BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58780.3
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486333 jgi|Araly1|486333|fgenesh2_kg.5__2325__AT3G58780.1 976 0.0
Ahg321962 jgi|Araly1|321962|fgenesh1_pm.C_scaffold_4002019 388 6e-107
Ahg489841 jgi|Araly1|489841|fgenesh2_kg.6__2975__AT4G09960.3 180 4e-44
Ahg938876 jgi|Araly1|938876|scaffold_503067.1 147 4e-34
> Ahg486333 jgi|Araly1|486333|fgenesh2_kg.5__2325__AT3G58780.1
Length=1182
Score = 976 bits (528), Expect = 0.0
Identities = 605/640 (95%), Gaps = 14/640 (2%)
Strand=Plus/Plus
Query 624 TGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTC 683
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TGTGAGGGGAACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTC 613
Query 684 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGAT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGAT 673
Query 744 TCGAGATATTCAGAATTCAAATAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTT 803
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 674 TCGAGATATTCAGAATTCAAACAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTT 733
Query 804 CAAGGAACTCAAAAACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAA 863
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 734 AAAGGAGCTCAAAAACCTCGAAGGACGGCTTGAAAAAGGAATCAGCCGTGTCCGATCCAA 793
Query 864 AAAGAATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGGAAATGGAGTTGCA 923
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 AAAGAACGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGGAAATGGAGTTGCA 853
Query 924 ACACAATAACATGTACCTGCGAGCAAAGATAGCCGAAGGCGCCAGATTGAATCCGGACCA 983
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 854 ACACAATAACATGTACCTGCGAGCTAAGATAGCCGAAGGTGCCAGATTGAATCCGGAACA 913
Query 984 GCAGGAATCGAGTGTGATACAAGGGACGACAGTTTACGAATCCGGTGTATCTTCTCATGA 1043
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 914 GCAGGAATCGAGTGTGATACAAGGGACGACTGTTTACGAATCCGGTGTATCTTCTCATGA 973
Query 1044 CCAGTCGCAGCATTATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAATCAGCA 1103
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CCAGTCGCAGCATCATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAATCAGCA 1033
Query 1104 ATTCTCCGGCCAAGACCAACCTCCTCTTCAACTTGTGTAACTCAAAACATGATAACTTGT 1163
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1034 ATTCTCCGGCCAAGACCAACCTCCTCTTCAGCTTGTGTAACTCAAAACATGAAAACTTGT 1093
Query 1164 TTCTTCTCCTCATAACGATTAagagagagacgagagagTTCATTTTATATTTATAACGCG 1223
|||||| ||||| ||| ||||||||||| |||||||||||||||||| |||
Sbjct 1094 TTCTTCCCCTCAAAACTATTAAGAGAGA----------TTCATTTTATATTTATAATGCG 1143
Query 1224 ACTGTGT-A--TTCATAGTTTAGGTTCTAATAATGATAAT 1260
||| | | | |||||||||||||||| ||||||||||||
Sbjct 1144 ACT-TCTTAAATTCATAGTTTAGGTTCAAATAATGATAAT 1182
Score = 811 bits (439), Expect = 0.0
Identities = 524/561 (93%), Gaps = 21/561 (4%)
Strand=Plus/Plus
Query 1 GTTAGATGATCTGTCCAtttttttcttttttCTTCTGTGTATAAATATATTTGAGCACAA 60
||||||||||||||||| ||||||| ||||| || | |||||||||||||||||||||||
Sbjct 1 GTTAGATGATCTGTCCA-TTTTTTC-TTTTTATTTTATGTATAAATATATTTGAGCACAA 58
Query 61 AG-AAAAACTAATAACCTTCTGTTTTCAGCAAGTAGGGTCTTATAACCTTCAAAGAAATA 119
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 59 AGAAAAAACTAATAACCTTCTGTTTTCAGCAAGTAGGGTCTTATTACCTTCAAAGAAATA 118
Query 120 TTCCTTC--A-AT-TGAAAACCCATAAACCAAAATAGATATTACAAAAGGAAAGAGAGAT 175
||||||| | || || |||| |||||||||||| ||| ||||||||| |||||||||||
Sbjct 119 TTCCTTCAAATATATG-AAACTCATAAACCAAAACAGAAATTACAAAAAGAAAGAGAGAT 177
Query 176 A-TTTTCAAGAACAACATAATTAGAAAAGCAGAAGCAGCAGTTAAGTGGTACTGAGAT-- 232
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 ATTTTTCAAGAACAACATAATTAGAAGAGCAGAAGCAGCAGTTAAGTGGTACTGAGATAA 237
Query 233 A-AAT--GATATAGTTTCTCTTCAAGAACAGTTTCTCATTACCCACCTTCTCC-TTTTTG 288
| ||| ||||||||||||||| || |||||||||| ||||||||||||| ||||||
Sbjct 238 ATAATAATATATAGTTTCTCTTC---AA-AGTTTCTCATCACCCACCTTCTCCTTTTTTG 293
Query 289 CTGATCTATCGTAATCTTGAGAACTCAGGATCAATGGAGGAAGGTGGGAGTAGTCACGAC 348
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CTGATCTATCATAATCTTGAGAACTCAGGATCAATGGAGGAAGGTGGGAGTAGTCACGAC 353
Query 349 GCAGAGAGTAGCAAGAA-ACTAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACAC 407
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGAGAGAGTAGCAAGAAGA-TAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACAC 412
Query 408 AACAAATCGTCAAGTTACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGA 467
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AACAAATCGTCAAGTAACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGA 472
Query 468 ACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCT 527
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACTCTCAGTCTTGTGTGATGCGGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCT 532
Query 528 CTATGAGTACGCCAACAACAG 548
|||||||||||||||||||||
Sbjct 533 CTATGAGTACGCCAACAACAG 553
> Ahg321962 jgi|Araly1|321962|fgenesh1_pm.C_scaffold_4002019
Length=747
Score = 388 bits (210), Expect = 6e-107
Identities = 431/533 (81%), Gaps = 34/533 (6%)
Strand=Plus/Plus
Query 624 TGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTC 683
|||||| || ||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 228 TGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGAC 287
Query 684 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGAT 743
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||
Sbjct 288 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTTCGGAGACAGAT 347
Query 744 TCGAGATATTCAGAATTCAAATAGGCATATTGTTGGG-GAATCACTTGGTTCCTTGAACT 802
||| || |||||||||| || || |||||| | ||| ||||| ||||||||||||||||
Sbjct 348 TCGGGACATTCAGAATTTGAACAGACATATTCT-GGGTGAATCTCTTGGTTCCTTGAACT 406
Query 803 TCAAGGAACTCAAAAACCTAGAAGG-ACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCC 861
| ||||||||||| ||||| ||| | | | ||||| ||||||||| |||||||||||||
Sbjct 407 TTAAGGAACTCAAGAACCTTGAAAGTAGG-CTTGAGAAAGGAATCGGCCGTGTCCGCTC- 464
Query 862 AAA-AAGAATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGG-AAATG---- 915
||| ||| | ||| ||||||| |||||||| || || ||||| || |||| ||| |
Sbjct 465 AAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAAT 524
Query 916 -GAGTTGCAACACAATAACATGTACCTGCGAGCAAAGAT-AGCCGAAGGCGCCAGAT-TG 972
||| ||||| || |||||||||| || || | ||||| | | ||| | | || | |
Sbjct 525 CGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTA-CTGAAAGATC-AGGTCT- 581
Query 973 AATCCGGACCAGCAGGAATCGAGTGTGATACA--AGGGACGACAGTTTACGAATCCGGTG 1030
| | | | |||| ||||||||||||||||| | || |||||||||||| || ||||
Sbjct 582 A--CAG--C-AGCAAGAATCGAGTGTGATACATCAAGG--GACAGTTTACGAGTCGGGTG 634
Query 1031 T-ATCTTCT-CATGACCAGTC-GCAGCATTATAATCGGAACTATATTCCGGTGAACCTTC 1087
| | ||||| | | ||||||| | |||| || || ||||| ||||||||||| ||||| |
Sbjct 635 TTA-CTTCTTC-TCACCAGTCAG-AGCAGTACAACCGGAATTATATTCCGGTTAACCTGC 691
Query 1088 TTGAACCGAATCAGCAATTC-TCCGGCCAAGACCAACCTCCTCTTCAACTTGT 1139
||||||| |||||| ||| | ||| |||||||||||| ||||| ||||||||
Sbjct 692 TTGAACCAAATCAG-AATGCCTCCAACCAAGACCAACCACCTCTGCAACTTGT 743
> Ahg489841 jgi|Araly1|489841|fgenesh2_kg.6__2975__AT4G09960.3
Length=1133
Score = 180 bits (97), Expect = 4e-44
Identities = 155/182 (85%), Gaps = 7/182 (4%)
Strand=Plus/Plus
Query 370 GGG-AGAGGGAAA-ATAGAGATAAAGAGGATAGAGAACACAACAAATCGTCAAGTTAC-T 426
||| ||| ||||| ||||| |||||||||||||||||| |||||||||| ||||| || |
Sbjct 269 GGGAAGA-GGAAAGATAGAAATAAAGAGGATAGAGAACTCAACAAATCGACAAGTGACGT 327
Query 427 TTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGAACTCTCTGT-CTTGTGTGA 485
|| |||||| || | ||||| ||||| |||||||| ||||| || || || ||| || ||
Sbjct 328 TT-TGCAAAAGAAGAAATGGACTTCTGAAGAAAGCCTATGAGCTTTCGGTCCTT-TGCGA 385
Query 486 TGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAA 545
||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 386 TGCAGAAGTTGCGCTCATTGTCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAATAA 445
Query 546 CA 547
||
Sbjct 446 CA 447
> Ahg938876 jgi|Araly1|938876|scaffold_503067.1
Length=1657
Score = 147 bits (79), Expect = 4e-34
Identities = 81/82 (99%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 1812 ttctaatctgttttttagtctcagttcatgattttgcattttctAACGAAGATGTCGGAG 1871
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TTCTAATCTGTTTTTTAATCTCAGTTCATGATTTTGCATTTTCTAACGAAGATGTCGGAG 1598
Query 1872 GAATTTACGTATCTATACCAAA 1893
||||||||||||||||||||||
Sbjct 1597 GAATTTACGTATCTATACCAAA 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5