BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58760.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898832 jgi|Araly1|898832|Al_scaffold_0005_2798 2146 0.0
> Ahg898832 jgi|Araly1|898832|Al_scaffold_0005_2798
Length=1425
Score = 2146 bits (1162), Expect = 0.0
Identities = 1344/1427 (94%), Gaps = 31/1427 (2%)
Strand=Plus/Plus
Query 43 ATGACGATTAAGCCTAAATCGCCGGCGAGATTCAAGCTAGGTAGGCAGTCTTCGCTTGCG 102
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 ATGACGATTAAGCCTAAATCGCCGGCGAGATTCAAGCTAGGGAGGCAATCTTCGCTTGCG 60
Query 103 CCGGAATCAAGAACCCCGATTGATACGTTAACGGAAGATGAGGACGACGACTTGGCTGCG 162
|||||||||||||||||||| || |||||||||||||||||||||||||| || | |||
Sbjct 61 CCGGAATCAAGAACCCCGATAGAGACGTTAACGGAAGATGAGGACGACGAGTT-G--GCG 117
Query 163 GCGGCTACAGCTGGGATCGGGGATCCGACGATTCGTTTAATGTATTTAGCCAACGAAGGT 222
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 118 GCGGCTACAGCTGGGATCGTGGATCCGACGATTCGTCTAATGTATTTAGCCAACGAAGGT 177
Query 223 GATATCGATGGCATCAATAAGATGCTTGATTCGGGTACTAATGTTGATTACCGTGACATC 282
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 GATATCGATGGGATCAACAAGATGCTTGATTCGGGAACTAATGTTGATTACCGTGACATC 237
Query 283 GATGCCCGTACTGCTCTTCACGTCGCCGCTTGTCAAGGACGAACCGATGTCGTTGAGCTG 342
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GATGGCCGTACTGCTCTTCACGTCGCCGCTTGTCAGGGACGAACCGATGTCGTTGAGCTG 297
Query 343 CTGCTTAGCCGTGGTGCTAAGGTTGATACGAAGGACCGATGGGGTAGTACGCCTCTTGCA 402
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGCTTCGCCGTGGTGCTAAGGTTGATACGAAGGACCGATGGGGTAGTACGCCTCTTGCA 357
Query 403 GATGCAGTGTATTACAAAAATCATGATGTGATTAAACTTTTGGAGAAACATGGTGCTAAG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGCAGTGTATTACAAAAATCATGATGTGATTAAACTTTTGGAGAAACATGGTGCTAAG 417
Query 463 CCTACGATTGCTCCTATGCATGTCCTAACTGATAAAGAAGTTCCAGAGTACGAGATTCAT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCTACGATTGCTCCTATGCATGTCCTAACTGATAAAGAAGTTCCAGAGTACGAGATTCAT 477
Query 523 CCTACAGAGCTTGATTTTTCCAACTCTGTCAAAATTTCAAAGGGTACCTTTAACAAGGCT 582
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 478 CCCACAGAGCTTGATTTTTCTAACTCTGTCAAAATTTCAAAGGGTACCTTTCACAAGGCT 537
Query 583 TCATGGCGTGGAATTGACGTGGCTGTTAAAACCTTTGGAGAGGAAATGTTCACTGATGAA 642
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 TCATGGCGTGGAATTGACGTGGCTGTGAAAACCTTTGGAGAGGAAATGTTCACTGATGAA 597
Query 643 GACAAAGTGAATGCATTTAGGGACGAACTTGCACTGCTTCAAAAGATACGCCATCCGAAT 702
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 GACAAAGTGAATGCGTTTAGGGACGAACTTGCACTGCTTCAAAAGATACGCCATCCAAAT 657
Query 703 GTTGTTCAGTTTCTAGGG-GCAGTTACTCAGAGTACCCCCATGATGATTGTCACCGAGTA 761
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 GTTGTCCAGTTTCT-GGGAGCAGTTACTCAGAGTACCCCCATGATGATTGTCACAGAGTA 716
Query 762 TTTACCAAAGGGAGATCTTCGACAATATCTAGACAGGAAAGGACCTCTAATGCCAGCACA 821
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 TTTACCCAAGGGGGATCTTCGACAATATCTAGACAGGAAAGGACCTCTAATGCCAGCGCA 776
Query 822 CGCAGTGAAGTTCGCCCTTGAAATTGCTAGG----G-G---A---------A-TGAATTA 863
|||||||| ||||||||||||||||||||| | | | | |||||||
Sbjct 777 TGCAGTGAAATTCGCCCTTGAAATTGCTAGGTTAAGTGGCTATTTTCTGGGAATGAATTA 836
Query 864 TTTGCACGAACATAAACCTGAAGCAATAATCCATTGCGACCTAGAACCTCCAAACATACT 923
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTTGCACGAGCATAAACCTGAAGCAATAATCCATTGCGACCTAGAACCTCCAAACATACT 896
Query 924 GCGGGATGATTCGGGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTGCTGGTAGT 983
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 GAGGGATGATTCGGGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTACTGGTAGT 956
Query 984 TAAGAAGACAGTTAAAAAAGACAGACCTGTTGTTACATGC-TTGGACAGTTCATGGCGAT 1042
||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||| |
Sbjct 957 TAAGAAGACAGTTAAAAAAGACAGACCTGTT---ACAT-CATTGGACAGTTCTTGGCGGT 1012
Query 1043 ATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTT 1102
| ||||||||||| ||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 1013 ACATGGCTCCAGAAGTTTACAGAAACGAAGAGTATGATACAAAAGTAGATGTATTTTCTT 1072
Query 1103 TCGCTTTAATCTTACAAGAGATGATAGAAGGTTGTGAACCATTTCATGAGATAGAAGACC 1162
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TCGCTTTGATCTTGCAAGAGATGATAGAAGGTTGTGAACCATTTCATGAGATAGAAGAAA 1132
Query 1163 GCGAAGTTCCTAAAGCATATATTGAAGATGAACGTCCACCATTCAATGCTCCAACAAAAT 1222
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1133 GCGAAGTTCCTAAAGCATATATTAAAGATGAACGTCCACCATTCAATGCACCAACAAAAT 1192
Query 1223 CATATCCTTTCGGGTTACAAGAGCTAATCCAGGATTGTTGGGACAAAGAAGCATCAAAAA 1282
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CATATCCTTTCGGGTTACGAGAGCTAATCCAGGATTGTTGGGACAAAGAAGCATCAAAAA 1252
Query 1283 GACCAACATTTAGAGTAATCATCTCTACTTTGGAGTTGATAAGTGATCGAATTGCACGCA 1342
||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1253 GACCAACGTTTCGAGAAATCATCTCTACTTTGGAGTTGATAAGTGATCGAATTGCAAGCA 1312
Query 1343 AAAGGAGCTGGAAGGTGATGCTAGGAAGATGCCTTCCAAGATTCAGATTGTTTACAAAGC 1402
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1313 AAAGGAGCTGGAAGGTGATGCTAGGAAGATGCATTCCAAGAATCAGATTGTTTACAAAGC 1372
Query 1403 GAGATTATGTGAATCCCGGTGGTAGTAACCGCTCATCAGGCTCATTC 1449
|||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 1373 GAGATTATGTGAATCC---TGGTAGTAACCGTTCATCACGCTCATTC 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5