BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59060.2
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938917 jgi|Araly1|938917|scaffold_503108.1 1999 0.0
> Ahg938917 jgi|Araly1|938917|scaffold_503108.1
Length=1360
Score = 1999 bits (1082), Expect = 0.0
Identities = 1276/1367 (93%), Gaps = 23/1367 (2%)
Strand=Plus/Plus
Query 326 GATCTGACATGGAACAAGTGTTTGCTGATTGGAATTTTGAAGATAATTTTCACATGTCCA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 GATCTGACATGGAACAAGTGTTTGCTGATTGGAATTTTGAAGATAATTTTCACATGTCCA 72
Query 386 CTAATAAAAGATCAATCAGACCAGAAGATGAATTAGTGGAGCTATTGTGGAGAGATGGTC 445
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 73 CTAATAAAAGATCAATCAGACCAGAAGATGAACTAGTGGAGCTACTGTGGAGAGATGGTA 132
Query 446 AAGTGGTTTTACAAAGCCAAGCTCGTAGAGAACCGTCAGTCCAAGTCCAAACCCACAAAC 505
||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 133 AAGTGGTTTTACAAAGCCAAGGTCGTAGAGAACCGTCAGT-----TC-AAACCCACAAAC 186
Query 506 AAGAAACCCTAAGAAAACCCAACAATATTTTTCTTGACAACCAAGAAACAGTACAAAAGC 565
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 187 AAGAATCCCTAAGAAAACCCAACAACATTTTTCTTGATAACCAAGAAACAGTACAAAAGC 246
Query 566 CTAACTACGCTGCTCTAGATGATCAAGAAACCGTCTCCTGGATACAAT-ACCCTCCGGAT 624
|| | || ||| ||| | ||||||||||||||||||||||| |||| ||||||| |||
Sbjct 247 TTAGCAACTCTGTTCTTCAGGATCAAGAAACCGTCTCCTGGAT-CAATTACCCTCCCGAT 305
Query 625 GACGTCATCGACCCTTTCGAATCCGAGTTCTCCTCTCATTTCTTCTCTTCGATCGATCAC 684
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GACGTCATGGACCCTTTTGAATCCGAGTTCTCCTCTCATTTCTTCTCTTCGATCGATCAC 365
Query 685 CTCGGA-GGTCCTGAGAAGCCACGAACGATCGAAGAGACAGTTAAGCATGAGGCTCAAGC 743
|| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GTCC-ACGGTCCAGAGAAACCACGAACGATCGAAGAGACAGTTAAGCATGAGGCTCAAGC 424
Query 744 CATGGCTCCTCCTAAGTTTAGATCCTCGGTTATAACAGTCGGACCGAGTCATTGCGGCAG 803
|||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| ||
Sbjct 425 CATGGCTCCTCCTAAGTTGCGATCCTCTGTTATAACAGTCGGACCAAGCCATTGCGGTAG 484
Query 804 CAACCAGTCAACAAATATTCATCAGGCCACTACACTTCCGGTTTCTATGAGTGATAGAAG 863
||||||||| || ||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 485 CAACCAGTCTACCAATATTCATCAAGTGACTACACTTCCGGTATCTATGAGTGATAGAAC 544
Query 864 CAAGAACGTCGAAGAAAGACTTGACACTTCGTCAGGTGGCTCCTCCGGTTGCAGCTATGG 923
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 545 CAAGAACGTCGAAGAAAGACTTGACACTTCGTCCGGTGGCTCCTCCGGTTGCAGCTACGG 604
Query 924 AAGGAACAACAAAGAAACCGTTAGTGGAACAAGTGTAACCATTGACCGTAAAAGAAAACA 983
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 605 AAGGAACAACAAAGAAACCGTTAGTGGAAGAAGCGTAACCATTGACCGTAAAAGAAAACA 664
Query 984 TGTTATGGATGCTGATCAAGAATCTGTGTCTCAATCAGATATAGGTTTGACCTCAACCGA 1043
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGTAATGGATGCTGATCAGGAATCTGTGTCTCAATCAGATATAGGTTTGACCTCAACCGA 724
Query 1044 TGATCAAACCATGGGTAACAAATCGAGCCAACGGTCAGGATCTACTCGAAGAAGCCGTGC 1103
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 725 TGATCAAGCCATGGGTAACAAATCGAGCCAGCGGTCAGGATCTACTCGAAGAAGCCGTGC 784
Query 1104 AGCTGAAGTTCATAATCTCTCAGAAAGGAGGAGGAGAGATCGGATCAATGAAAGAATGAA 1163
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 785 AGCTGAAGTTCATAATCTCTCAGAAAGGAGGAGGAGAGACCGGATCAATGAAAGAATGAA 844
Query 1164 AGCTCTTCAAGAACTCATACCTCACTGCAGCA-GAACAGATAAAGCTTCGATATTGGATG 1222
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 845 AGCTCTTCAAGAACTCATACCTCACTGCAGCAAGA-CAGATAAAGCTTCGATATTGGATG 903
Query 1223 AAGCAATTGATTACTTAAAATCACTTCAAATGCAACTCCAAGTGATGTGGATGGGAAGTG 1282
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AAGCAATTGATTACTTGAAATCACTTCAAATGCAACTCCAAGTGATGTGGATGGGAAGTG 963
Query 1283 GAATGGCGGCGGCGGCAGCAGCAGCAGCAAGTCCGATGATGTTTCCCGGGGTACAATCAT 1342
|||||||||| ||||| ||||||||| | | ||||||||||||||| || ||||||||||
Sbjct 964 GAATGGCGGCAGCGGCTGCAGCAGCAACTACTCCGATGATGTTTCCTGGCGTACAATCAT 1023
Query 1343 CTCCATACATTAATCAGATGGCTATGCAAAGTCAGATGCAATTGTCTCAATTCCCGGTTA 1402
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1024 CTCCATACATTAATCAGATGGCTATGCAGAGTCAGATGCAATTGCCTCAATTCCCGGTTA 1083
Query 1403 TGAACCGGTCCGCTCCGCAGAACCATCCCGGTTTAGTATGTCAAAACCCGGTACAGTTGC 1462
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 1084 TGAACCGGTCCGCTCCACAGAATAATCCCGGTTTAGTATGCCAAAACCCGGTACAGTTTC 1143
Query 1463 AGCTCCAAGCACAGAACCAAATCTTATCGGAGCAGCTCGCTAGGTACATGGGCGGGATTC 1522
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1144 AGCTCCAAGCACATAACCAAATCTTATCGGAGCAGCTCGCTAGGTACATGGGCGGGTTTC 1203
Query 1523 CCCAGATGCCGCCGGCGG-GAAATCAGATGCAGACCGTGCAACAACAACCAGCGGACATG 1581
|||||||||||||||||| ||| |||| || | |||||||| | | ||| |||||
Sbjct 1204 CCCAGATGCCGCCGGCGGCGAA-TCAG--GC---C-GTGCAACAGC--C-AGCAGACATA 1253
Query 1582 TTGGGATTTGGATCTCCGGCGGGACCGCAAAGTCAACTGTCGGCACCGGCGACCACCGAC 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTGGGATTTGGATCTCCGGCGGGACCGCAAAGTCAACTGTCGGCACCGGCGACCACCGAC 1313
Query 1642 AGTCTTCATATGGGTAAAATAGGCTGACTTGGCATATAGTTTTCCTC 1688
||||||||||| |||||||||| ||||| ||||||||| ||||||||
Sbjct 1314 AGTCTTCATATTGGTAAAATAGCCTGACGTGGCATATAATTTTCCTC 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5