BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58790.1
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938876 jgi|Araly1|938876|scaffold_503067.1 2662 0.0
> Ahg938876 jgi|Araly1|938876|scaffold_503067.1
Length=1657
Score = 2662 bits (1441), Expect = 0.0
Identities = 1590/1663 (96%), Gaps = 6/1663 (0%)
Strand=Plus/Plus
Query 333 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCAGCGACGGGGATTAAGAAGGTTA 392
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCGGCGACGGGGATTAAGAAGGTTA 60
Query 393 CGATATCAAATCCCGGCGTCGGAATCGGTAAAGGAAGCGGAGGATGTGCGGCTGCAGCGG 452
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 61 CCATATCAAATCCCGGCGTCGGAATCGGAAAAGGAAGCGGAGGATGCGCGGCTGCAGCGG 120
Query 453 CGGCGTTAGCAGCGCGGAGATTCTCTAGTCGCACGTTGTTACTGTTGCTGCTGCTGCTCG 512
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 121 CGGCGTTAGCAGCGCGGAGATTCTCTGGTCGGACGTTGTTACTGTTGCTGCTGCTGCTCG 180
Query 513 CTATCGTCCTCCCTTTTATCTTCGTCAGGTTCGCGTTTCTCGTCCTCGAATCTGCCTCCG 572
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 181 CCATCGTCCTCCCTTTTATCTTCGTCAGATTCGCGTTTCTCGTCCTCGAATCCGCCTCCG 240
Query 573 TTTGCGATTCACCACTCGATTGCATGGGACTCAGACTTTTCCGTGGGGGCGACACATCTC 632
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TTTGCGATTCACCACTCGATTGCATGGGACTGAGACTTTTCCGTGGGGGCGACACATCTC 300
Query 633 TGAAAATTGGGGAAGAGTTGACACGGGCTCTAGTGGAAGAGACGACAGATCATCAGGACG 692
|||||||| |||||||||||||||| |||||||||| | ||| ||||| ||||||||
Sbjct 301 TGAAAATTCGGGAAGAGTTGACACGAGCTCTAGTGG-A-AGA-GACAG---ATCAGGACT 354
Query 693 TTAATGGAAGAGGAACGAAGGGATCATTGGAGTCATTCGACGACCTTGTTAAGGAGATGA 752
||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 355 TTAATGGAAGAGGAAAAAAAGGATCATTGGAGTCATTCGACGACCTTGTCAAGGAGATGA 414
Query 753 CGTTAAAACGCCGTGACATAAGGGCGTTTGCTTCCGTGACTAAGAAGATGCTGTTGCAGA 812
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 CGTTAAAACGCCGTGATATAAGGGCGTTTGCTTCCGTAACTAAGAAGATGCTGTTGCAGA 474
Query 813 TGGAACGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 872
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGGAGCGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 534
Query 873 ACGGTATTCCTAAAAGCCTCCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCTGTAA 932
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 535 ACGGTATTCCCAAAAGCCTTCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCGGTAA 594
Query 933 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAGTCCGTATCACGTCTGACCGACCCAT 992
|||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||
Sbjct 595 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAATCCGTCTCTCGTTTGACCGACCCAT 654
Query 993 CTTTTCATCATATTGTCCTCCTGACTGACAATGTCCTTGCTGCCTCTGTCGTCATATCGT 1052
||||||| ||||||||| || |||| ||||||||||| |||||||||||||||||||| |
Sbjct 655 CTTTTCACCATATTGTCATCTTGACCGACAATGTCCTGGCTGCCTCTGTCGTCATATCTT 714
Query 1053 CTACTGTACAAAACGCTGTGAATCCCGAGAAGTTTGTCTTTCATATTGTTACCGATAAGA 1112
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 715 CTACTGTACAGAACGCTGTGAATCCCGAGAAGTTCGTCTTTCATATTGTTACCGATAAAA 774
Query 1113 AAACCTATACCCCTATGCATGCTTGGTTTGCTATCAACTCTGCTTCATCACCAGTTGTTG 1172
||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
Sbjct 775 AAACCTATACCCCTATGCACGCTTGGTTTGCTATCAACTCTGCTTTATCGCCAGTTGTCG 834
Query 1173 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCAAGAAGTGAACTTCAAAGTTAGAGAGA 1232
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 835 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCGAGAAGTGAATTTCAAAGTTAGAGAGA 894
Query 1233 TGCTGGACATTCACCGCTTAATTTGGAGACGACATTATCAAAATTTGAAAGACTCTGATT 1292
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 895 TGCTGGACATTCACCGCTTGATTTGGAGACGGCATTATCAAAATTTGAAAGACTCTGATT 954
Query 1293 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTTG 1352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 955 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTCG 1014
Query 1353 CCCTTTTGAACCATCTTCGCATTTACATTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1412
|||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1015 CCCTTTTGAATCATCTTCGCATCTACGTTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1074
Query 1413 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATC 1472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1075 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCATCTTTATGGGAAACGGATC 1134
Query 1473 TCAACGGTAAAGTTGTTGGTGCTGTCGTTGATTCGTGGTGCGGAGACAACTGTTGCCCCG 1532
|||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1135 TCAATGGTAAAGTTGCTGGTGCTGTCGTTGATTCGTGGTGCGGAAACAACTGTTGCCCGG 1194
Query 1533 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTTTGATCTCATCAAACTTAGTTC 1592
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTCTGATCTCATCAAACTTAGTTC 1254
Query 1593 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1314
Query 1653 CCAATATTACTGAAGCTTACTCTACATGGCTAAGACTCAGTGTTAGGTCAGGACTACAAT 1712
||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1315 CCAATATCACAGAAGCTTACTCTACATGGTTAAGACTCAGTGTTAGTTCAGGACTACAAT 1374
Query 1713 TATGGCAACCAGGGGCTTTACCACCGACATTACTTGCTTTCAAAGGACTTACACAGTCTC 1772
||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1375 TATGGCAACCAGGAGCTTTACCACCGACATTACTTGCTTTCAAAGGACTCATACAGTATC 1434
Query 1773 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCGTAAAATCCCCTCAAGAGA 1832
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1435 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCATAAAATGCCCTCAAGAGA 1494
Query 1833 TTCTGAAATCTGCTTCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1892
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTCTGAAATCTGCTGCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1554
Query 1893 GTAACCCTGAGGTACGATCTCTTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTa 1952
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTAACCCTGAGGTACGATCTATTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTA 1614
Query 1953 gaaaatgcaaaatcatgaactgagactaaaaaacagattagaa 1995
||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1615 GAAAATGCAAAATCATGAACTGAGATTAAAAAACAGATTAGAA 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88864541585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5