BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58810.1
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486339 jgi|Araly1|486339|fgenesh2_kg.5__2331__AT3G58810.2 1964 0.0
Ahg483845 jgi|Araly1|483845|fgenesh2_kg.4__2905__AT2G46800.2 235 9e-61
> Ahg486339 jgi|Araly1|486339|fgenesh2_kg.5__2331__AT3G58810.2
Length=1719
Score = 1964 bits (1063), Expect = 0.0
Identities = 1190/1251 (95%), Gaps = 10/1251 (1%)
Strand=Plus/Plus
Query 748 ATGAAAGACCATATTCATGAGCATGACCACATGGTTCAGATTTGTGGGGAAGTTTCATCA 807
||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 473 ATGGAAGACCATATTCATGAGCATGAACACATGGTTCAGATTTGTGGAGAAGTTTCATCA 532
Query 808 GGAGAAACAAGCTTGGTGGGCATCAAGAAGACATGTGGAGAAGCGCCTTGCGGATTCTCA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GGAGAAACAAGCTTGGTGGGCATCAAGAAGACATGTGGAGAAGCGCCTTGCGGATTCTCA 592
Query 868 GATGCCAAGACCAGTTCAATAGAAGCTCAAGAGCGTGCAGCATCAATGAGAAAGCTATTA 927
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 593 GATGCCAAGACCAGTTCAATAGAAGCTCAAGAACGTGCAGCATCAATGAGAAAGCTATTA 652
Query 928 ATAGCTGTTCTTCTCTGTGCCATTTTCATAGTTGTAGAAGTCGTTGGAGGAATCAAGGCC 987
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ATAGCTGTTGTTCTCTGTGCCATTTTCATAGTTGTAGAAGTCGTTGGAGGAATCAAGGCC 712
Query 988 AACAGTCTTGCGATTCTCACAGATGCAGCTCATCTGTTATCTGATGTTGCAGCCTTTGCA 1047
|| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 713 AATAGTCTCGCCATTCTCACTGATGCAGCTCATCTGTTATCTGATGTTGCAGCCTTTGCC 772
Query 1048 ATATCTTTGTTCTCGCTCTGGGCTTCGGGATGGAAGGCAAACCCTCAGCAATCTTATGGG 1107
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 773 ATATCTTTGTTCTCGCTCTGGGCTTCGGGATGGAAGGCAAATCCGCAGCAATCATATGGG 832
Query 1108 TTTTTCAGAATAGAGATTCTTGGTGCTCTTGTCTCCATTCAAATGATTTGGCTTCTTGCT 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTTTTCAGAATAGAGATTCTTGGTGCTCTTGTCTCCATTCAAATGATTTGGCTTCTTGCT 892
Query 1168 GGTATCTTGGTTTATGAAGCCATTGTTAGACTTAACAACGGTAGTGGTGAAGTGGAGGGA 1227
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 893 GGTATCTTGGTTTATGAAGCCATTGTTAGACTTAACAACGGTAGTGGCGAAGTTGAGGGA 952
Query 1228 TCTCTTATGTTTGCTGTCTCTGCAGTTGGCTTACTTGTGAACATTGCAATGGCTATTCTG 1287
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 953 TCTCTTATGTTTGCTGTCTCTGCAGTTGGCTTACTTGTCAACATTGCAATGGCTATTCTG 1012
Query 1288 TTAggtcatgaccatggtcatggt---catggtcatagtcatgacaatggtcacggtcat 1344
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 1013 TTAGGTCATGACCATGGTCATGGTGGTCATAGTCATAGTCATGACCATGGTCACGGTCAT 1072
Query 1345 agtcatgatcatggccatggAATAGCCGCAACCGAGCATCATCATGACTCTG-GTCATGA 1403
||||||||||||| ||||||||| |||||||||||||||||||||| | | | | |||||
Sbjct 1073 AGTCATGATCATGACCATGGAATTGCCGCAACCGAGCATCATCATGGC-CAGAGGCATGA 1131
Query 1404 TGAATCACAACTATCTGATGTCTTAATCGAGCAAAAGAAGCAGCGTAATGTAAATATTCA 1463
||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 TGAATCACATCTATCCGAGGTCTTAATCGAGCAAAAGAAGCAGCGGAATGTAAATATTCA 1191
Query 1464 AGGGGCTTATCTTCACGTGCTGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGGAGG 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 AGGGGCTTATCTTCACGTGCTGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGGAGG 1251
Query 1524 AGCAATCATATGGTATAAGCCGGAGTGGAAGATCCTTGATTTGATATGCACATTGGTTTT 1583
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AGCAATCATATGGTATAAACCGGAGTGGAAGATCCTTGATTTGATATGCACATTGGTTTT 1311
Query 1584 CTCTGTGATTGTGTTAGGGACAACAATTGGGATGCTTAGGAACATTCTAGAGGTTTTAAT 1643
||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||||||
Sbjct 1312 CTCTGTGATTGTGTTGGGGACGACAATTGAGATGCTCAGGAACATTCTACAGGTTTTAAT 1371
Query 1644 GGAGTCAACACCACGAGAGATTGACCCGACAATGCTTGAAAAGGGAGTGTGTGAAATTGA 1703
||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||
Sbjct 1372 GGAGTCAACACCACGAGAGATCGACGCGACAATGCTTGAAAAGGGAGTGTGTGAGATAGA 1431
Query 1704 AGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCGATTACTGTCGGCAAACTTTTGTT 1763
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1432 AGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCAATTACCGTTGGCAAACTTTTGTT 1491
Query 1764 GGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGGACAAGATTAT 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGGACAAGATTAT 1551
Query 1824 CGATTACATTAAGAGGGAACACAACATTAGTCACGTGACTATTCAGATCGAACGTCAATG 1883
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1552 TGATTACATCAAGAGGGAACACAACATAAGTCATGTGACTATTCAGATCGAACGCCAATG 1611
Query 1884 AAGCAACGTGACAAGGCGTTTTT-GCATTATCATATCTACTTTGTCTGACCATTTTGTAA 1942
|||| ||||||||| | |||||| |||||||||| ||||||||| |||||||||||| |
Sbjct 1612 AAGCGACGTGACAAAGTGTTTTTTGCATTATCAT--CTACTTTGTTTGACCATTTTGTTA 1669
Query 1943 TGTTTGTCTTGTGTACAAAAGTGtttttttttCCCAACGTATGTATCATAT 1993
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1670 TGTTTGTCTTGTGTACAAAAGTGTTTTTTC--CCCAACGTATGTATCATAT 1718
Score = 287 bits (155), Expect = 2e-76
Identities = 191/207 (92%), Gaps = 7/207 (3%)
Strand=Plus/Plus
Query 437 atatgatactatataGTTTTGAGAAAGA--GACTAGATGGGAGGCATGTATCATGACTTT 494
|||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 269 ATAT-ATAATATATAGTTTTGAGAAAGAGTGACTAGATGGGAGGCATGGATCATGACTTT 327
Query 495 CTCTATTTCTTTTTGTTCTCTCTCAGTTTTCCAATATTGCGTATAACTTTTGGTTTTGAG 554
|||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| |
Sbjct 328 CTCTATTTCTTTTTGTTCCCTCTCAATTTTCCAATATTGCGTATGACTTTTGGTTTTG-G 386
Query 555 G-TTTTATATATAAAGAGTTTGCC-AGAATGGTATGGTGACACCCAAATTACATCTCGAT 612
| ||||||||||||| || ||||| ||||||||||| | |||||||||||||||||||||
Sbjct 387 GATTTTATATATAAA-AGGTTGCCTAGAATGGTATGATTACACCCAAATTACATCTCGAT 445
Query 613 CTCTCTCTTACAAAAAAGGTATCTTAC 639
||||||||||||| |||||||||||||
Sbjct 446 CTCTCTCTTACAACAAAGGTATCTTAC 472
Score = 80.5 bits (43), Expect = 4e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 77 ATCTTTGTTTCTACTTTCTTCATTCATTCTGCAGGTAGCGAAA-GGATTTGGTAGTTAA 134
||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||
Sbjct 1 ATCTTTGTTTCTACTTTCTTCATTCATTCTGTAGGTAGC-AAACGGATTTCGTACTTAA 58
> Ahg483845 jgi|Araly1|483845|fgenesh2_kg.4__2905__AT2G46800.2
Length=1483
Score = 235 bits (127), Expect = 9e-61
Identities = 337/437 (77%), Gaps = 20/437 (5%)
Strand=Plus/Plus
Query 1462 CAAGGGGCTTATCTTCACGTGC-TGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGG 1520
||||| |||||||| || || | |||| ||||| || ||||| || || || ||||| ||
Sbjct 984 CAAGGAGCTTATCTGCATGTCCTTGGG-GATTCCATCCAGAGTGTTGGTGTTATGATTGG 1042
Query 1521 AGGAGCAATCATATGGTATAAGCCGGAGTGGAAGATCCTTGATTTGATATGCACA-TTGG 1579
|||||| ||||| ||||| || ||||| |||||||| | ||| |||| |||||| || |
Sbjct 1043 AGGAGCTATCATTTGGTACAACCCGGAATGGAAGATAGTGGATCTGATCTGCACACTT-G 1101
Query 1580 T-TTTCTCTGTGATTGTGTTAGGG-ACAACAATTGGGATGCTTAGGAACATTCTAGAGGT 1637
| ||| || || || || | ||| ||||| || ||| | | ||||||||||| ||
Sbjct 1102 TCTTT-TCGGTTATCGTCAT-GGGAACAACCATCAACATGAGTCGAAACATTCTAGAAGT 1159
Query 1638 TTTAATGGAGTCAACA-CCACGAGAGATTGAC-CCGACAATGCTTGAAAAGGGAGTGTG- 1694
|| |||||| ||| ||| ||||||||||| || |||| ||| ||||| || || ||
Sbjct 1160 ATTGATGGAGAGTACACCCA-GAGAGATTGACGCC-ACAAAGCTCGAAAA-GG-GTCTGC 1215
Query 1695 T-GAAATTGAAGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCGATTACTGTCGGCA 1753
| ||||| |||||||||||||||||||||||||||||||||||||| || || || || |
Sbjct 1216 TCGAAATGGAAGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCTATCACAGTGGGAA 1275
Query 1754 AACTTTTGTTGGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGG 1813
|| | | ||||| || ||||| || |||||||| || ||||| ||||| ||||| |
Sbjct 1276 AAGTGCTATTGGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGACATGGTGCTCA 1335
Query 1814 ACAAGATTATCGATTACATTAAG-AGGGAACACAACATTAGTCACGTGACTATTCAGATC 1872
||||| | || |||||||| | ||||| ||||||||||||| || || || || |||
Sbjct 1336 ACAAGGTAATGGATTACATCC-GCAGGGAGTACAACATTAGTCATGTTACGATACAAATC 1394
Query 1873 GAACGTCAATGAAGCAA 1889
|| ||| || ||||||
Sbjct 1395 GAGCGTTAA--AAGCAA 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76751843675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5