BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58960.1 Length=1428 Score E Sequences producing significant alignments: (Bits) Value Ahg898856 jgi|Araly1|898856|Al_scaffold_0005_2822 1212 0.0 > Ahg898856 jgi|Araly1|898856|Al_scaffold_0005_2822 Length=1287 Score = 1212 bits (656), Expect = 0.0 Identities = 839/926 (91%), Gaps = 17/926 (2%) Strand=Plus/Plus Query 1 ATGGATAGAATCAGCAGTCTATCAAATGATATCATTA-GTAACATCGTAT-CTTTCCTTT 58 |||||||| ||||||| |||||| ||||| |||| || || |||| |||| |||| |||| Sbjct 1 ATGGATAGGATCAGCAATCTATCGAATGAAATCA-TATGTCACATTGTATCCTTT-CTTT 58 Query 59 CGGCAAAAGACGCTG-CTGTCGCATCGGTTCTCTCAAAGAGGTGGCAAAATATCTATACC 117 ||||||| || || | ||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 59 CGGCAAAGGAGGC-GACTGTCGCATCGGTTCTCTCAAAGAGATGGCAAAATCTCTATACC 117 Query 118 ATCGTACCAAATCTTGAGTTTGATAACACACTTGAGAATCAAGGAAGTTTGACGGATTTC 177 ||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 118 ATCATACCAAACCTTGAGTTTGATAACACACTTGAGAATCAAGGTAGTTTGAAGGATTTC 177 Query 178 TTGAATGGTTTGCTGGCTCTTCCGGCCAGTACCCGCATAAAGAATGTCTCTATAAAACGT 237 |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| || Sbjct 178 TTGAATGGATTGCTGGCTCTTCCGGCCAGTTCCCGCATAAAGAACGTCTCTATAAAATGT 237 Query 238 CGCGGGCGTGATGGACCAAATCGTGATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTG 297 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 238 CGCGGGCGTGATGGACCAAATCGTCATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTG 297 Query 298 AAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCGACGGAAGATATTCA 357 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 298 AAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCAACGGAGGATATTCA 357 Query 358 CTACCTGTTGAAGTCTTCACTTGCAAGACGCTTGTTGAGCTTGAACTTGGGTCTATTTTA 417 |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 358 CTACCTGTTGAAATCTTCACTTGCAAGACTCTTGTTGAGCTTGAACTAGGGTCTATTTTG 417 Query 418 CAAATTGATCTTGTTCCTGAGAATGCTCTTCTTCCGGCGCTTAAGACTCTCATTATTGAT 477 |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 418 CAAATTGATCTTGTCCCTGAGAATGCTCTTCTTCCAGCGCTTAAGACTCTCACTATTGAT 477 Query 478 GCAGTTCAATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTCTGTCTTCTTGCCCT 537 |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 478 TCAGTTCGATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTATTTCTTCTTGCCCT 537 Query 538 GTGCTTGTAGAGTTAAGGATGCTTAATGTGCAATGGGAGCATTGGCAATGGTCTCGCAGA 597 |||||||| |||||| |||| ||||||||| | |||||||| ||| |||||||| ||||| Sbjct 538 GTGCTTGTGGAGTTAGGGATTCTTAATGTGGAGTGGGAGCAGTGGGAATGGTCTTGCAGA 597 Query 598 GTGTCTAGTCCAACCCTAGAGAAACTTACTATGAACCACAGATATCACTTTG-------- 649 ||||||||||| ||||| |||| ||||||||| |||||||||||| |||||| Sbjct 598 GTGTCTAGTCCGACCCTGGAGAGACTTACTATCAACCACAGATATTACTTTGCTTATATT 657 Query 650 G-TAATACTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTAACCAGCTTA 708 | ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 658 GGTAATATTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTTACCAACTTG 717 Query 709 AAGTACTATGATCTTCCTCCGAAATCATATCCGACGGTTAATCTCGACTCCCTTGTTGAA 768 |||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||| ||| Sbjct 718 AAGTACTATGATTTTGCTCCGCAATCCTATCCGATGGTTAATCTCGACTCCCTTGTCGAA 777 Query 769 GCTACAATCTCTCTTACGTTGCCACTACATCACGCCTGGACCG-GAAAACATGCACGTCG 827 ||||| || ||||| |||||||||||||||||||||||| | || || ||||||||| Sbjct 778 GCTACTGTCGGTCTTAAGTTGCCACTACATCACGCCTGGAC-GAGAGAATATGCACGTCA 836 Query 828 TGGTGATACTGTTCCAAGCGTAACCAATCTGATCAAAGGGTTAAGAAACGTTGAGACCTT 887 |||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 837 TGGTGATACTATTCCAAGCGTAACTAATCTGATCAAGGGGTTAAGAAATGTTGAGACCTT 896 Query 888 GAACTTATCAAGTACTGATACTGTGG 913 ||||||| || |||| |||||||||| Sbjct 897 GAACTTAACATGTACCGATACTGTGG 922 Score = 468 bits (253), Expect = 6e-131 Identities = 336/374 (90%), Gaps = 13/374 (3%) Strand=Plus/Plus Query 1057 GGTCCCTTGCACTACAATTATCAGTTGGGCGATGGTTATGAGTCTGAGGAGATTTATTCT 1116 |||||||||||||| ||||||||||||||||||| ||||||||||| ||| | Sbjct 925 GGTCCCTTGCACTATAATTATCAGTTGGGCGATGAATATGAGTCTGATGAG-------GT 977 Query 1117 GAAGATGATGATGAGGAGGAATCGGAGTCTGACGATGATGAGCCTATTTGTGAGTGCTTG 1176 ||| | || ||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 978 GAA-CT-ATTATGAGGATGAGTCGGAGTCTGACGATGATGAATCTATTTGTGAGTGCTTG 1035 Query 1177 TCAGATTATTCTTTCCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAAGCGAGTACAGC 1236 ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1036 TCAGAGTATTCTTTTCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAACCGAGTACAGC 1095 Query 1237 GGAACTAAAATAGAGTT-GAAGCACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGA 1295 |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1096 GGAACTAAAAAAGAGTTGGAA-CACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGA 1154 Query 1296 GCTTGTCAAAGTTTTTTCTCATGAAAGAGATGAAGAGGAACATG-TTCAACTCAGAACCA 1354 |||||||||||||| | || |||||| ||| || |||||||| | ||||||||||||||| Sbjct 1155 GCTTGTCAAAGTTTGTGCTAATGAAACAGACGACGAGGAACA-GATTCAACTCAGAACCA 1213 Query 1355 ATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGACCCAGTTCGAGTTTATTCCTCCTC 1414 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1214 ATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGATCGAGTTCGAGTTTATTCCTCCTC 1273 Query 1415 GTAGCTCTGTTTGA 1428 |||||| | ||||| Sbjct 1274 GTAGCTTTCTTTGA 1287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53402523490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5