BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58990.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938903 jgi|Araly1|938903|scaffold_503094.1 1146 0.0
> Ahg938903 jgi|Araly1|938903|scaffold_503094.1
Length=802
Score = 1146 bits (620), Expect = 0.0
Identities = 732/783 (93%), Gaps = 19/783 (2%)
Strand=Plus/Plus
Query 1 TTAAGAAGTAGCAGAACAATGGCGACTTCTCAGCAATTTTTAAACCCTACACTCTTCAAA 60
||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 3 TTACGAAGTAGCAAAACAATGGCGATTTCTCAGCAATTTCTAAACCCTACACTCTTCAAA 62
Query 61 TCCTTAGCTTCCTCAAACAAAAACTCATGTACTCTCTGCCCATCTCCTTTCTTGCAACTC 120
|||||||||||||||||| |||| | | || | || ||||||||||| | ||||
Sbjct 63 TCCTTAGCTTCCTCAAAC-AAAA---A-G-----TC-G-CCTTCTCCTTTCTTTCGACTC 110
Query 121 AAGTCCGCCTCCACAATTTTCAATTACAAACCACTTACTTCCTCCT-C-C-GCCACGATC 177
|||||| ||||||||| |||||||| |||||||||||||||||||| | | ||||| |||
Sbjct 111 AAGTCCACCTCCACAACTTTCAATTTCAAACCACTTACTTCCTCCTCCTCTGCCACAATC 170
Query 178 ATCACACGCGTCGCTGCATCATCCTCCGATTCAGGCGAGTCAATAA-CCAGAGAGACTTT 236
|||||||||| ||| | ||||||||| |||||||||||||||| || ||||||| |||||
Sbjct 171 ATCACACGCGCCGCCGTATCATCCTCTGATTCAGGCGAGTCAA-AATCCAGAGAAACTTT 229
Query 237 CCACGGCCTCTGCTTCGTCTTGAAAGACAACATCGACACCGATCAAATAATCCCCGCCGA 296
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 230 CCACGGCCTCTGCTTTGTCTTGAAAGACAACATCGACACCGATCAAATCATCCCCGCCGA 289
Query 297 GTACGGCACTCTCATCCCTTCGATTCCAGAAGATCGCGAGAAA-CTCGGCTCTTTCGCGC 355
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 290 GTACGGCACTCTCATCCCTTCGATTCCAGAAGATCGCGA-AAAGCTCGGCTCCTTCGCGC 348
Query 356 TTAACGGCTTACCAAAATTCTACAACGAACGTTTCGTTGTTCCAGGAGAGATGAAATCAA 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 349 TTAACGGCTTACCAAAATTCTACAATGAACGTTTCGTTGTTCCAGGAGAGATGAAATCAA 408
Query 416 AGTACTCAGTCATCATCGGCGGCGATAATTTCGGTTGCGGATCTTCCCGCGAACACGCTC 475
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGTACTCCGTCATCATCGGCGGCGATAATTTCGGTTGCGGATCTTCCCGCGAACACGCTC 468
Query 476 CAGTTTGTCTCGGCGCGGCGGGAGCTAAAGCTGTGGTGGCGGAATCGTACGCTAGGATCT 535
| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 469 CGGTTTGCCTCGGCGCGGCTGGAGCTAAAGCCGTGGTGGCGGAATCGTACGCTAGGATCT 528
Query 536 TTTTCAGGAACTGTGTAGCTACAGGTGAGATTTTCCCGTTGGAATCGGAGGTTAGGATTT 595
| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 529 TCTTCAGGAACTGTGTAGCTACAGGTGAGATCTTCCCGCTCGAATCGGAGGTTAGGATTT 588
Query 596 GCGACGAGTGCAAAACAGGGGATGTGGTGACAATCGAACACAAGGAAGACGGTAGTAGTT 655
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 589 GCGACGAGTGCAAAACAGGGGATGTGGTGACCATCGAACACAAGGAAGACGGTAGTAGTT 648
Query 656 TGCTGATCAATCATACGACGAGGAAAGAATACAAACTGAAACCGCTCGGTGATGCCGGTC 715
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 649 TGCTGATCAATCATACGACGAGGAAAGAATACAAACTTAAACCGCTAGGTGATGCCGGTC 708
Query 716 CGGTGATCGACGCCGGTGGAATCTTCGCTTATGCAAGAAAAGCCGGCATGATTCCTTCTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CGGTGATCGACGCCGGTGGAATCTTCGCTTATGCAAGAAAAGCCGGCATGATTCCTTCTG 768
Query 776 CTT 778
|||
Sbjct 769 CTT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5