BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58960.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898856 jgi|Araly1|898856|Al_scaffold_0005_2822 1212 0.0
> Ahg898856 jgi|Araly1|898856|Al_scaffold_0005_2822
Length=1287
Score = 1212 bits (656), Expect = 0.0
Identities = 839/926 (91%), Gaps = 17/926 (2%)
Strand=Plus/Plus
Query 1 ATGGATAGAATCAGCAGTCTATCAAATGATATCATTA-GTAACATCGTAT-CTTTCCTTT 58
|||||||| ||||||| |||||| ||||| |||| || || |||| |||| |||| ||||
Sbjct 1 ATGGATAGGATCAGCAATCTATCGAATGAAATCA-TATGTCACATTGTATCCTTT-CTTT 58
Query 59 CGGCAAAAGACGCTG-CTGTCGCATCGGTTCTCTCAAAGAGGTGGCAAAATATCTATACC 117
||||||| || || | ||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 59 CGGCAAAGGAGGC-GACTGTCGCATCGGTTCTCTCAAAGAGATGGCAAAATCTCTATACC 117
Query 118 ATCGTACCAAATCTTGAGTTTGATAACACACTTGAGAATCAAGGAAGTTTGACGGATTTC 177
||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 118 ATCATACCAAACCTTGAGTTTGATAACACACTTGAGAATCAAGGTAGTTTGAAGGATTTC 177
Query 178 TTGAATGGTTTGCTGGCTCTTCCGGCCAGTACCCGCATAAAGAATGTCTCTATAAAACGT 237
|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 178 TTGAATGGATTGCTGGCTCTTCCGGCCAGTTCCCGCATAAAGAACGTCTCTATAAAATGT 237
Query 238 CGCGGGCGTGATGGACCAAATCGTGATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTG 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 CGCGGGCGTGATGGACCAAATCGTCATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTG 297
Query 298 AAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCGACGGAAGATATTCA 357
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 298 AAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCAACGGAGGATATTCA 357
Query 358 CTACCTGTTGAAGTCTTCACTTGCAAGACGCTTGTTGAGCTTGAACTTGGGTCTATTTTA 417
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 358 CTACCTGTTGAAATCTTCACTTGCAAGACTCTTGTTGAGCTTGAACTAGGGTCTATTTTG 417
Query 418 CAAATTGATCTTGTTCCTGAGAATGCTCTTCTTCCGGCGCTTAAGACTCTCATTATTGAT 477
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 418 CAAATTGATCTTGTCCCTGAGAATGCTCTTCTTCCAGCGCTTAAGACTCTCACTATTGAT 477
Query 478 GCAGTTCAATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTCTGTCTTCTTGCCCT 537
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 478 TCAGTTCGATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTATTTCTTCTTGCCCT 537
Query 538 GTGCTTGTAGAGTTAAGGATGCTTAATGTGCAATGGGAGCATTGGCAATGGTCTCGCAGA 597
|||||||| |||||| |||| ||||||||| | |||||||| ||| |||||||| |||||
Sbjct 538 GTGCTTGTGGAGTTAGGGATTCTTAATGTGGAGTGGGAGCAGTGGGAATGGTCTTGCAGA 597
Query 598 GTGTCTAGTCCAACCCTAGAGAAACTTACTATGAACCACAGATATCACTTTG-------- 649
||||||||||| ||||| |||| ||||||||| |||||||||||| ||||||
Sbjct 598 GTGTCTAGTCCGACCCTGGAGAGACTTACTATCAACCACAGATATTACTTTGCTTATATT 657
Query 650 G-TAATACTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTAACCAGCTTA 708
| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 658 GGTAATATTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTTACCAACTTG 717
Query 709 AAGTACTATGATCTTCCTCCGAAATCATATCCGACGGTTAATCTCGACTCCCTTGTTGAA 768
|||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||| |||
Sbjct 718 AAGTACTATGATTTTGCTCCGCAATCCTATCCGATGGTTAATCTCGACTCCCTTGTCGAA 777
Query 769 GCTACAATCTCTCTTACGTTGCCACTACATCACGCCTGGACCG-GAAAACATGCACGTCG 827
||||| || ||||| |||||||||||||||||||||||| | || || |||||||||
Sbjct 778 GCTACTGTCGGTCTTAAGTTGCCACTACATCACGCCTGGAC-GAGAGAATATGCACGTCA 836
Query 828 TGGTGATACTGTTCCAAGCGTAACCAATCTGATCAAAGGGTTAAGAAACGTTGAGACCTT 887
|||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 837 TGGTGATACTATTCCAAGCGTAACTAATCTGATCAAGGGGTTAAGAAATGTTGAGACCTT 896
Query 888 GAACTTATCAAGTACTGATACTGTGG 913
||||||| || |||| ||||||||||
Sbjct 897 GAACTTAACATGTACCGATACTGTGG 922
Score = 468 bits (253), Expect = 6e-131
Identities = 336/374 (90%), Gaps = 13/374 (3%)
Strand=Plus/Plus
Query 1057 GGTCCCTTGCACTACAATTATCAGTTGGGCGATGGTTATGAGTCTGAGGAGATTTATTCT 1116
|||||||||||||| ||||||||||||||||||| ||||||||||| ||| |
Sbjct 925 GGTCCCTTGCACTATAATTATCAGTTGGGCGATGAATATGAGTCTGATGAG-------GT 977
Query 1117 GAAGATGATGATGAGGAGGAATCGGAGTCTGACGATGATGAGCCTATTTGTGAGTGCTTG 1176
||| | || ||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 978 GAA-CT-ATTATGAGGATGAGTCGGAGTCTGACGATGATGAATCTATTTGTGAGTGCTTG 1035
Query 1177 TCAGATTATTCTTTCCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAAGCGAGTACAGC 1236
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1036 TCAGAGTATTCTTTTCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAACCGAGTACAGC 1095
Query 1237 GGAACTAAAATAGAGTT-GAAGCACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGA 1295
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GGAACTAAAAAAGAGTTGGAA-CACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGA 1154
Query 1296 GCTTGTCAAAGTTTTTTCTCATGAAAGAGATGAAGAGGAACATG-TTCAACTCAGAACCA 1354
|||||||||||||| | || |||||| ||| || |||||||| | |||||||||||||||
Sbjct 1155 GCTTGTCAAAGTTTGTGCTAATGAAACAGACGACGAGGAACA-GATTCAACTCAGAACCA 1213
Query 1355 ATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGACCCAGTTCGAGTTTATTCCTCCTC 1414
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1214 ATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGATCGAGTTCGAGTTTATTCCTCCTC 1273
Query 1415 GTAGCTCTGTTTGA 1428
|||||| | |||||
Sbjct 1274 GTAGCTTTCTTTGA 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5