BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58830.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486341 jgi|Araly1|486341|fgenesh2_kg.5__2333__AT3G58830.1 1762 0.0
> Ahg486341 jgi|Araly1|486341|fgenesh2_kg.5__2333__AT3G58830.1
Length=1138
Score = 1762 bits (954), Expect = 0.0
Identities = 1093/1157 (94%), Gaps = 22/1157 (2%)
Strand=Plus/Plus
Query 1 ATCGATGGCTGCCTCCACTACTTCCTACTACCCAATCCCCAAAAGCTTCCTTCTTTCTCC 60
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATCGATGGCTGCCTCCACTAGTTTCTACTACCCAATCCCCAAAAGTTTCCTTCTTTCTCC 60
Query 61 TCCTCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCC 120
Query 121 TCCTCCTCCTTCGTCTTCTTCTTCGTCTCCTCTGCAAACGACGACAACCCATCGAAGCCA 180
| | || |||||| || | | ||||||||||||| |||||||||||| ||||
Sbjct 121 T-C-CC-CCTTCG---------TC-T-T-CTCTGCAAACGACAACAACCCATCGAGGCCA 165
Query 181 AAAGCAGAATCTGCGTCTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTTAGCTC 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 166 AAAGCAGAATCTGCGTTTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTCAGCTC 225
Query 241 TCCCACCGAAGACCCAGGATTCTCTAACCGGATCCCGGAACAATTCGACGGAGAGCCACG 300
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 226 TCCCACCGAAGACCCAGGATTTTCTAACCGGATCCCTGAACAATTCGACGGAGAGCCACG 285
Query 301 CGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAAGGGTTGGCAATTTCGTCGAACAT 360
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 286 CGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAGGGGTTGGCGATTTCGTCGAACAT 345
Query 361 GTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTC 405
Query 421 TTCGGTCTCCGTTGTTGTTAAAGATCGTCAATTTGTTCTTCCGCATGTTTCTGTGAAAGA 480
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 406 TTCGGTCTCTGTTGTTGTTAAAGATCGTCAATTGGTTCTTCCGCATGTTTCTGTGAAAGA 465
Query 481 TTTAAGATACATTGATTGGGAAGTGCTGAAGAGAAAGGGCTTCAAAGGTGTAGTGTTTGA 540
|||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 466 TTTAAGGTACATTGATTGGGGAGAGCTGAAGAGAAAGGGATTCAAAGGTGTAGTGTTTGA 525
Query 541 TAAAGATAACACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCATTACGTCCTTC 600
||| ||||| ||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 526 TAAGGATAATACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCACTCCGGCCTTC 585
Query 601 CATTGAGCGGTGTAAAGCCGTTTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGG 660
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 TATTGAGCGGTGTAAAGCCGTGTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGG 645
Query 661 GCTCACGGAATACGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAAATAGGAAT 720
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 646 GCTTACGGAATATGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAGATAGGAAT 705
Query 721 TAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCAGGAACTGCTGAAGAAGTTGAGAAACA 780
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 706 TAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCGGGAACTGCTGAAGAAGTCGAGAAACA 765
Query 781 CTTTGGTTGCACATCTTCAGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGT 840
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CTTTGGTTGCACATCTTCGGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGT 825
Query 841 TTACGGGAACAGAAACGGATTTCTAACCGTATTAACCGAGCCTTTGAGTCGAGCTGAGGA 900
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 826 TTACGGGAACAGAAACGGATTTCTAACAGTATTAACCGAGCCGTTGAGTCGAGCTGAGGA 885
Query 901 GCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAG 945
Query 961 AAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATATAACACAGTTTGTTAAAGT 1020
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 946 AAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATGTAACACAGTTTGTTAAAGA 1005
Query 1021 TCCATCAGATTTGTAAGAAGGATTCTCATTTTGCTATTGCAA-CAACAACTTTGTTCCTT 1079
|||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1006 TCCATCAGATTTGTAAGAAGGATTCTCAGTTTGCTA----AATCAACAACTTTGTTCCTT 1061
Query 1080 GttttttttttGTA-ATTG-AAATTTTGAGTTTGGGTTTTGGCCAAATGCATCATGATAA 1137
|||||||||||||| | || ||||||||| |||||||||||||||| ||||||| ||| |
Sbjct 1062 GTTTTTTTTTTGTATAATGGAAATTTTGACTTTGGGTTTTGGCCAAGTGCATCAAGATGA 1121
Query 1138 AAAATGCCATTTTTGAT 1154
||||||||||||||||
Sbjct 1122 GAAATGCCATTTTTGAT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5