BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59010.1
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938912 jgi|Araly1|938912|scaffold_503103.1 2519 0.0
Ahg483407 jgi|Araly1|483407|fgenesh2_kg.4__2467__AT2G43050.1 558 4e-158
> Ahg938912 jgi|Araly1|938912|scaffold_503103.1
Length=1618
Score = 2519 bits (1364), Expect = 0.0
Identities = 1537/1620 (95%), Gaps = 14/1620 (1%)
Strand=Plus/Plus
Query 97 AAAGTTGCACATATATCACAATGGCAACTACATCATTCTCATTACCAAATCATAAGTTCG 156
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAGTTGTACATATATCACAATGGCAACTACATCATTCTCATTACCAAATCATAAGCTCC 60
Query 157 GGATCAAACTAATGTTGTTCCTAGTCTTGAACCTCTTGTCCCTTCAGACTTCAGTATTTG 216
||||||||||||||||||||||||||||||| | | | | || | |||||||||
Sbjct 61 GGATCAAACTAATGTTGTTCCTAGTCTTGAA-C-C---T--C-TC-G---TCAGTATTTT 108
Query 217 CCCATTCATCAAACTCTAAATTCACAAAAATCTCAAGACACCCAAACTCCGATTCATCTT 276
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 109 CCCATTCATCAAACTCTAAATTCACAAAATTCTCAAGAAACCCAAACTCCGATTCATCTT 168
Query 277 CGAGAACCAAACCCTCAACTTCTTCCAACAAAGGGTTTCTCAGCTCAGTCCAACTCAGCT 336
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 169 CAAGAACCAAACCCTCAACTTCTTCCAACAAAGGGTTTCTCAACTCAGTCCAACTCAGCT 228
Query 337 TGGACCACGCTCTCTTTGCTCGTTCTCTCGCCTTTAATCTCACGCTTTCGCACCGTACTT 396
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 229 TGGAAGACGCTCTCTTTGCTCGTTCTCTCGCCTTTAATCTCACGCTTTCGCACCGTACCT 288
Query 397 CTCAAACCCTCATGCTAGATCCTGTCAACGACTGCCTTGAGCTGCTTGACGACACCCTCG 456
||||| |||||||||| || ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 289 CTCAATCCCTCATGCTCGACCCTGTCAACGACTGCCTTGAGCTACTTGACGACACGCTCG 348
Query 457 ACATGTTGTATCGCATCGTTGTCATCAAGCGTAAAGATCACGTCAATGATGATGTACATA 516
||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 349 ACATGTTGTCTCGCATCGTTGTCACCAAGCGTAAAGATCACGTCAACGACGATGTACATA 408
Query 517 CGTGGCTAAGCGCGGCGTTGACTAATCAAGAGACATGTAAGCAAAGCCTCAGTGAGAAAT 576
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 409 CGTGGCTAAGCGCGGCGTTGACTAATCAAGAGACTTGTAAGCAAAGCCTCAGTGAGAAAT 468
Query 577 CTAGCTTCAACAAAGAAGGAATTGCGATAGATTCTTTCGCAAGAAACCTCACCGGTTTAC 636
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 469 CTAGCTTCAACAAAGACGGAATCGCGATAGATTCCTTCGCAAGAAACCTCACCGGTTTAC 528
Query 637 TGACCAATTCACTAGACATGTTCGTGTCTGATAAACAGAAGAGTTCTTCTTCGTCTAATC 696
|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||
Sbjct 529 TGACCAATTCACTAGACATGTTCGTGTCCGATAAGCGGAAGAGTTCTTCTTCGTCTCGTC 588
Query 697 TAACTGGTGGCCGGAAACTGTTGTCCGATCATGATTTTCCGACGTGGGTTTCT-TCGTCA 755
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | ||||
Sbjct 589 TAACTGGTGGCCGGAAACTGTTGTCTGATCATGATTTTCCGTCGTGGTTTTCTAT-GTCA 647
Query 756 GACCGGAAGCTTTTAGAAGCTTCAGTAGAAGAGCTGAGACCTCACGCTGTGGTGGCAGCC 815
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 648 GACCGGAAGCTTTTAGAAGCTTCAGTAGAAGAACTGAGACCTCACGCAGTGGTGGCAGCC 707
Query 816 GACGGAAGCGGGACTCACATGAGCGTAGCCGAAGCGTTGGCGTCTTTGGAGAAGGGAAGT 875
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 708 GACGGAAGCGGGACACACATGAGCATAGCCGAAGCGTTGGCGTCTTTGGAGAAGGAAAGT 767
Query 876 GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATCTGAATATTCCGAGC 935
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 768 GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATCTCAATATTCCGAGC 827
Query 936 AAACAGAAGAACGTTATGTTGGTCGGTGACGGGAAGGGCAAAACAGTCATTGTCGGTAGC 995
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 828 AAACAGAAGAACGTTATGTTGGTTGGTGATGGGAAGGGCAAAACAGTCATTATCGGTAGC 887
Query 996 AGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCATGGGAGAT 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCATGGGAGAT 947
Query 1056 GGATTCATAGCTCGAGACATAACATTCGTGAACAGTGCCGGACCAAACTCGGAGCAAGCT 1115
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 948 GGATTCATAGCTCGGGACATAACATTCGTAAACAGTGCCGGACCAAACTCGGAGCAAGCT 1007
Query 1116 GTAGCATTACGGGTCGGATCAGATAGGTCCGTGGTATACAGATGCTCAATAGATGGGTAC 1175
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1008 GTAGCATTACGGGTCGGATCAGACAGGTCCGTGGTATACAGATGCTCAATCGATGGTTAC 1067
Query 1176 CAAGACTCACTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACCGACATAACAGGC 1235
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1068 CAAGACTCGCTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACTGACATTACCGGC 1127
Query 1236 ACCGTCGATTTCATCTTCGGAAACTCTGCCGTCGTTTTCCAAAGCTGCAACCTCGTATCT 1295
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1128 ACCGTTGATTTCATCTTCGGAAACTCCGCCGTTGTTTTCCAAAGCTGCAACCTCGTATCT 1187
Query 1296 CGTAAAGGCTCCTCGGACCAGAACTACGTCACGGCCCAAGGCCGGTCCGACCCGAACCAG 1355
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CGAAAAGGCTCCTCGGACGAGAACTACGTCACGGCCCAAGGCCGGTCCGACCCGAACCAG 1247
Query 1356 AACACCGGTATTTCTATCCATAATTGCAGAATAACCGGTTCGACCAAGACTTACTTGGGT 1415
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1248 AACACCGGTATTTCTATCCATAATTGCAGAATCACCGGTTCGACCAAGACTTATTTAGGT 1307
Query 1416 CGTCCATGGAAGCAGTATTCGAGGACTGTTGTGATGCAATCGTTTATAGACGGCTCGATT 1475
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1308 CGGCCATGGAAGCAGTATTCGAGGACAGTTGTGATGCAATCGTTTATAGACGGCTCGATT 1367
Query 1476 CACCCTTCGGGTTGGTCTCCTTGGTCGAGTAACTTTGCTTTGAAGACTCTTTATTACGGA 1535
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1368 CACCCTTCGGGTTGGTCTCCTTGGTCGAGTAGCTTTGCTTTGAAGACTCTTTATTACGGA 1427
Query 1536 GAATTTGGGAATTCGGGTCCTGGATCATCGGTGTCGGGTCGGGTTAGTTGGGCCGGGTAT 1595
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1428 GAATTTGGGAATTCGGGTCCTGGATCATCGGTTTCGGGTCGGGTTAGTTGGGCGGGGTAT 1487
Query 1596 CACCCGGCGTTGACGTTGACTGAAGCTCAAGGGTTTACTGTTTCGGGTTTCATTGACGGG 1655
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1488 CACCCGGCGTTGACGTTGACTGAAGCTCAGGGGTTTACCGTTTCGGGTTTCATTGACGGG 1547
Query 1656 AATTCTTGGTTGCCGTCAACAGGTGTCGTTTTCGACTCTGGCCTTTTATAATTTAAGTGA 1715
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1548 AAATCGTGGTTGCCGTCAACAGGTGTCGTTTTCGACTCTGGTCTTTTATAATTTAAATGA 1607
> Ahg483407 jgi|Araly1|483407|fgenesh2_kg.4__2467__AT2G43050.1
Length=1700
Score = 558 bits (302), Expect = 4e-158
Identities = 782/1007 (78%), Gaps = 60/1007 (6%)
Strand=Plus/Plus
Query 730 ATTTTCCGACGTGGGTTTCTTCGTC--AG-ACCGGAAGCTTTTAGAAGCTTCAGTAGAAG 786
|||||||||||| ||| ||||||| || | |||| |||| |||||||| | || || |
Sbjct 590 ATTTTCCGACGTTCGTTCCTTCGTCGGAGCAGCGGAGGCTTCTAGAAGCTCCCGTGGAGG 649
Query 787 AGCTG-AGACCTCACGCT-GTGGTGGCAGCCGACGGAAGCGGGACTCACATGAGCGTAGC 844
||||| || | | | | |||||||| ||||||||||| ||||| |||| | | |||
Sbjct 650 AGCTGAAG-GTTGATG-TGGTGGTGGCTGCCGACGGAAGTGGGACACACAAAACCATAGG 707
Query 845 CGAAG-C--GTTG---GCGTC-TTTG-GAGAAG-GGAAGTGGCAGAAGCGTAATCCATTT 895
|||| | |||| |||| || | ||| || || | ||||| | | ||| | |
Sbjct 708 AGAAGCCTTGTTGTCTACGTCATTAGCGAGTAGTGG--G-GGCAGGACCACAATATACCT 764
Query 896 AACAGCCGGAACCTATAAAGAGAATC-TGAATATTCCGAGC-AAACAGAAGAACGTTATG 953
|| |||||| |||||| | ||||| | | || ||||||| | || |||||||||||||||
Sbjct 765 AAAAGCCGGGACCTATCATGAGAA-CATCAACATTCCGA-CGAAGCAGAAGAACGTTATG 822
Query 954 TTGGTCGGTGACGGGAAGGGCAAAACAGTCATTGTCGGTAGCAGAAGTAACAGAGGCGGC 1013
|| || |||||||||||||| ||||| |||||||| |||||| ||||||| |||||||||
Sbjct 823 TTAGTTGGTGACGGGAAGGGTAAAACGGTCATTGTAGGTAGCCGAAGTAATAGAGGCGGC 882
Query 1014 TGGAATACTTACCAATCCGCTACTGTCGCCGCCATGGGAGATGGATTCATAGCTCGAGAC 1073
|||| ||||||| || | || || |||||||| |||||||| || |||||||| || |||
Sbjct 883 TGGACTACTTACAAAACTGCCACCGTCGCCGCGATGGGAGAGGGGTTCATAGCACGGGAC 942
Query 1074 ATAACATTCGTGAACAGTGCCGGA-CCAAACTCGGAGCAAGCTGTAGCATTACGGGTCGG 1132
|| ||||||||||||| |||||| ||||| ||||||||||| || || | || |||||
Sbjct 943 ATGACATTCGTGAACAACGCCGGACCCAAA-TCGGAGCAAGCGGTGGCGCTCCGTGTCGG 1001
Query 1133 ATCAGATAGGTCCG-TG-GTATACAGATGCTCAATAGATGGGTACCAAGACTCACTCTAC 1190
| |||||| |||| || | || | |||||||| | || || || ||||| |||||||||
Sbjct 1002 AGCAGATAAATCCGTTGTGCAT-C-GATGCTCAGTGGAAGGATATCAAGATTCACTCTAC 1059
Query 1191 ACTCTCTCCAAACGACAGTTCTATAGAGAAACCGACATAACAGGCACCGTCGATTTCATC 1250
|| | |||||||||||| |||||| |||| || || || || ||||||||||||||||||
Sbjct 1060 ACACACTCCAAACGACAATTCTATCGAGAGACAGATATCACCGGCACCGTCGATTTCATC 1119
Query 1251 TTCGGAAACTCTGCCGTCGT-TTTCCAAAGCT-GCAACCTCGTATCTCGTAAAGGCTCCT 1308
||||||||||| |||||||| |||| || || ||||| ||| |||||||| || |
Sbjct 1120 TTCGGAAACTCCGCCGTCGTATTTC-AAT-CTTGCAACATCGCCGCTCGTAAAC-CTT-T 1175
Query 1309 -C-GGACCAGA-A--CTACGTCACGGCCCAAGGCCGGTCCGACCCGAACCAGAACACCGG 1363
| || |||| | || ||| ||||| ||||| ||| | | ||| || ||||||||
Sbjct 1176 ACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGG 1235
Query 1364 TATTTCTATCCATAATTGCAGAATAAC--CGGT-TCGACCAAGACTTA-CTTGGGTCGTC 1419
|| || || || || || ||||| || ||| |||| |||||| ||||| ||| |
Sbjct 1236 AATCTCGATTCAAAACTGTAGAATCACGGCGGAATCGAT---GACTTATCTTGG-TCGGC 1291
Query 1420 CATGGAAGCAGTATTCGAGGACTGTTGTGATGCAATCGTTTATAGACGGCTCGATTCACC 1479
| |||||| ||||||||||||| || ||||||||||| ||| | | ||| || ||||| |
Sbjct 1292 CGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAATCTTTTCTCGGCGGGTCTATTCATC 1351
Query 1480 CTTCGGGTTGGTCTCCTTGGTCGAGTAACTTT-GCTTTGAAGA-CTCT-TTATTACGGAG 1536
| ||||||||||||||||||||| || ||| | | | || | |||| || ||||||||
Sbjct 1352 CGTCGGGTTGGTCTCCTTGGTCGGGTGG-TTTCGGTCTCAA-ATCTCTGTT-TTACGGAG 1408
Query 1537 AATTTGGGAATTCGGGTCCTGGATCATCGGTGTCGGGTCGGGTTAGTTGG-GCCGGGTAT 1595
|||||| |||||||||||||||||||||||| ||||||||||||| ||| | ||||||
Sbjct 1409 AATTTGAGAATTCGGGTCCTGGATCATCGGTTTCGGGTCGGGTTAAATGGAGT-GGGTAT 1467
Query 1596 CACCCGGCGTTGACGTTGACTGAAGCTCAAGGGTTTACTGTTTCGGGTTTCATTGACGGG 1655
|| | | |||||| |||| ||||| || || ||||| ||| ||| |||||||||
Sbjct 1468 CATTCTTCTTTGACGGTGACGGAAGCGGAAAAATTCACTGTGGCGGTTTTTATTGACGGG 1527
Query 1656 AAT-TCTTGGTTGCCGTCAACAGGTGTC-GTTTTCGACTCTGGCCTT 1700
||| | | ||||||||||||| || || |||| ||||||||| |||
Sbjct 1528 AATATGT-GGTTGCCGTCAACGGGCGTTAGTTT-CGACTCTGGACTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71990563050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5