BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59030.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938914 jgi|Araly1|938914|scaffold_503105.1 2438 0.0
> Ahg938914 jgi|Araly1|938914|scaffold_503105.1
Length=1566
Score = 2438 bits (1320), Expect = 0.0
Identities = 1485/1566 (95%), Gaps = 6/1566 (0%)
Strand=Plus/Plus
Query 34 GAGGAACTAATAAACGGACCATGAGCTCCACAGAGACATACGAGCCGTTATTGACACGAC 93
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 GAGGAACTAATAAACGGACCATGAGCTCCACCCAGACATACGAGCCGTTATTGACTCGAC 60
Query 94 TCCACTCGGATTCTCAGATAACTGAACGGTCTTCGCCAGAGATAGAGGAGTTTCTCCGCC 153
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 61 TCCACTCCTATTCTCAGATAACTGAACGGTCTTCGCCGGAGATAGAGGAGTTTCTACGCC 120
Query 154 GTCGTGGATCCACAGTGACACCACGGTGGTGGCTAAAGCTGGCAGTGTGGGAGTCAAAGC 213
||| || |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 GTCATGTATCCACGGTGACGCCACGGTGGTGGCTAAAGCTGGCCGTGTGGGAGTCAAAGC 180
Query 214 TTCTATGGACACTCTCTGGAGCCTCTATAGTGGTCTCTGTTCTGAATTACATGCTCAGCT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTATGGACACTCTCTGGAGCCTCTATAGTGGTCTCTGTTCTGAATTACATGCTCAGCT 240
Query 274 TCGTCACCGTCATGTTCACCGGTCATCTCGGTTCTCTTCAGCTCGCCGGCGCTTCCATCG 333
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTCACCGTCATGTTCACCGGCCATCTCGGTTCTCTTCAGCTCGCCGGCGCTTCCATCG 300
Query 334 CCACCGTCGGAATCCAAGGCCTAGCTTACGGTATCATGTTAGGAATGGCGAGCGCGGTCC 393
|||| || || |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 301 CCACTGTGGGCATCCAAGGTCTAGCTTACGGTATCATGTTGGGAATGGCGAGCGCGGTCC 360
Query 394 AAACAGTGTGTGGTCAAGCGTACGGAGCGAGACAGTACTCATCAATGGGAATAATCTGCC 453
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 AGACAGTGTGTGGTCAAGCGTACGGAGCGAGACAGTACTCGTCAATGGGAATAATCTGCC 420
Query 454 AACGAGCCATGGTCTTGCACCTTGCAGCTGCAGTCTTCCTCACGTTCCTCTACTGGTACT 513
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 421 AACGAGCCATGGTCTTGCACCTTGCAGCTGCATTCCTCCTCTCGTTCCTCTACTGGTACT 480
Query 514 CGGGTCCAATCCTTAAAA-CAATGGGCCAATCCGTAGCCATAGCACACGAGGGTCAGATC 572
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGGTCCAATCC-TAAAAGCAATGGGCCAATCCGTAGCCATAGCACACGAGGGTCAGATC 539
Query 573 TTTGCACGTGGAATGATTCCACAAATTTACGCATTTGCCCTCGCTTGCCCGATGCAGAGG 632
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 540 TTTGCACGCGGAATGATTCCACAGATTTACGCTTTTGCCCTCGCTTGCCCGATGCAGAGG 599
Query 633 TTTCTTCAGGCTCAGAACATAGTGAACCCTTTGGCTTACATGTCCTTAGGAGTTTTCTTG 692
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 TTTCTTCAAGCTCAGAACATAGTGAACCCTTTGGCTTACATGTCTTTAGGAGTTTTCTTG 659
Query 693 CTCCACACGTTACTCACGTGGCTGGTTACCAACGTGCTGGATTTCGGCTTGCTTGGGGCG 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 CTCCACACGTTACTCACGTGGCTGGTTACCAACGTGCTGGATTTCGGCTTGCTTGGTGCG 719
Query 753 GCTCTGATTCTCAGTTTCTCATGGTGGCTGCTAGTAGCTGTGAATGGTATGTATATCTTG 812
|||||||||||||||||||||||||||||||| || | || ||| ||| |||||||| ||
Sbjct 720 GCTCTGATTCTCAGTTTCTCATGGTGGCTGCTTGTGGTTGCGAACGGTCTGTATATCGTG 779
Query 813 ATGAGCCCGAATTGTAAGGAGACATGGACAGGGTTTTCAACGAGGGCATTTAGAGGGATA 872
|||||| ||| |||||||||||| ||||| ||||||||||| |||||||||| |||||||
Sbjct 780 ATGAGCACGAGTTGTAAGGAGACTTGGACCGGGTTTTCAACTAGGGCATTTACAGGGATA 839
Query 873 TGGCCTTACTTCAAGCTCACGGTAGCTTCAGCAGTTATGCTATGTTTGGAGATATGGTAC 932
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 TGGCCTTACTTCAAGCTCACGGTAGCTTCAGCAGTCATGCTATGTTTGGAGATATGGTAC 899
Query 933 AACCAAGGGCTAGTGATTATCTCTGGTTTACTCTCCAATCCGACAATTTCTCTAGACGCT 992
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 AACCAAGGGCTAGTGATTATCTCTGGTTTACTCACCAATCCGACAATTTCTCTAGACGCG 959
Query 993 ATTTCGATTTGCATGTATTACTTGAATTGGGATATGCAGTTCATGCTTGGTCTAAGTGCA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATTTCGATTTGCATGTATTACTTGAATTGGGATATGCAGTTCATGCTTGGTCTAAGTGCA 1019
Query 1053 GCAATCAGTGTGCGAGTGAGCAATGAGCTAGGAGCGGGAAATCCACGAGTGGCTATGTTA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 GCAATCAGTGTGCGAGTGAGCAATGAGCTAGGAGCGGGAAATCCACGAGTGGCTAAGTTA 1079
Query 1113 TCAGTAGTGGTTGTCAACATCACGACTGTTCTCATCAGC-TCAGTTCTCTGTGTCATCGT 1171
||||||||||| || ||| | ||||| |||||||| ||| | ||||||||||||||| ||
Sbjct 1080 TCAGTAGTGGTGGTTAACGTTACGACGGTTCTCATTAGCCT-AGTTCTCTGTGTCATTGT 1138
Query 1172 GCTTGTGTTCCGCGTTGGCCTTAGCAAAGCCTTCACCAGCGATGCAGAAGTTATAGCAGC 1231
||| ||||||||||| |||||||||||||| ||||| ||| | |||||||||||||||||
Sbjct 1139 GCTCGTGTTCCGCGTCGGCCTTAGCAAAGCTTTCACGAGCAACGCAGAAGTTATAGCAGC 1198
Query 1232 CGTCTCTGACCTCTTTCCTCTTCTCGCCGTTTCCATTTT-CTTAAACGGAATCCAGCCAA 1290
|||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||
Sbjct 1199 CGTCTCTGACCTCTTTCCTCTTCTCGCCATTTCCATTTTTCT-AAACGGAATCCAACCAA 1257
Query 1291 TTCTCTCTGGGGTTGCTATTGGGAGTGGGTGGCAAGCAGTGGTGGCTTATGTGAATCTTG 1350
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1258 TTCTCTCAGGGGTTGCTATTGGGAGTGGGTGGCAAGCAGTGGTGGCCTATGTGAATCTTG 1317
Query 1351 TTACGTACTATGTCATTGGTCTTCCTATTGGCTGTGTCCTTGGCTTCAAAACCAGTCTTG 1410
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1318 TTACTTACTATGTCATTGGTCTTCCTATTGGCTGTGTTCTTGGCTTCAAAACTAGTCTTG 1377
Query 1411 GAGTTGCTGGGATCTGGTGGGGGATGATTGCAGGAGTCATACTTCAAACCCTAACTTTGA 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGTTGCTGGGATCTGGTGGGGGATGATTGCAGGAGTCATACTTCAAACCCTAACTTTGA 1437
Query 1471 TTGTTCTTACACTTAAAACTAATTGGACTTCCGAGGTAGAAAATGCAGCTCAGAGAGTAA 1530
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTGTTCTTACACTTAGAACCAATTGGACTTCCGAGGTAGAAAATGCAGCTCAGAGAGTAA 1497
Query 1531 AGACTTCGGCAACTGAGAATCAAGAGATGGCTAACGCAGGTGTTTAAGATAACAGCAACA 1590
|||| ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||
Sbjct 1498 AGACCTCGGCAACTGAGAATCAAGAGATGGCTTACGAAGGCATTTAAGAGAACAGCAACA 1557
Query 1591 GTGACT 1596
| ||||
Sbjct 1558 GCGACT 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5