BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59052.1 Length=2039 Score E Sequences producing significant alignments: (Bits) Value Ahg486367 jgi|Araly1|486367|fgenesh2_kg.5__2359__AT3G59052.1 2953 0.0 Ahg483403 jgi|Araly1|483403|fgenesh2_kg.4__2463__AT2G43018.1 1275 0.0 > Ahg486367 jgi|Araly1|486367|fgenesh2_kg.5__2359__AT3G59052.1 Length=1997 Score = 2953 bits (1599), Expect = 0.0 Identities = 1871/1998 (94%), Gaps = 36/1998 (2%) Strand=Plus/Plus Query 47 CTCATTG-TTTTGCTTCAAATTACGCATTCGAATCTGATCTTCGTTGATCTCTGTGGAAG 105 ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 29 CTCTTTGATTTTGCTTCAGATTACGCATTCGAATCTGATCTTCGTTGATCTCTGTGGAAG 88 Query 106 AAACAGATAAGAGAAAATCGCATGAAtttttttAGAAAACTAGGTTTTAATCCTTCGATT 165 |||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 89 AAACTGATAAGAGAAAATCGCATGAATTTTTTTGGAAAACTAGGTTTTAATTCATCGATT 148 Query 166 GCAAGCTACTTCACTAATACGAGTCTTCTGATCTCAATTCTTAGTTTTTCTCCTCAATTG 225 |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 149 TCAAGCTACTTCACTAATACGTGTCTTCTGATTTCAATTCTTAGTTTTTCTCCTCAATTG 208 Query 226 CCGATTTCTCTCTTTCTTTTCGAGCAGAAATCGTTAGATCCTTTATCGCTG--T-GTAAT 282 |||||||| ||||||||||| |||||||||||||||||||||||||||||| | || | Sbjct 209 CCGATTTCGCTCTTTCTTTTTGAGCAGAAATCGTTAGATCCTTTATCGCTGAATAATACT 268 Query 283 AGTAGTACTAATTTTAATAATCTTGAGAGTAATTACTCCGTTCATTGTTGAATCATGGAG 342 |||| ||||||||||||||||| | ||||||||| || | ||||||||||||||||||| Sbjct 269 AGTAATACTAATTTTAATAATCCCGTGAGTAATTAGTCTGATCATTGTTGAATCATGGAG 328 Query 343 TCCGGAGGCAAAACTAATCGTCAGCTGCGTAAAGCTATTTGCGTCTCAACAGACGAGAAG 402 ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct 329 TCCGGAGGCAAAACTAATCGTCAGCTGCGTAAAGCTATTTGTGTCTCAGCCGACGAGAAG 388 Query 403 ATGAAGAAGAAGAGATCACCTTCAGTGATAGTGATTGGAGGTGGTATGGCTGGAATTTCA 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 ATGAAGAAGAAGAGATCACCTTCAGTGATAGTGATTGGAGGTGGTATGGCTGGAATTTCA 448 Query 463 GCCGCTCGCACTCTTCAGGATGCTTCCTTTCAGGTTGTTGTATTGGAGTCTCGTGACAGA 522 || |||||||||||||| |||||||||||||||||||| || |||||||||||||| ||| Sbjct 449 GCTGCTCGCACTCTTCAAGATGCTTCCTTTCAGGTTGTGGTGTTGGAGTCTCGTGATAGA 508 Query 523 ATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCAGTTGATCTCGGTGCATCT 582 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 509 ATTGGTGGACGAGTTCACACTGATTACTCATTCGGTTTTCCAGTTGATCTGGGTGCATCT 568 Query 583 TGGTTGCATGGTGTCTGTAAAGAGAATCCTTTGGCTGCAGTAATTGGTAGATTAGGATTA 642 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 569 TGGTTGCATGGTGTCTGTAAAGAGAATCCTCTGGCTGCAGTAATTGGGAGATTAGGATTA 628 Query 643 CCTCTTTATCGTACTAGCGGTGACAATTCGGTTTTGTATGATCACGATCTTGAGAGTTAT 702 || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 629 CCCCTTTATCGTACTAGTGGTGACAATTCGGTTTTGTATGATCACGATCTTGAGAGCTAT 688 Query 703 GCTCTGTTCGACAAGGCTGGTAACCAAGTTTCTCAAGAGTTGGTGACAAAAGTTGGCGAA 762 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 689 GCTCTATTCGACAAGGCTGGCAACCAAGTTCCTCAAGAGTTGGTAACAAAAGTTGGCGAA 748 Query 763 AATTTTGAGCACATTCTGGAAGAGATCTGTAAAGTCAGGGATGAGCAGGACGAAGACATG 822 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 749 AATTTTGAGCACATTCTGGAAGAGATCTCTAAAGTCAGGGATGAGCAGGACGAAGACATG 808 Query 823 TCAATAGCTCAAGCCTTTTCTATTGTATTTAAGAGGAACCCTGAATTGAGGTTGGAGGGA 882 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 809 TCAATAGCTCAAGCCTTTTCTATTGTATTCAAGAGGAACCCTGAATTGAGGTTGGAGGGG 868 Query 883 CTTGCCCATAATGTGCTTCAGTGGTACTTGTGCCGCATGGAAGGATGGTTTGCTGCTGAT 942 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 CTTGCTCATAATGTGCTTCAGTGGTACTTGTGCCGCATGGAAGGATGGTTTGCTGCTGAT 928 Query 943 GCTGAAACCATCTCGGCAAAGTGTTGGGATCAGGAAGAACTGTTGCCCGGTGGACATGGT 1002 ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| Sbjct 929 GCTGAAACCATCTCGGCAAAGTGTTGGGACCAGGAAGAACTATTGCCTGGTGGACATGGT 988 Query 1003 CTTATGGTTAGAGGGTATCGCCCTGTAATCAACACTCTCTCGAAAGGTCTTGATATACGA 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 989 CTTATGGTTAGAGGGTATCGCCCTGTAATCAACACTCTCTCGAAAGGTCTTGATATACGA 1048 Query 1063 CTAAGTCACAGAATTACCAAGATT-TCAAGGCGCTACAGTGGTGTGAAGGTGACTACAGA 1121 ||||| ||||| ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct 1049 CTAAGCCACAGGGTTACCAAGATTGT-AAGGCGCTACAGTGGAGTGAAGGTGACTACAGA 1107 Query 1122 GAAAGGAGACACGTTTGTTGCGGATGCTGCAGTCATTGCTCTTCCTCTAGGAG-TCTTAA 1180 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 1108 GAAAGGAGACACGTTTGTTGCGGATGCTGCAGTCATTGCTCTTCCTCTTGGAGTTC-TAA 1166 Query 1181 AGTCAGGAATGATAACATTCGAACCAAAGCTTCCACAGTGGAAACAAGAAGCTATCAACG 1240 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1167 AGTCAGGAATGATAACATTCGAACCAAAGCTTCCACAGTGGAAACAGGAAGCTATCAACG 1226 Query 1241 ATCTCGGTGTTGGAATCGAGAACAAGATCATATTGAATTTTGACAACGTCTTTTGGCCAA 1300 |||||||||| ||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 1227 ATCTCGGTGTAGGAATCGAGAACAAGATCATACTGCACTTTGACAATGTCTTTTGGCCAA 1286 Query 1301 ACGTAGAGTTTTTAGGAGTCGTTGCAGAAACTTCCTACGGATGCAGTTATTTCTTGAACC 1360 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1287 ACGTAGAGTTTCTAGGAGTGGTTGCAGAAACTTCCTACGGATGCAGTTATTTCTTGAACC 1346 Query 1361 TGCATAAAGCCACAAGCCATCCTGTCCTTGTTTACATGCCGGCTGGTCAGCTCGCTAGAG 1420 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1347 TGCATAAAGCCACAAGCCATCCCGTTCTTGTTTACATGCCGGCTGGTCAGCTCGCTAGAG 1406 Query 1421 ACATCGAGAAAAAGTCCGATGAAGCAGCTGCAAATTTTGCCTTTTCGCAACTACAGAAAA 1480 |||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1407 ACATAGAGAAAAAGTCTGATGAATCAGCTGCAAATTTTGCCTTTTCGCAACTCCAGAAAA 1466 Query 1481 TTCTTCCAGATGCCTCTTCACCGATAAATTATTTGGTATCAAGGTGGGGATCAGACATCA 1540 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1467 TTCTTCCAGATGCATCTTCACCGATAAATTATTTGGTATCAAGGTGGGGATCAGACATCA 1526 Query 1541 ATTCATTGGGATCATATAGCTATGACATTGTGAACAAACCTCACGACCTCTATGAGAGAC 1600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1527 ATTCATTGGGATCATATAGCTATGACATTGTGAACAAACCTCACGACCTCTATGAGAGAC 1586 Query 1601 TGAGAGTGCCATTGGATAATCTATTCTTTGCGGGGGAAGCCACTAGCTCAAGCTACCCGG 1660 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1587 TGAGAGTGCCATTGGATAATCTATTCTTTGCGGGGGAAGCCACTAGCTCGAGCTACCCGG 1646 Query 1661 GATCAGTGCACGGTGCTTATTCAACCGGAGTGCTGGCAGCTGAAGACTGCAGGATGCGTG 1720 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1647 GGTCAGTGCACGGTGCTTATTCAACCGGAGTGCTGGCAGCTGAAGACTGCAGGATGCGTG 1706 Query 1721 TGCTTGAGCGCTATGGAGAGCTCGAACATGAGATGGAAGAGGAAGCTCCTGCTTCTGTCC 1780 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1707 TGCTTGAGCGCTATGGAGAGCTTGAACATGAGATGGAAGAGGAAGCTCCTGCTTCTGTCC 1766 Query 1781 CTCTTCTGATCTCCCGTATGTAATTTAAACCTCAGGTGTTTTATATCACCTCCATATGGG 1840 ||||| |||||||||||||||| ||| |||||||||| | ||| || | || || Sbjct 1767 CTCTTTTGATCTCCCGTATGTAGTTTGAACCTCAGGT-TGTTAGATT---TG-ATTTG-- 1819 Query 1841 AAC-ATTGTTAGATTTGATTTTATGAGATTTCACTAGTTGGAACTCTTGTGCCTATTCAA 1899 | | ||| | | | ||||| || | | |||||||||||||||| | || | | Sbjct 1820 A-CTATT-T-A--T--GATTTCAT-A--T--CACTAGTTGGAACTCT----CA-ATGCCA 1862 Query 1900 TACCACTCTTTTTTCCTTCAAATCTGATTCAGATCTTTAGTCGAAGTCAAATGTGCAATG 1959 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1863 --C-ACTCTGATTTCCTTCAAATCTGATTCAGATCTTTAGTCGAAGTCAAATGTGCAATG 1919 Query 1960 TGGAGTATGTAATCCATCTGATATAAGAACTATGTTTAAGTATCAGTGCCAAATGCAAAC 2019 |||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||| Sbjct 1920 TGGAGTATGTAATCCATCTGATCCGAGAACTATGTTTAAGTATTAATGCCAAACGCAAAC 1979 Query 2020 TTCAAATGAAGCTTTCTT 2037 ||||||| ||| |||||| Sbjct 1980 TTCAAATAAAGATTTCTT 1997 Score = 76.8 bits (41), Expect = 6e-13 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 3 CGACTCCTGAGCCTCTCTCTTTCTATCGCTCTTTGATTTTG 43 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CGACTCCTGAGCCTCTCTCTTTCTATCGCTCTTTGATTTTG 41 > Ahg483403 jgi|Araly1|483403|fgenesh2_kg.4__2463__AT2G43018.1 Length=1985 Score = 1275 bits (690), Expect = 0.0 Identities = 1228/1485 (83%), Gaps = 48/1485 (3%) Strand=Plus/Plus Query 279 TAATAGTAGTAC-TAATTTTAATAATCTTGAGAGTAATTAC-TCCGTTC-ATTG-TTGAA 334 |||||||| | | ||||| |||||||| |||||||| | | | | || |||| | || Sbjct 364 TAATAGTAAT-CGTAATTCCAATAATCTCGAGAGTAA-T-CGTTTGATCAATTGAATAAA 420 Query 335 TCATGGAGTCCGGAGGCAAAA--CTAATCGTCAGCTGCGTAAAGCTATTTGCGTCTCAAC 392 ||||||||| | ||| |||| || ||||||| |||||| ||||| |||| | ||| | Sbjct 421 TCATGGAGT-C-TAGGAAAAACTCTGATCGTCAAATGCGTAGAGCTAATTGCTTTTCAGC 478 Query 393 AGACGAGAAGATGAAGAAGAAGAGATCACCTTCAGTGATAGTGATTGGAGGTGG-TATGG 451 | |||| ||||||| | ||| | || || || ||||| ||||| |||||||| | ||| Sbjct 479 TGGTGAGAGGATGAAG-ACAAG-G-TCTCCGTCCGTGATTGTGATCGGAGGTGGTTTTGG 535 Query 452 CTGGAATTTCAGCCGCTCGCACTCTTCAGGATGCTTCCTTTCAGGTTGTTGTATTGGAGT 511 ||| |||||||| |||||||||||||| |||||||||||||||||| | ||| |||||| Sbjct 536 -TGGGATTTCAGCTGCTCGCACTCTTCAAGATGCTTCCTTTCAGGTTATGGTACTGGAGT 594 Query 512 CTCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCAGTTGATC 571 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 595 CCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATC 654 Query 572 TCGGTGCATCTTGGTTGCATGGTGTCTGTAAAGAGAATCCTTTGGCTGCAGTAATTGGTA 631 | |||||||| ||| ||||||| || || |||||||||||| |||| |||||||||| | Sbjct 655 TTGGTGCATCATGGCTGCATGGAGTATGCAAAGAGAATCCTCTGGCACCAGTAATTGGAA 714 Query 632 GATTAGGATTACCTCTT-TATCGTACTAGCGGTGACAATTCGGTTTTGTATGATCACGAT 690 || | ||| | || ||| ||||||||||||||||||||||| || |||||||||| ||| Sbjct 715 GACTGGGACTGCC-CTTGTATCGTACTAGCGGTGACAATTCTGTCCTGTATGATCATGAT 773 Query 691 CTTGAGAGTTATGCTCTGTTCGACAAGGCTGGTAACCAAGTTTCTCAAGAGTTGGTGACA 750 || ||||| ||||||||||| || | || ||| ||||||||| ||||||||||||| || Sbjct 774 CTCGAGAGCTATGCTCTGTTTGATATGGATGGCAACCAAGTTCCTCAAGAGTTGGTAACT 833 Query 751 AA-AGTTGGCGAAAATTTTGAGCACATTCTGGAAGAGATCTGTAAAGTCAGGGATGAGCA 809 | | |||||| || |||||||| ||| ||||||||||| |||||||||||||||||| Sbjct 834 CAGA-TTGGCGTAACTTTTGAGCGTATTTTGGAAGAGATCAATAAAGTCAGGGATGAGCA 892 Query 810 GGACGAAGACATGTCAATAGCTCAAGCCTTT-TCTATTGTATTTAAGAGGAA-CCCTGAA 867 ||| | |||||| ||||| |||| || ||| || ||||| ||| ||||| ||| || Sbjct 893 GGATGCAGACATTTCAATTTCTCAGGC-TTTCTCAATTGTCTTTGCTAGGAAACCC-GAG 950 Query 868 TTGAGGTTGGAGGGACTTGCCCATAATGTGCTTCAGTGGTACT-TGTGCCGCATGGAAGG 926 ||||||| ||||| ||||| || || || ||||| ||||| | | |||||||||||||| Sbjct 951 CTGAGGTTAGAGGGGCTTGCACACAACGTACTTCAATGGTA-TGTATGCCGCATGGAAGG 1009 Query 927 ATGGTTTGCTGCTGATGCTGAAACCATCTCGGCAAAGTGTTGGGATCAGGAAGAACTGTT 986 |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| || | Sbjct 1010 ATGGTTTGCTGCAGATGCTGAAACCATCTCTGCAAAGTGTTGGGACCAGGAGGAATTGCT 1069 Query 987 GCCCGGTGGACATGGTCTTATGGTTAGAGGGTATCGCCCTGTAATCAACACTCTCTCGAA 1046 ||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct 1070 GCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAACACTCTGGCGAA 1129 Query 1047 AGGTCTTGATATACGACTAAGTCACAGAATTACCAAGATT-TCAAGGCGCTACAGTGGTG 1105 |||||||||||| ||| || | ||||| |||| |||||| ||| |||| |||| ||| | Sbjct 1130 AGGTCTTGATATCCGAGTAGGCCACAGGGTTACTAAGATTGTCA-GGCGTTACAATGGGG 1188 Query 1106 TGAAGGTGACTACAGAGAAA-GGAGACACGTTTGTTGCGGATGCTGCAGTCATTGCTCTT 1164 ||||||| || ||||| ||| || || || |||||||||||||||||||||||||| || Sbjct 1189 TGAAGGTAACGACAGA-AAACGGGGAAACATTTGTTGCGGATGCTGCAGTCATTGCGGTT 1247 Query 1165 CCTCTAGGAGTCTTAAAGTCAGGAATGATAACA-TTCGAACCAAAGCTTCCACAGTGGAA 1223 ||||| ||||||||||| || |||| |||| | |||||||||||||| || ||||||| Sbjct 1248 CCTCTCGGAGTCTTAAAATCTGGAACCATAA-AGTTCGAACCAAAGCTACCTGAGTGGAA 1306 Query 1224 ACAAGAAGCTATCAACGATCTCGGTGTTGGAATCGAGAACAAGATCATATTGA-ATTTTG 1282 ||||||||| |||||||| || || || || |||||||||||||||||| | | |||||| Sbjct 1307 ACAAGAAGCAATCAACGACCTAGGAGTAGGTATCGAGAACAAGATCATACT-ACATTTTG 1365 Query 1283 ACAACGTCTTTTGGCC-AAACGTAGAGTTTTTAGGAGTCGTTGCAGAAACTTCCTACGGA 1341 | || ||||| ||||| ||| ||||||||| ||||||| || || ||||| |||||||| Sbjct 1366 AGAAAGTCTTCTGGCCGAAA-GTAGAGTTTCTAGGAGTGGTAGCTGAAACCTCCTACGGT 1424 Query 1342 TGCAGTTATTTCTTGAACCTGCATAAAGCCACAAGCCATCCTGTCCTTGTTTACATGCCG 1401 ||||||||||| ||||||||||| || |||||| | ||||| || || |||||||||||| Sbjct 1425 TGCAGTTATTTTTTGAACCTGCACAAGGCCACAGGTCATCCAGTTCTGGTTTACATGCCG 1484 Query 1402 GCTGGTCAGCTCGCTAGAGACATCGAGAAAAAGTCCGATGAAGCAGCTGCAAATTTTGCC 1461 |||||||||||||| | |||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 1485 GCTGGTCAGCTCGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCAAATTTTGCC 1544 Query 1462 TT-TTCGCAACTACAGAAAATTCTTCCAGATGCCTCTTCA-CC-GATAAATTAT-TTGGT 1517 | || |||||| |||| ||||||||| ||||| | | | || | | ||| || ||| | Sbjct 1545 GTCTT-GCAACTCCAGAGAATTCTTCCCGATGCAT-TGCCTCCAGTTCAAT-ATCTTG-T 1600 Query 1518 ATCAAGGTGGGGATCAGACATCAATTCATTGGGATCATATAGCTATGACATTGTGAACAA 1577 ||| ||||||||||| || | |||||| ||||||| ||||||||||| || ||| || Sbjct 1601 ATCGAGGTGGGGATCGGATGTGAATTCAATGGGATCTTATAGCTATGATATCGTGGGGAA 1660 Query 1578 ACCTCACGACCTCTATGAGAGACTGAGAGTGCCATTGGATAATCT-ATTCTTTGCGGGGG 1636 |||||| || ||||| ||||| || || || ||| ||||||| || ||||||||| || | Sbjct 1661 ACCTCATGAGCTCTACGAGAGGCTTAGGGTTCCAGTGGATAA-CTTATTCTTTGCCGGTG 1719 Query 1637 AAGCCACTAGCTCAAGCTACCCGGGATCAGTGCACGGTGCTTATTCAACCGGAGTGCTGG 1696 |||| || ||||| |||| |||||| || || ||||| ||||||||||| ||| || ||| Sbjct 1720 AAGCGACAAGCTCGAGCTTCCCGGGCTCGGTTCACGGCGCTTATTCAACTGGATTGATGG 1779 Query 1697 CAGCTGAAGACTGCAGGATGCGTGTGCTTG-AGCGCTATGGAGAG 1740 |||||||||| || |||||||| || ||| |||| ||||| ||| Sbjct 1780 CAGCTGAAGAATGTAGGATGCGAGTT-TTGGAGCGGTATGGTGAG 1823 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76675663185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5