BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G58850.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486344 jgi|Araly1|486344|fgenesh2_kg.5__2336__AT3G58850.1         730    0.0  


> Ahg486344 jgi|Araly1|486344|fgenesh2_kg.5__2336__AT3G58850.1
Length=552

 Score =  730 bits (395),  Expect = 0.0
 Identities = 487/529 (92%), Gaps = 15/529 (3%)
 Strand=Plus/Plus

Query  1    AACACATCTTCTCTCCCTCCGTCAATGGAGAAAACCCTAGCCACTTCCCATACCAAACGC  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AACACATCCTCTCTCCCTCCGTCAATGGAGAAAACCCTAGCCACTTCCCATACCAAACGC  60

Query  61   TCTTCTCCTCCGTCTCCATCCTCCGCCGTGAACACAAGCTCCACTGGTTTCAACCGCAGA  120
            || | | |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  61   TC-T-T-CTCCGTCTCCATCCACCGCCGTGAACACAAGCTCCACCGGTTTCAACCGCAGA  117

Query  121  ACCAGACAGAGATTGTCCGATGCAACGGCGAGTGTAAGCGAGACCGACGTAGAAGATGAA  180
            |||||||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct  118  ACCAGACAGAGACTGTCCGATACAACGGCGAGTGTAAGTGAGACTGACGTAGAAGATGAA  177

Query  181  GATGAAGATGAAGAAGGAGTGGAGGAGAAGATCGAGGCGCTTCAGACAATAGTTCCCGGA  240
            || || || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  178  GACGATGAAGAAGAAGGAGTGGATGAGAAGATCGAGGCACTTCAGACAATAGTTCCCGGA  237

Query  241  GGAACGGAACTTGGTGTCGACGCGCTGTTCGAAGAGACAGCTAGTTACATTTTGGCTCTG  300
            ||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  238  GGAACAGCACTTGGTGTCGACGCACTGTTTGAAGAGACAGCTAGTTACATTTTGGCTCTG  297

Query  301  CAATGTCAGATCAATGCCATTAAAGTTCTTACTACGTTTCTTGAGCGTTGTGAGAAAAAA  360
            ||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||| ||
Sbjct  298  CAATGTCAGATCAATGCCATTAAAGTTCTTACTGCATTTCTTGAGCGTGGTGACAAAGAA  357

Query  361  GATATGAAGTTTGGAGGTTGAAGATTGAACAAACAATTTAGAATTCTGAAAATCAGAA--  418
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct  358  GATATGAAGTTTGGAGGTTGAAGATTGAACAAACAATTT-GAATTCTGAAAATCAGAAAA  416

Query  419  -----GaaaaaaaaaaaCAATTTGGAATTCTCTCTGttttttcatttattttcaccttat  473
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  AAAAAGAAAAAAAAAAACAATTTGGAATTCTCTCTGTTTTTTCATTTATTTTCACCTTAT  476

Query  474  attttttttttttATATATTGCTGTTTAGTTCGGGTTCATAATTTAGTT  522
            ||| ||| ||||||| | | ||| |  |||||||||| || ||||||||
Sbjct  477  ATTATTTCTTTTTAT-TGTGGCT-T--AGTTCGGGTTTATGATTTAGTT  521


 Score = 62.1 bits (33),  Expect = 5e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  541  TTATGTGTTTTTATTCCAAAATATTACGAGAAA  573
            |||||||||||||||||||||||||||||||||
Sbjct  520  TTATGTGTTTTTATTCCAAAATATTACGAGAAA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5