BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58970.1
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938899 jgi|Araly1|938899|scaffold_503090.1 2161 0.0
> Ahg938899 jgi|Araly1|938899|scaffold_503090.1
Length=1352
Score = 2161 bits (1170), Expect = 0.0
Identities = 1291/1350 (96%), Gaps = 6/1350 (0%)
Strand=Plus/Plus
Query 180 TTTCGTGGCTGGAATCCATGGGGAAGGGCCCCTTATCGTTTCGCCGTCTTTCAAGCATCC 239
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 5 TTTCGTGGCTGGAATCGATGGGGAAGGGCCCCTTATCGTTTCGCCGTCTTTCGAGCATCC 64
Query 240 GTCACCGGAAAAAAGGTTCTGCGGTGAAGGATGACTCCGCACAGACATCGACGCCTTCAT 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 65 GTCACCGGAAAAAAGGTTCTGCCGTGAAGGATGACTCCGCACAGACATCGACGCCTTCAT 124
Query 300 CTCCACCGCCTCCCCTACCGATTCATGCTGGCGGATCGGCTGTGGGAGCGACGGGGAAGG 359
|||||||| |||||||||||||| ||||||||||| || ||| |||| |||||||||||
Sbjct 125 CTCCACCGTCTCCCCTACCGATTAATGCTGGCGGACCGATTGTAGGAGGGACGGGGAAGG 184
Query 360 CGAAGAAGAAAACCGGAGGAGCTAGGCTGTGGATGAGGTTTGATCGGACTGGTGCTATGG 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 185 CGAAGAAGAAAACCGGTGGAGCTAGGCTGTGGATGAGGTTTGATCGGACTGGTGCGATGG 244
Query 420 AAGTGGTGGAGTGCGATAAGAGTACAATCATCAAACGTGCTTCTGTTCCCGCTAGGGATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AAGTGGTGGAGTGCGATAAGAGTACAATCATCAAACGTGCTTCTGTTCCCGCTAGGGATT 304
Query 480 TGAGGATACTTGGCCCTGTCTTCTCTCACTCCTCTAACATTCTCGCCAGAGAGAAAGCTA 539
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 305 TGAGGATTCTTGGCCCTGTCTTCTCTCACTCTTCTAACATTCTCGCCAGAGAGAAAGCTA 364
Query 540 TTGTTGTGAATTTAGAGGTCATAAAGGCAATAGTTACTGCAGAAGAAGTGTTG-TTGTTG 598
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 365 TTGTTGTGAATTTAGAGGTCATAAAGGCAATAGTTACTGCAGAAGAAGTGCTGCTT-TTG 423
Query 599 GATCCTCTCCGTCCTGAAGTTCTTCCATTCGTTGAACGACTAAAGCAACAGTTTCCTCAG 658
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 424 GATCCTCTCCGTCCTGATGTTCTTCCTTTCGTTGAACGACTAAAGCAACAGTTTCCTCAG 483
Query 659 AGGAATGGGAATGAAAATGCACTGCAAGCTTCTGCGAATGTACAATCTCCTCTTGATCCA 718
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 484 AGGAATGGGACTGAAACTGCACTGCAAGCTTCTGCAAATGTACAATCTCCTCTTGATCCA 543
Query 719 GAAGCTGCAGAGGGTTTGCAGAGTGAGCTTCCTTTTGAGTTTCAGGTCCTGGAGATTGCA 778
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 544 GAAGCTGCAGAGGGTTTGCAGAGTGAGCTTCCTTTTGAATTTCAGGTCCTGGAGATTGCA 603
Query 779 CTTGAGGTCGTCTGCTCATTTGTTGATAAAAGTGTGGCTGCTCTTGAGACAGAAGCTTGG 838
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 604 CTTGAGGTCGTCTGTTCATTTGTTGATAAAAGTGTTGCTGCTCTTGAGACAGAATCTTGG 663
Query 839 CCTGTCCTTGATGAACTCACTAAGAATGTCAGCACTGAGAATCTTGAATATGTACGAAGT 898
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 664 CCTGTCCTTGATGAACTAACCAAGAATGTCAGCACTGAGAATCTTGAATATGTACGAAGT 723
Query 899 TTGAAAAGTAATCTCACCCGCTTGCTAGCTCGTGTACAAAAGGTGAGAGATGAACTCGAG 958
|||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||
Sbjct 724 TTGAAAAGTAATCTCACCCGCTTGTTAGCCCGTGTGCAGAAGGTGAGAGATGAACTCGAA 783
Query 959 CATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAG 1018
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 784 CATTTGTTAGATGACAACGAAGACATGGCAGACTTATACTTAACAAGGAAATGGATCCAG 843
Query 1019 AACCAGCAAACCGAGGCAATACTGGCGGGTACAGCATCAAACAGCATTGCC-CTCCCAGC 1077
||||||||||||||||||||||| ||||| ||||||||||||||||||| | | ||||||
Sbjct 844 AACCAGCAAACCGAGGCAATACTTGCGGGGACAGCATCAAACAGCATTGTCGC-CCCAGC 902
Query 1078 ACATAATACATCAAATCTTCACCGGCTCACATCAAACAGAAGTGCGAGTATGGTGACGAG 1137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 903 ACATAATACATCAAATCTTCACCGGCTCACATCAAACAGAAGCGCGAGTATGGTGACGAG 962
Query 1138 CAATACAGAGGAAGATGACGTGGAGGATTTGGAGATGTTGTTGGAGGCATACTTCATGCA 1197
|||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 963 CAATACAGAGGAAGATGACGTGGAAGATCTGGAGATGTTGCTGGAGGCATACTTCATGCA 1022
Query 1198 ACTGGATGGAATGCGGAACAAGATTCTTACAGTGAGGGAGTACATTGACGACACAGAAGA 1257
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACTGGAGGGAATGCGGAACAAGATTCTTACAGTGAGGGAGTACATTGACGACACAGAAGA 1082
Query 1258 CTACGTGAACATTCAACTGGATAATCAACGAAACGAACTGATCCAGCTGCAGCTGACGCT 1317
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CTACGTGAACATACTACTGGACAATCAACGAAACGAACTGATCCAGCTGCAGCTGACGCT 1142
Query 1318 GACCATAGCCTCGTTTGCAATAGCCGCAGAGACATTGTTGGCCAGCTTGTTTGGAATGAA 1377
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1143 GACCATAGCATCGTTTGCAATAGCCGCAGAGACTTTGTTGGCCAGCTTGTTCGGAATGAA 1202
Query 1378 CATACCATGTCCATTGTATAGCATACATGGCGTCTTTGGTTACTTTGTGTGGAGTGTTAC 1437
|||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct 1203 CATACCATGTCCATTGTATAACACACACGGCATCTTTGGTTACTTTGTGTGGAGTGTTAC 1262
Query 1438 TGCACTTTGCATTGTGCTTTTCATGGTCACTCTTGGTTACGCCAGGTGGAAGAAGCTGCT 1497
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 TGCACTTTGCATTGTGCTTTTCATGGTCACCCTTGGTTACGCCAGGTGGAAGAAGCTGCT 1322
Query 1498 AGGCTCATAATCTCC--CTCTCTCTTACAA 1525
||||||||| |||| |||||||||||||
Sbjct 1323 AGGCTCATAGTCTCTTTCTCTCTCTTACAA 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5