BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59000.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898862 jgi|Araly1|898862|Al_scaffold_0005_2828 800 0.0
> Ahg898862 jgi|Araly1|898862|Al_scaffold_0005_2828
Length=792
Score = 800 bits (433), Expect = 0.0
Identities = 525/570 (92%), Gaps = 4/570 (1%)
Strand=Plus/Plus
Query 483 ATGGAAGATAGCTATCGGCTGTCTCCAAAAGGTTTCGCCAGCAAGACACTAGTTAAGCTG 542
|||||||||| |||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 1 ATGGAAGATAACTATCGGCTGTCGCCAAAAGGTTTCGAGAGCAGGACACTAGTTAAGCTG 60
Query 543 GAAATAGGTTGTGGAATTGATATTAGTTGGGTAGCTGGGAGCATTTTCTTACCAATGCTT 602
|||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 61 AAAATAGACTGTGGAATTGATGTTAGTTGGATGGCTGGGAGCATTTTCTTACCAATGCTT 120
Query 603 AAGACTCTCGTTCTTGACTCTGTTTGGTTTTATGTTGATAAGTTTGAGACTCTACTTCTT 662
|| ||||| ||||||||||| |||| ||||||||||||||||||||||| ||| |||| |
Sbjct 121 AAAACTCTAGTTCTTGACTCAGTTTCGTTTTATGTTGATAAGTTTGAGATTCTTCTTCAT 180
Query 663 GCTTTGCCTGCGCTTGAGGAATTAGTCCTGGTTGATGTAAACTGGTTAGATTCGGATGTC 722
||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||
Sbjct 181 GCTTTGCCTGCGCTTGATGATTTAGTCCTGGTTGATGTTAACTGGTTAGATTCGAATGTC 240
Query 723 ACCATCTCAAATGCAAGCCTCAAGACCCTAACAATAGATTCCGACGGTCATTTAGGCACT 782
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 241 ACCATCTCAAATGCAAGCCTCAAGACCCTAACAATAGACCCCGATGGTCATTTAGGCACT 300
Query 783 TTTTCATTTGATACACCTAGTCTTGTTTATTTCTGTTACTCTGATTATGCTGCGGAAGAC 842
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTTTCATTTGATACACCTAGTCTTGTTTATTTCTTTTACTCTGATTATGCTGCGGAAGAC 360
Query 843 TATCCCGTAGTTAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTTTGGTTACTGAT 902
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 361 TATCCCGTAGTTAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTATGGTTAGTGAT 420
Query 903 -AATGAAATAGAGCGAGTAAGACTACCAATTAATGATG-GATTAGAGGATGCTATGGACA 960
|| || || |||||||| ||| | |||| ||||||| | || ||||||| ||||||||
Sbjct 421 GAA-GAGATTGAGCGAGTGAGAGTGCCAAATAATGATTTG-TTCGAGGATGATATGGACA 478
Query 961 ATGTTGTTCTCAGATTTGGACATGTGGGGAAGCTCATGAATGGCATACGAAATGTTGAGT 1020
||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 ATGTTGTTCTCCGATTTGAACATGTGGGGAAGCTTATGAATGGCATACGAAATGTTGAGT 538
Query 1021 ATCTGGAGTTGTCTGCTGATACTCTCGAGG 1050
||||||| ||||||||||||||||||||||
Sbjct 539 ATCTGGACTTGTCTGCTGATACTCTCGAGG 568
Score = 204 bits (110), Expect = 2e-51
Identities = 120/125 (96%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1369 AGGAGATGGACATATATGCTGACGAGGATGGTCCTACAAACCTCGAAGCTCCTGGGATGT 1428
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGGAGATGGAGATATATGCTGACGAGGATGGTCCTACAAACCTCGAAGCTCCTGGGATGT 625
Query 1429 TTGAACAAATTACGCAACTTTTTACACTCTACGACGAGTTTTATACTTGTGATGTCCAGT 1488
||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 626 TTGAACAAATTGCGCATCTTTTTACACTCTACGACCAGGTTTATACTTGTGATGTCCAGT 685
Query 1489 TTATG 1493
|||||
Sbjct 686 TTATG 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5