||| || ||||| |||| || ||||| ||||||||||| ||||||| ||
Sbjct 761 TATATGCTGGATTCCCTGGGAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTT 820
Query 890 CTGGACATCCTCTTCATACTGCAAGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCT 949
|||||||||||||||||||||| || || ||||||||||||||||| || |||||||||
Sbjct 821 TTGGACATCCTCTTCATACTGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCT 880
Query 950 AGGCACCTTTCCTCTAGTGGTGGTGATGTGTATACTGCTGTTTCGGGAGGTGTTGGAGC- 1008
| || ||| ||||||| |||| ||||||||| ||||||||| | |||| ||| |||||
Sbjct 881 CGACATCTTGCCTCTAGCGGTGTTGATGTGTACACTGCTGTTGCTGGAGCTGTGGGAGCG 940
Query 1009 CATTTATGGTCCCCTTCATGGTGGTGCAGTTGAGGCTACGATTAACATGTTATCAGAGAT 1068
| |||||||||| ||||||||||||||| |||||| | |||| ||||| ||||||||
Sbjct 941 C-TTTATGGTCCACTTCATGGTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGAT 999
Query 1069 TGGGACTGTTGAAAATATTCCAGAGTTCATTGAAAGCGTGAAGAATAAGAAGAGGAGGTT 1128
|||||||||||||||||||||||||||||| || | |||||||| | |||||||| | |
Sbjct 1000 TGGGACTGTTGAAAATATTCCAGAGTTCATCGAGGGTGTGAAGAACAGGAAGAGGAAGAT 1059
Query 1129 GTCGGGTTTTGGACACCGCATTTACAAAAACTACGATCC-CAGAGGAAAAGTCGTTAAGA 1187
||| |||||||||||||| | ||||||||||| || || | ||| |||||| | ||||
Sbjct 1060 GTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCTC-GAGCTAAAGTCATCAAGA 1118
Query 1188 AACTGGCGGATGAAGTGTTCTCCATTCTTGGAAGGGATCCTCTGGTTGAGGTAGGAGATG 1247
| ||||| |||||||| || |||||| |||||| ||||||||| ||||||||| | ||
Sbjct 1119 ACCTGGCTGATGAAGTATTTTCCATTGTTGGAAAGGATCCTCTAATTGAGGTAGCTGTTG 1178
Query 1248 CTCTAGAGAAGGCGGCACTTTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATG 1307
|||| |||||||| || || ||||| || || ||||||||||||||||| || |||||||
Sbjct 1179 CTCTTGAGAAGGCAGCTCTCTCTGACGATTACTTTGTTAAGAGAAAGCTTTATCCAAATG 1238
Query 1308 TTGATTTCTACTCTGGATTAATCA-ATAGGGCAATGGGAATCCCATCA---T-CATTCAC 1362
||||||||||||| |||||||| | | |||||||||||| | ||| || | | |||||
Sbjct 1239 TTGATTTCTACTCCGGATTAAT-ATACAGGGCAATGGGATTTCCACCAGAGTTC-TTCAC 1296
Query 1363 CG-C--AGT----AT-CA-CGTATCGCTGGATACTTGTCACACTGGCGTGAGTCTTTAGA 1413
| | | | || | || || |||||||||||||| || ||| ||||| || ||
Sbjct 1297 GGTCTTATTCGCGATTCCTCGCATGGCTGGATACTTGTCGCATTGGAAAGAGTCGTTGGA 1356
Query 1414 TGATCCTGACACAAAGATCATGAGACCCCAACAGGTCTATACTGGAGCGGGGATAAGGCA 1473
|||||||||||| |||||||||||||| |||||||| || || || | | || | |||||
Sbjct 1357 TGATCCTGACACCAAGATCATGAGACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCA 1416
Query 1474 TTACGA-GACAGTGAGAGAAAGAACCAAG-CTG-TGATTCG---GATTTGGATCAG-TTG 1526
|||| | | |||||||||| |||| | | | ||| || || | ||| || |||
Sbjct 1417 TTAC-ACGCCAGTGAGAGAGAGAATTGTGACGGATGACTCTAAAGAGTCGGA-CAAATTG 1474
Query 1527 GGTCAAGTTTCCATTTCGAATGCATCAAGAAGGCGTTAG-CTGG 1569
|||||||| || | ||| |||||||||||||| |||| | ||||
Sbjct 1475 GGTCAAGTCTCGACTTCAAATGCATCAAGAAGACGTTTGGCTGG 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5