BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58800.1 Length=1515 Score E Sequences producing significant alignments: (Bits) Value Ahg348948 jgi|Araly1|348948|fgenesh1_pg.C_scaffold_5002340 1419 0.0 > Ahg348948 jgi|Araly1|348948|fgenesh1_pg.C_scaffold_5002340 Length=1110 Score = 1419 bits (768), Expect = 0.0 Identities = 957/1045 (92%), Gaps = 26/1045 (2%) Strand=Plus/Plus Query 146 GTGATGTTGAAGCGTA-CTGACAAATGGAAATCTTCGCATGGATCTCGAATCCATCAATT 204 |||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||| Sbjct 85 GTGATGTTGAAGCGTAGC-GACAAAGGGAAATCTTCGCATGGATCTCGAATGCATCAATT 143 Query 205 CGGACTTGTTTTCGTTGTTGGGATCTTCCTGGTGGTGGTTCTGTTATTTTGTTTCAGTGG 264 ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 144 CGGACTTGTTTTCGTTGTTGGGATCTTATTGGTCGCGGTTCTGTTATTTTGTTTCAGTGG 203 Query 265 CAAGAATCAGAGCACGAAAATGCAACTACCGAAACAGATCTCTA-ACA-ATGTC-AAGCC 321 ||||||||||||||||||| || |||| | ||| || | | | ||| || || || Sbjct 204 CAAGAATCAGAGCACGAAACTGGAACT---GGAAC-GA-C-CGACACAGATCTCTAA--- 254 Query 322 CGAATTGCAATCTCAGCCAACATTAGAGATTCAGAACGAGACTCAATTGATATGGACGAT 381 | | ||| | ||||| || ||||||||||||||| ||||||||||||||||||||| Sbjct 255 C--ACTGC---C-AAGCCAGCAGTAGAGATTCAGAACGGGACTCAATTGATATGGACGAT 308 Query 382 ACCAAATTCACCAAAAGCAGTTCTGTTTATAGCTCATGGTTGCCACAGGAAAGCTTCAGA 441 |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct 309 ACCAAATTCACCAAAAGCAGTTCTGTTTATTGCTCATGGTTGCCATAGGAAAGCTTCTGA 368 Query 442 CTTTTGGGACAAATCTTCAGATTGTCCTCAATGTACTGGCCTACCAGAGGAGAGGATTCT 501 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 369 CTTTTGGGACAAATCTTCAGATTGTCCTGAATGTACTGGTCTACCAGAGGAGAGGATTCT 428 Query 502 TATGCGATTTGCCCTAGCTCGAAAGTTTGCTGTTTTAACTGTATCTAGCACTGGAACATG 561 ||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 429 TATCCGATTTGCTCTAGCTCGAAAGTTCACTGTTTTAACTGTATCTAGTGCTGGAACATG 488 Query 562 CTGGACATTTGGGAAGGAAAAAACGATTGTTGG-AAGTATAATAAAATCGTGGGTCGAGA 620 ||||||||| |||||||||||| |||||||||| ||| || ||||||||||||||||| | Sbjct 489 CTGGACATTCGGGAAGGAAAAATCGATTGTTGGAAAG-ATGATAAAATCGTGGGTCGATA 547 Query 621 AGCATAAGCTCGAAAGACTTCCGCTTGTTGCGTTAGGGGCTTCATCTGGTGGCTACTTTG 680 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 548 AGCATAAGCTCGAAAGGCTTCCGCTTGTTGGGTTAGGGGCTTCATCTGGTGGCTACTTTG 607 Query 681 TCTCGGCTCTTGCAACAGAAATGCAGTTTAGTAGCATTGTGCTTATGATTGCTGAAGGAG 740 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 608 TCTCTGCTCTTGCAACAGATATGCAGTTTAGTAGCATTGTGCTTATGATTGCCGAAGGAG 667 Query 741 TCTTTGATCAAATTAGTATCAGTAAACAGTATCCGCCTACTCTGTTT-GTGCACATGCCT 799 |||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 668 TCTTTGATAAAATTAGTATCAGTAAACAGTATCCGCCGACTCT-TTTCGTGCACATGCCT 726 Query 800 AAAGATGTGTATAGACAACAAAAGATTAGAGAGTTCTTAGAAGGTCTTAGAATGGAAGGT 859 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 727 AAAGATGTGTATAGACAACAAAAGATTAGAGAGTTTTTAGAAGGTCTCAGAATGGAAGGC 786 Query 860 ATTGATGCTGCAGAGATTGAATGCTTGGATTTGCCGATTTCTCCGGATTTCTTGGCAGAT 919 ||||||||||| || ||||||||||||||||| |||||||| || || |||||||||||| Sbjct 787 ATTGATGCTGCCGAAATTGAATGCTTGGATTTACCGATTTCCCCAGAGTTCTTGGCAGAT 846 Query 920 AGGATTCCAGGTCTT-GATTCAGATGTCTCGGCCAAACTATTTAAGTTGTTTCGAGACAA 978 ||||||||||||||| | | ||||||||| |||| || || ||||| |||| |||||| Sbjct 847 AGGATTCCAGGTCTTCG-CCCGGATGTCTCGACCAAGCTGTTCAAGTTATTTCAAGACAA 905 Query 979 GGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGACGGAGAACACCGTGGAAACA 1038 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 906 AGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGAAGGAGAACACCGTGGAAACA 965 Query 1039 AGCTCTTAGTGGCTACAAAATATCACTGGAGCAAAGTTTGATTACTCCTGTTGAGGAAGA 1098 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 966 AGCTCTCAGTGGCTACAAAATATCACTGGAACAAAGTTTGATTACTCCTGTTGAGGAAGA 1025 Query 1099 ACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATATTCAG 1158 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1026 ACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATCTTTAG 1085 Query 1159 CTGGTTTGAATCGCATATGAGCTAA 1183 ||||||||||||||||||||||||| Sbjct 1086 CTGGTTTGAATCGCATATGAGCTAA 1110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56716374805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5