BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G58980.1

Length=1785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949394 jgi|Araly1|949394|scaffold_801281.1                        143    5e-33


> Ahg949394 jgi|Araly1|949394|scaffold_801281.1
Length=331

 Score =  143 bits (77),  Expect = 5e-33
 Identities = 106/120 (88%), Gaps = 2/120 (2%)
 Strand=Plus/Plus

Query  1    ATGGATAGGATTAGCAATCTACCAAATGAGATCATTTGTCACATTGTATCTTTCCTTTCG  60
            |||||||| || |||||||||||| ||||||||||||||||||||||||||||  |||||
Sbjct  21   ATGGATAGAATCAGCAATCTACCAGATGAGATCATTTGTCACATTGTATCTTTTATTTCG  80

Query  61   GCAAAGGAAGCTGCTTTC-GCATCGATTCTGTCAAAGAGGTGGCGGAATCTCTTTACCAT  119
            |||||||||||||||| | |||| | |||| ||||||| ||||| ||| || ||||||||
Sbjct  81   GCAAAGGAAGCTGCTT-CAGCATTGGTTCTCTCAAAGAAGTGGCAGAACCTGTTTACCAT  139



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67000740955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5