BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58940.1
Length=2328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898853 jgi|Araly1|898853|Al_scaffold_0005_2819 1066 0.0
> Ahg898853 jgi|Araly1|898853|Al_scaffold_0005_2819
Length=1113
Score = 1066 bits (577), Expect = 0.0
Identities = 694/751 (92%), Gaps = 6/751 (1%)
Strand=Plus/Plus
Query 1364 GAAGTTAG-AGGTTAGAGGGTTTCGTGGAACAATTCGAGAGAAAGAGATGATAAGGCATT 1422
|||||| | ||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 366 GAAGTT-GCAGGTTAGTGGGTTTCGAGGAACAATTAGAGAGAAAGAGATGATAAGGCATT 424
Query 1423 TCTTGGAGTATTTCCCGTGTTTGGATGAGATGGAGATAGATGCCGAAGAGAATGATTCTA 1482
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 425 TCTTGGAGTATTTCCCGTGTGTGGATGAGATGGAGATAGATGCCGAAGAGGATGATTCTA 484
Query 1483 CAAACTTTGAAGTGCCTAGAATTTTAAAAGTTGTCGCGTATAGGCTCCACGATGTGGTCT 1542
||||||||||||||||||||||||||||| |||| || |||| ||||||||| |||||||
Sbjct 485 CAAACTTTGAAGTGCCTAGAATTTTAAAAATTGTTGCCTATAAGCTCCACGACGTGGTCT 544
Query 1543 CGACAGAGATAGTTGGACATTGGCAGAGTTCGGCACAATCTGGGGGTTGGTCCCAGACCC 1602
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 545 CGACAGAGATAGTTGGACATTGGAAGAGTTCGGCACAATCTGGGGGTTGGTCCCAGACCC 604
Query 1603 AGATGGATGAGATGTACTATGAGTTGGCTCCCCGCAATAAAGAGCGTATCTACGATATGT 1662
|||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 605 AGATGGATGAGATGTACTCTGAGTTCGCTCCCCGCAATAAAGAGCGTATCTATGATATGG 664
Query 1663 TCTTCTTCATGCGTAGAGCTTCTTCCACGGTACCTCCTCCTCCGCCACAAGAGATGTCTC 1722
||||| | |||||||||||||||||| | || |||||||||| |||||||||||||||||
Sbjct 665 TCTTCATGATGCGTAGAGCTTCTTCCCCAGTTCCTCCTCCTCTGCCACAAGAGATGTCTC 724
Query 1723 AAGACTACCTTCAGATGCAACTTGAAGTTGCGGATCTTAAGGAGAGGCAACGAGACCAGG 1782
| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | |
Sbjct 725 AGGACTACCTTCAGATGCAACTTGAAGCTGCGGATCTTAAGGAGAGGCTACGGGACAAAG 784
Query 1783 AAGC-CAAGCTTGCGGATCTTAAGGAGAGGCTACGGGCTATGTTAGATATGATTGTTGAC 1841
|||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 785 AAGCTCA-GCTTGCGGATCTTAAGGAGAGGCTACGGGCTATGTTCGATATGATTGTCGAC 843
Query 1842 CAGAACCCAATTATAGCCTCAGCGTTGAGGGCTAGAGAGGCAACTAACTCAGAGCGAGAA 1901
||||||||||| ||||| |||||||||| |||| ||||||||||| |||||||||||| |
Sbjct 844 CAGAACCCAATGATAGCATCAGCGTTGATGGCTCGAGAGGCAACTGACTCAGAGCGAGCA 903
Query 1902 AAGGCGTCGAGTGGTCAGGAGATGACCGAGAAGGAGCGGGACTATGATGCTCTGTTCGAT 1961
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct 904 AAGGCGTCGAGTGGTGAGGAGATGACCGAGAATAAGCGGGACTATGATGCTCTGTTAGAT 963
Query 1962 ATCATTG-TCGAGCAGAACCCAATGCTAGCATCGGCAGTTAGAGCTCTGCGTGCAACCGA 2020
||||||| | ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 964 ATCATTGCT-GAGCAGAACCCAATGCTAGCATCGGCACTAAGGGCTCTGCGTGCAACCGA 1022
Query 2021 CTCAGAGCGTGCTGAGACATCCAGTAATCAGGAGATGACCGAGCTCGGCCAAGCTACGGC 2080
| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1023 CACAGAGCGAGCTGAGACATCCAGGGATCAGGAGATGACCGAGCTCGGCCAAGCTACGGC 1082
Query 2081 AACATATTTTCCCCCACGAGAAGGAGAATAG 2111
| || |||||| |||||||| |||||||||
Sbjct 1083 AGCAGATTTTCTGCCACGAGATGGAGAATAG 1113
Score = 67.6 bits (36), Expect = 4e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1026 GATGATGAGGGTGATGTTGTTCTCCAATTTTGCAATGTG 1064
|||||||||||||||||||||||||||||| ||||||||
Sbjct 328 GATGATGAGGGTGATGTTGTTCTCCAATTTGGCAATGTG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87683743990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5