BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58800.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348948 jgi|Araly1|348948|fgenesh1_pg.C_scaffold_5002340 1419 0.0
> Ahg348948 jgi|Araly1|348948|fgenesh1_pg.C_scaffold_5002340
Length=1110
Score = 1419 bits (768), Expect = 0.0
Identities = 957/1045 (92%), Gaps = 26/1045 (2%)
Strand=Plus/Plus
Query 146 GTGATGTTGAAGCGTA-CTGACAAATGGAAATCTTCGCATGGATCTCGAATCCATCAATT 204
|||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 85 GTGATGTTGAAGCGTAGC-GACAAAGGGAAATCTTCGCATGGATCTCGAATGCATCAATT 143
Query 205 CGGACTTGTTTTCGTTGTTGGGATCTTCCTGGTGGTGGTTCTGTTATTTTGTTTCAGTGG 264
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 144 CGGACTTGTTTTCGTTGTTGGGATCTTATTGGTCGCGGTTCTGTTATTTTGTTTCAGTGG 203
Query 265 CAAGAATCAGAGCACGAAAATGCAACTACCGAAACAGATCTCTA-ACA-ATGTC-AAGCC 321
||||||||||||||||||| || |||| | ||| || | | | ||| || || ||
Sbjct 204 CAAGAATCAGAGCACGAAACTGGAACT---GGAAC-GA-C-CGACACAGATCTCTAA--- 254
Query 322 CGAATTGCAATCTCAGCCAACATTAGAGATTCAGAACGAGACTCAATTGATATGGACGAT 381
| | ||| | ||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 255 C--ACTGC---C-AAGCCAGCAGTAGAGATTCAGAACGGGACTCAATTGATATGGACGAT 308
Query 382 ACCAAATTCACCAAAAGCAGTTCTGTTTATAGCTCATGGTTGCCACAGGAAAGCTTCAGA 441
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 309 ACCAAATTCACCAAAAGCAGTTCTGTTTATTGCTCATGGTTGCCATAGGAAAGCTTCTGA 368
Query 442 CTTTTGGGACAAATCTTCAGATTGTCCTCAATGTACTGGCCTACCAGAGGAGAGGATTCT 501
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 369 CTTTTGGGACAAATCTTCAGATTGTCCTGAATGTACTGGTCTACCAGAGGAGAGGATTCT 428
Query 502 TATGCGATTTGCCCTAGCTCGAAAGTTTGCTGTTTTAACTGTATCTAGCACTGGAACATG 561
||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 429 TATCCGATTTGCTCTAGCTCGAAAGTTCACTGTTTTAACTGTATCTAGTGCTGGAACATG 488
Query 562 CTGGACATTTGGGAAGGAAAAAACGATTGTTGG-AAGTATAATAAAATCGTGGGTCGAGA 620
||||||||| |||||||||||| |||||||||| ||| || ||||||||||||||||| |
Sbjct 489 CTGGACATTCGGGAAGGAAAAATCGATTGTTGGAAAG-ATGATAAAATCGTGGGTCGATA 547
Query 621 AGCATAAGCTCGAAAGACTTCCGCTTGTTGCGTTAGGGGCTTCATCTGGTGGCTACTTTG 680
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 548 AGCATAAGCTCGAAAGGCTTCCGCTTGTTGGGTTAGGGGCTTCATCTGGTGGCTACTTTG 607
Query 681 TCTCGGCTCTTGCAACAGAAATGCAGTTTAGTAGCATTGTGCTTATGATTGCTGAAGGAG 740
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 608 TCTCTGCTCTTGCAACAGATATGCAGTTTAGTAGCATTGTGCTTATGATTGCCGAAGGAG 667
Query 741 TCTTTGATCAAATTAGTATCAGTAAACAGTATCCGCCTACTCTGTTT-GTGCACATGCCT 799
|||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 668 TCTTTGATAAAATTAGTATCAGTAAACAGTATCCGCCGACTCT-TTTCGTGCACATGCCT 726
Query 800 AAAGATGTGTATAGACAACAAAAGATTAGAGAGTTCTTAGAAGGTCTTAGAATGGAAGGT 859
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 727 AAAGATGTGTATAGACAACAAAAGATTAGAGAGTTTTTAGAAGGTCTCAGAATGGAAGGC 786
Query 860 ATTGATGCTGCAGAGATTGAATGCTTGGATTTGCCGATTTCTCCGGATTTCTTGGCAGAT 919
||||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||
Sbjct 787 ATTGATGCTGCCGAAATTGAATGCTTGGATTTACCGATTTCCCCAGAGTTCTTGGCAGAT 846
Query 920 AGGATTCCAGGTCTT-GATTCAGATGTCTCGGCCAAACTATTTAAGTTGTTTCGAGACAA 978
||||||||||||||| | | ||||||||| |||| || || ||||| |||| ||||||
Sbjct 847 AGGATTCCAGGTCTTCG-CCCGGATGTCTCGACCAAGCTGTTCAAGTTATTTCAAGACAA 905
Query 979 GGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGACGGAGAACACCGTGGAAACA 1038
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 906 AGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGAAGGAGAACACCGTGGAAACA 965
Query 1039 AGCTCTTAGTGGCTACAAAATATCACTGGAGCAAAGTTTGATTACTCCTGTTGAGGAAGA 1098
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 966 AGCTCTCAGTGGCTACAAAATATCACTGGAACAAAGTTTGATTACTCCTGTTGAGGAAGA 1025
Query 1099 ACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATATTCAG 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1026 ACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATCTTTAG 1085
Query 1159 CTGGTTTGAATCGCATATGAGCTAA 1183
|||||||||||||||||||||||||
Sbjct 1086 CTGGTTTGAATCGCATATGAGCTAA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5