BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58770.1
Length=2722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486331 jgi|Araly1|486331|fgenesh2_kg.5__2323__AT3G58770.1 3345 0.0
> Ahg486331 jgi|Araly1|486331|fgenesh2_kg.5__2323__AT3G58770.1
Length=2568
Score = 3345 bits (1811), Expect = 0.0
Identities = 2355/2603 (90%), Gaps = 96/2603 (4%)
Strand=Plus/Plus
Query 158 AAACTCTTGAAACctctttttctcatctc--tctatc-tacactttatctttcatctcct 214
||||||||||||||| ||||||||||||| |||||| || ||||| |||||||||||||
Sbjct 24 AAACTCTTGAAACCTTTTTTTCTCATCTCTGTCTATCTTA-ACTTTCTCTTTCATCTCCT 82
Query 215 tcatcgttctcttctcaAGATATCG---ATTCCT-TCA-ACTTTGTCTGATCCATGGAGG 269
||||||||||||| |||||| |||| |||||| | | ||||||| ||| |||||||||
Sbjct 83 TCATCGTTCTCTTGTCAAGAAATCGATTATTCCTCTTAGACTTTGTATGAACCATGGAGG 142
Query 270 TTGATTACGGTGGATTTTCTATCAGAGAGTACACGGAGAAGGTAAGGAGTGATAA-TGAA 328
||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 143 TTGATTACGGTGGATTTTCTATCAGAGAGTACACGAAGAAGGTAAGGAGTGA-AAGCGTG 201
Query 329 CGAAAATGCTGGCCGTTCGCCGGAGATCTTATTCAGTCTTTTCTTCCTCCCATTACTGTC 388
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 202 CGGAAATGCTGGCCGTTCGCCGGAGATCTTATTCAGTCGTTTCTTCCTCCGATTACTGTC 261
Query 389 TCCAAGTTCCGGTGGTGGTCGCATGAGCTTGCTTCTCTGCTTACGAAATCTCCGGTCTCT 448
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 262 TCCAAGTTCCGGTGGTGGTCGCATGAGCTAGCTTCTCTGCTTACGAAATCTCCGGTCTCT 321
Query 449 GTTGATGATTCTGATCCGTCCTTTCGTCGGAAGGCCAAAGCAAAGACTAGACAGTGTAAA 508
| | ||| |||| | | || || |||||||||||||| ||| || |||||||
Sbjct 322 G-T--TGA---TGAT---T-C--TCATC---AGGCCAAAGCAAAGTCTAAACCGTGTAAA 366
Query 509 AAGCGCTCCATCGTCGAAATTTGTGCGACGGCGCCGAAGATCCAGTTAGCAGAAGATTAT 568
||||| |||||| ||||||||||||||||||| ||||| |||||||| ||||||||| ||
Sbjct 367 AAGCGTTCCATCATCGAAATTTGTGCGACGGCACCGAAAATCCAGTTTGCAGAAGATCAT 426
Query 569 GTGGTGCACAAGAAGAAGATCAAAACCACGAAATCCAAAGATTCCGGT-GATCGGGAATT 627
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 427 GTGGTGCAC---AAGAAGATCAAAACCACGAAATCCAAAGATTCCGGTCG-TCGGGAATT 482
Query 628 CACTAACAAGGTTAA-C----CAATGCA-AAG---AACAAAAAGTGGATGATATTGGAAA 678
||||||||||||| | ||| | | ||| |||||||||||||| || ||||||
Sbjct 483 TGCTAACAAGGTTAATCAATTCAAAGAACAAGCTCAACAAAAAGTGGATCATGTTGGAAT 542
Query 679 ATGCAGTCTTGGAATTAAAGAAAGCTCTGGTGTTATGTCTCTTAGTAGCAAGAAGGCTGG 738
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 ATGCAGTCTTGGGATTAAAGAAAGCTCTGGTGTTATGTCTCTTAGTAGCAACAAGGCTGG 602
Query 739 ATTAGTCAGTAAAGATCATGATTCTGAGTTTCAGATTCCTGCAATTTTCAAGGCAAAACG 798
|||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 603 ATTATTCAGTAAAGAGCATGATTCTGAGTTTCAGATTCCTGCAATTTTTAAAGCAAAACG 662
Query 799 GAAAGTATGCTTTGCGAGGAGTCCTGATAAGTCAAAAACTCATGTGAGGTTCTCTGATCA 858
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 AAAAGTTTGCTTTGTTAGGAGTCCTGATAAGTCAAAAACTCATGTGAGTTTCTCTGATCA 722
Query 859 AAGTGGGAATCTTTCTCAGCTGGAGAAAAGTACCGTCTCTTTACAACTCTGCTGTTTGGA 918
| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 723 CACTGGAAATCTTTCTCAGCTGGAGAAAAGTACTGTCTCTTTAGAACTCTGCTGTTTGGA 782
Query 919 AATGAATAGGTTGAGTCTCTCTGAAAATCTTTCTCAGAGGAAGAATCAGTCATCTGTAAA 978
||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct 783 AATGAATAGGTTGAGTCTCTCTGGAAATCTTTCTCGGAGGAAGGATCCGTCATCTGTAAA 842
Query 979 TGACAAGCAACTGAAGGTTATGTCGACTGATCAGACTAGTACAGTTATGCATTTGGAAAC 1038
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 843 TGACAAGCAAGTGAAGGTTATGTCGACTGATCAGACTAGTACAGTTATGCATTTCGAAAC 902
Query 1039 AAGGCAACAATACAAGTTTCAGCCTGCGGTTTCAAAATCTCACTTGTCTTGTTTCCTTGG 1098
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 903 AAGGCAACAATACAAATTTCAGCCTGCGGTTTCAAAATCTGACTTGTCTTGTTTCCTTGG 962
Query 1099 ACCACATCTTAGTTCACAGGAAAGAGTAACGGATGCATTGGATTTGGAGAGAAAGGAATA 1158
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 963 ACCACATCTTAGTTCACAGGAAAGAGTAAATGATGCATTGGATTTGGAGAGAAAGGAACA 1022
Query 1159 TGTGGCTCAAGCTATTCAATCGTTTATCTCTACTTCGAGTGAGACTCCGTACAGAGCTTG 1218
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1023 TGTGGCTCAACCTATTCAATCGTTTATCTCTACTTCGAGTGAGAGTCCGTACAGAGCTTG 1082
Query 1219 TCCTTCTTTTTCTCAACCTGTGTCAGCTGATATGCACCGCGGGACATTGCTGTACCAATC 1278
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1083 TCCTTCTTTTTCTCAACCTGTGTCAGCTGATATGCACCGAGGGGCATTGCTGTACCAATC 1142
Query 1279 ACCTTTTGATCCACTTCCTACCGAATGGATGCAAAAATCAGTTTTAAATAGACAAAGGCA 1338
||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||
Sbjct 1143 ACCTTTTGATCCACTTCTTGTCGAATGGATGCAAAAATCAGCTTTATATAGACAAAGGCA 1202
Query 1339 TGTGGGAGAGGCGATCTTAGGGTTCCCTCTAGATCTACAGGGTGACCTAGTTGATGCGAA 1398
|||||||| |||||| |||||||||||||| || || |||||||||| |||||||| ||
Sbjct 1203 CGTGGGAGAAGCGATCCTAGGGTTCCCTCTAAATTTAGAGGGTGACCTTGTTGATGCAAA 1262
Query 1399 TGGAGAGACTTGTAGAAGTTTTGATCGGTCAGGTTTATGTACTAGTTTCTCTAAATCTGC 1458
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1263 TGGAGAGGCTAATAGAAGTTTTGATCGGTCAGGTTTATGTACTAGTTCCTCTAAATCTGC 1322
Query 1459 ATCTACAGGTAATGATCTTTTACTTGGAAATTTAGTGGAATTTTCCAGTGAAAAGAAGCA 1518
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1323 ATCTGCAGGGAATGATCTTTTACTTGGAAATTTAGTGGACTTTTCCAGTGAAAAGAAGCA 1382
Query 1519 TTTAATTGAGGCAGCACTTGCCAAAGACAATGCACCGCTTAATGAGAAACGCCACAAGTA 1578
|| || |||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1383 TTCAACTGAGCCAGCACTTGCCAAAGACAGTGCACCGCGTAATGAGAAACGCCACAAGTA 1442
Query 1579 CTTTCCTGCTAGGTTAGGCCTTGATGAGACCTTCACAGAGAAAGCATATTTAACAAACAC 1638
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1443 CTTTCCTGCTAGGTTAGGCCTTGATGAGACCTTTACAGAGAAAGCATATTTCACAAACAC 1502
Query 1639 TAATGATGGAGAGTGCGGCTACAC---AC---C---GGTTTCTGAAGTCAATCCGAGGAG 1689
|||||||||||||||||||||||| || | |||||||||||||||||| |||||
Sbjct 1503 TAATGATGGAGAGTGCGGCTACACTTTACATTCATCGGTTTCTGAAGTCAATCCAAGGAG 1562
Query 1690 CCACGCAATCAATATGTCAAAGC-GTAATGGTGTCAAACAGAACCTAAATAGCGGAAAGG 1748
|||| |||||||||||||||| | | | | |||||||||||||||||||||| |||||||
Sbjct 1563 CCACACAATCAATATGTCAAAACAG-AGTTGTGTCAAACAGAACCTAAATAGTGGAAAGG 1621
Query 1749 TGATTTTAAAGCGTGATGATTTGTGTTTACAAAACACTCAAGCAACAATGCGGCTGATGG 1808
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 TGATTTCAAAGCGTGATGATTTGTGTTTACAAAACACTCAAGCAACAATGCGGCTGATGG 1681
Query 1809 GTAAGGATGTTTCTGTCAGCACAAGTTACTCAGGTATGATTAGAACGGGTGAGAGGATCA 1868
|| |||||||||||||||||||||| || || ||| || | | ||
Sbjct 1682 GTCAGGATGTTTCTGTCAGCACAAGA-ACG--GGC--GAT-AG---G--T-------TCT 1723
Query 1869 TAGGACCGGATGCTTCTATAGATTATTCCTCTCTGGGGA-CCTATACTCATCAAAGCTGG 1927
||| ||||||||||||||||||||||||||||||||||| || ||||||| || ||||||
Sbjct 1724 TAGCACCGGATGCTTCTATAGATTATTCCTCTCTGGGGAGCC-ATACTCACCAGAGCTGG 1782
Query 1928 GTATGTCAAAGGACAACTCTTGAAGTTTCAGA-GAATCATTCAACCACAATATTGGATAA 1986
|||||||||||||||| |||||||||||| | || || ||||||||||| |||||||||
Sbjct 1783 CTATGTCAAAGGACAACACTTGAAGTTTCA-ATGAGTCCTTCAACCACAACATTGGATAA 1841
Query 1987 GAATTGGAACAAAGCTCTGCTACGTGATACTTCAAAAGATCCCTTTCCTTTGTTTTGTGA 2046
||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1842 GAATTGGAACAGAGCTTTGCTACGTGATACTTCAAAGGATCCCTTTTCTTTGTTTTGTGA 1901
Query 2047 ACCACTTGTCAGCTTGGCTTCTCAATCCAGAGCATATGCTG-TTCCTGATTCAGAATTTC 2105
||||| |||||||||||||||||||||||||||||||| | ||||||||||| | | |
Sbjct 1902 ACCACATGTCAGCTTGGCTTCTCAATCCAGAGCATATG-TAATTCCTGATTCA-A-T--C 1956
Query 2106 CTTCCACAATCCTGAATCCATGTTGCTCGCTCGCGTCTTTTCCTTTGTCTGAGAAGAATC 2165
|| |||||||||||||||||||| |||| |||| |||||||| ||| |||
Sbjct 1957 CT-----------GAATCCATGTTGCTCGCTCGTGTCTCTTCCATTGTCTGATAAGGATC 2005
Query 2166 TCAACTTCCATGGGTCTGGTTTAGGGCCACCAAACAGTTTCACACTCAGCCAGCAACAAC 2225
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2006 TCAACTTCCATGGATCTGGTTTAGGGCTACCAAACAGTTTCACATTCAGCCAGCAACAAC 2065
Query 2226 TACCTTTTCCATATGATTATAACAATGTTGATATTGGTCTCCTACCTGATGCTAGAAAAC 2285
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 TACCTTTTCCATCTAATTACAACAATGTTGATATTGGTCTCCTACCTGATGCTAGAAAAC 2125
Query 2286 GATCTTTCGGATTGCCTTTATCGAGTACAAATTCTGCTAGACGGTCACAGACTCCTTGGG 2345
|||||||||||||||||| ||| | | ||||| |||||||||||||| ||||||||
Sbjct 2126 CATCTTTCGGATTGCCTTTCTCGTGCGTAGATTCTACTAGACGGTCACAGGCTCCTTGGC 2185
Query 2346 CTCAAAGTTCATCTGAGAACTCTTGTTCTGAATTGTCTTTCGTCAACCCCAGCGAGCAAC 2405
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2186 CTCAAAGTTCATTTGAGAACTCTTGTTCTGAATTGTCTTTCATCAACCCCAGCGAGCAAC 2245
Query 2406 TAACGTCCTTCTATGGGTCAAGGTTATCTTCGTCCATAA-A--CGTTGGAACTACAAATA 2462
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 2246 TAACGTCCTTCTATGGGTCAAGTTTATCTTCGTCCATAATAAACGTTGGAACTACAAATA 2305
Query 2463 AGCGGGTAGCACCCGTAGAGGAGTATCCAATGAAGAACCATAAAGTCCCCAAGTTGCTGC 2522
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2306 AGCGGGTAGCACCCGTAGAGGAGTATCCAATGAAGAACCATAAAATCCCCAAGTTGCTGC 2365
Query 2523 CAATGCAAGGTGGCTTAAATTATGTTAAAGAATTTCTTTGCAGGCCAGCAAATTA-GGAA 2581
|||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2366 CAATGCAAGGTGGCATGAATTATGTTAAAGAGTTTCTTTGCAGGCCAGCAAATTAAGGAA 2425
Query 2582 ATCACTAA-TCTAGGAGTCTAAGGGTATATAGCCTTGTA-TTGTTTGAACCATCCCTTGT 2639
|||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2426 ATCAATAAATCTAGGAGTCTAAGGGTATATAACCTTGTAATTGTTTGAACCATCCCTTGT 2485
Query 2640 GTGTTTTATGAATTATTTGGTGTTAGTGCCTTACTCGGAATGAATTGTTGTACATGATTG 2699
|||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||
Sbjct 2486 GTGTTTTATGAATTATTTGGTGATAATGCCTTACTTGGAATGAATTGTTGTGCATGATTG 2545
Query 2700 CCTTGTTTAAGTCGTACAACACC 2722
||||||||| || ||||||||||
Sbjct 2546 CCTTGTTTAGGTAGTACAACACC 2568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102691300520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5