BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59070.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486373 jgi|Araly1|486373|fgenesh2_kg.5__2365__AT3G59070.1 1751 0.0
> Ahg486373 jgi|Araly1|486373|fgenesh2_kg.5__2365__AT3G59070.1
Length=1440
Score = 1751 bits (948), Expect = 0.0
Identities = 1123/1208 (93%), Gaps = 10/1208 (1%)
Strand=Plus/Plus
Query 1 ATGTCCTTGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCATGTTGATTCCA 60
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCTTTGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCGTGTTGATTCCA 60
Query 61 TCTTTTACGACAGCAGCAACAGAACAAGGACTTCATGCTAGATCTAGATGTGAATCTTAC 120
||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||
Sbjct 61 TCTTTTACGACAGCAACAACAGAACAAGGACTTCA---T-G--CTAGATGTGAATCTTAC 114
Query 121 AGCTTCAACAACGGAAAAAGCTTTCGCTCTTGCACGGATCTTTTGGTGTTAAACTCTTAT 180
||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 115 AGCTTCAACAACGGAAAAAGCTTTCGCTCGTGCACGGATCTTCCGGTGCTAAACTCTTAT 174
Query 181 CTACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCATACCATCACTCCAAT 240
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 175 CTACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCCTACCGTCACTCCAAT 234
Query 241 CTTGAGTCTTCTAGTTGGATATCGTGGGCTATAAACCCGACAAGCAAAGGCATGGTGGGA 300
|||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||
Sbjct 235 CTTGAGTCTTCTAGTTGGATCGCGTGGGCTATAAACCCGACGAGTAAAGGCATGTTGGGA 294
Query 301 GCTCAAGCACTCGTGGCTTATCGAAACTCAACTTCTGGTGTCATGCGTGCTTATACTTCC 360
||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 295 GCTCAAGCACTTGTGGCTTATCGAAACTCAACTTCTAGTGTTATGCGTGCTTATACTTCC 354
Query 361 TCCATTAATAGCTACTCTCCTATGCTTCAAGAGTCTCCTCTTAGCCTTCGTGTAACACAA 420
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 355 TCCATTAATAGCTACTCTCCTATGCTTCAAGAATCTCCTCTTAGCTTTCGTGTAATGCAA 414
Query 421 GTATCCGCTGAGTATTCTAATGGAGAGATGATGATATTTGCAACTTTAGTCTTGCCTCCT 480
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTATCCGCCGAGTATTTTAATGGAGAGATGATGATATTTGCAACTTTAGTCTTGCCTCCT 474
Query 481 AACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGATAGACTT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 AACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGGTAGACTT 534
Query 541 GGAATGCACGCAATGAGTGGTGATAATCTCAAATCCATGGCTTCTTTGGATTTGCTTTCC 600
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 535 GGAATGCACGCAATGAGTGGAGATCATCTCAAATTCATGGCTTCTTTGGATTTGCTTTCC 594
Query 601 GGACAAGTCACAACCACAAAATCAGTTAACAGAAACATGTTGTTGGTAAAACAAATCCAT 660
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 595 GGACAAGTCACAACCACAAAATCAGTTAACAGAAACATGTTGTTGGTAAAGCGAATCCAT 654
Query 661 GCAATAGTGAATGCATTGAGCTGGGGGATTCTCATGCCCATCGGAGTTATGGCTGCAAGA 720
| |||||||||| || | || ||||| ||| ||||||| || ||||||||||||||||||
Sbjct 655 GGAATAGTGAATACAGTAAGTTGGGGAATTTTCATGCCTATTGGAGTTATGGCTGCAAGA 714
Query 721 TATATGAAGAATTACGAGGTATTAGATCCCACATGGTTCTATATACACGTTGTTTGTCAA 780
|||||||| || |||||||||||||| ||||||||||||||| ||||||| || ||||||
Sbjct 715 TATATGAAAAACTACGAGGTATTAGACCCCACATGGTTCTATGTACACGTAGTGTGTCAA 774
Query 781 ACCACGGGTTATTTT-TCCGGTTTGATCGGAGGATTAGGAACAGCAATCTACATGGCGAG 839
|||| ||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 775 ACCATGGGTTATTTCGTC-GGTTTGATCGGAGGATTAGGAACAACAATCTACATGGCGAG 833
Query 840 ACATACCGGGATGAGGACTACACTGCATACCGTGATAGGATTACTTCTGTTTGCTTTAGG 899
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 834 ACATACCGGGATGAGGACTACATTGCATACCGTGATAGGATTGCTTCTATTTGCTTTAGG 893
Query 900 GTTTTTGCAGATACTTTCGCTCAAAGCAAGACCGAACAAGGATCATAAATACAGAAAATA 959
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 894 GTTTTTGCAGATACTTGCGCTCAAAGCAAGACCGGACAAGGATCATAAATACAGAAAATA 953
Query 960 CTGGAACTGGTATCATCATACTATGGGATACATAGTGATTGTACTAAGCATATACAATAT 1019
||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||
Sbjct 954 TTGGAACTGGTATCATCACACGGTAGGATACATAGTGATTGTACTAAGCATCTACAATAT 1013
Query 1020 CTACAAAGGCTTGTCTATTTTACAACCCGGAAGCATCTGGAAAATCGCCTATACTACCAT 1079
||||||||||||||| |||||||||||||||||| |||||| || ||||| ||||||||
Sbjct 1014 CTACAAAGGCTTGTCAATTTTACAACCCGGAAGCGGCTGGAAGATTGCCTACACTACCAT 1073
Query 1080 AATCTGTTGCATTGCAGCGTTTGCGGTTGTGATGGAAATTTTACAGTTTAAGAAGAGATG 1139
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1074 AATCTGTTGCATTGCAGCGTTTGCCATTGTGATGGAAATTTTACAGTTTAAGAAGAGATG 1133
Query 1140 GGCTAGATTGTTCTT-CAAGAAATCCAAAGACGTAGAAGCTGATCAACCCACTGTTTCCG 1198
|||| ||||||| || ||||||| ||||| || ||||||||||||| | |||| ||||
Sbjct 1134 GGCTGGATTGTT-TTGCAAGAAAACCAAAAACCTAGAAGCTGATCATCAAACTGCCTCCG 1192
Query 1199 TTGATGTG 1206
||||||||
Sbjct 1193 TTGATGTG 1200
Score = 257 bits (139), Expect = 1e-67
Identities = 159/168 (95%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1205 TGATCGGAGAGACGGAAAAGGCGG-AGAGGAAAAAGGCGAGCGGCGGAATTGAAATTCAG 1263
|||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||
Sbjct 1251 TGATCGGAGAGACGGAAAAGGCGGAAG-GGAAAAA-GCGAGCGGCGGATTTGAAATTCAG 1308
Query 1264 ATTGAAAACTATAATATAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTATTTCTTAT 1323
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1309 ATTGAAAACTATAATTTAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTGTTTCTTAT 1368
Query 1324 CCACATACTTCTCCGCCGCTTCTAGCCTTTCATTCCTACCACCATCCG 1371
|||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1369 CCACATACTTCTTCGCCGCTTCTAGCCTTTCATCCCTACCACCCTCCG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5