BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59080.1
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486375 jgi|Araly1|486375|fgenesh2_kg.5__2367__AT3G59080.1 2789 0.0
Ahg935189 jgi|Araly1|935189|scaffold_403177.1 1053 0.0
> Ahg486375 jgi|Araly1|486375|fgenesh2_kg.5__2367__AT3G59080.1
Length=1978
Score = 2789 bits (1510), Expect = 0.0
Identities = 1763/1880 (94%), Gaps = 38/1880 (2%)
Strand=Plus/Plus
Query 165 ACTTTTCT-TTCCCGGCGACTCAAAGCTTAATTGTCGCCGGCGATTTTTTGTTCTCAAGC 223
|||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 117 ACTTTT-TATTCCCGGCGACTCGAAGCTTAATCGTCGCCGGCGATTTTTTGTTCTCAAGC 175
Query 224 A--T-TGATCCTAATGTTTTCCAAGTACAGTTTCATTCTTTGTCTTATTTTCTTCTTCGT 280
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATTTATTATCCTAATGTTTTCCAAGTACAGTTTCATTCTTTGTCTTATTTTCTTCTTCGT 235
Query 281 CACAGCATTTTCCGGCGACTCCAGAGCTCTTGCTGGAAACAATGAGCAGAAGAA---CAT 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 236 CACAGCATTTTCCGGCGACTCCAGAGCTCTTGCTGGAAACAATGAGCAGAAGAAGAACAT 295
Query 338 CTCTGGCTTTTCTGGGATTGACTTTCCAAATCCAATGCGTTTCGGTTCTGCTTCTTCTTC 397
||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct 296 CTCTGGCTTTTCTGGGATTGACTTTCCTAATCCGATGCGTTTCGGTTCTGTTTCTTCTTC 355
Query 398 CACAAGCAACGATTGCGGCTTCTCTTCCCCTGAGAAAGAACCCACCAAGGAACGGACCGG 457
| |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 356 CTCAAGCAACGATTGCGGCTTCTCTTCCTCTGAGAACGAACCAACCAAGGAACGGACCGG 415
Query 458 AGAAAACAAGACGGTGAAGTTTCACTTAAAGCGCCGGGAGACTACGACTACAGAGAAGGC 517
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 416 AGAAAACAAGACGGTGAAGTTTCACTTAAAGCGCCGAGAGTCTACGACTACAGAGAAGAC 475
Query 518 AACAACAAATTCAGTTCTTGAGCTTCAAATCCGAGATCTCACAAGAATTCAGACGCTTCA 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AACAACAAATTCAGTTCTTGAGCTTCAAATCCGAGATCTCACAAGAATTCAGACGCTTCA 535
Query 578 CAAAAGAGTTTTGGAGAAGAACAACCAAAACACTGTTTCGCAGAAGCAGAAGAAGAATGA 637
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 536 CAAAAGGGTTTTGGAGAAGAAGAACCAAAACACTGTTTCGCAGAAGCAGAAGAAGAA-GA 594
Query 638 -TAAAGAAGTTGTTACCACTACTCCGGTGGCTTCTTCCGTGGAGGAGCAGGCTGGTCAAT 696
||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 595 ATAAAGAAGTCGTTACCACT-C-C-GGTGGCTTCTTCCGTGGAGGAGCAGGCTGGTCAAT 651
Query 697 TGGTGGCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGCGAGTACTTCATGGACGTGT 756
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 652 TGGTGGCAACGCTTGAGTCTGGTATGACTCTTGGTTCTGGCGAGTACTTCATGGACGTGT 711
Query 757 TGGTTGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACTTAAACT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 712 TGGTTGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACCTAAACT 771
Query 817 GGATTCAATGCTTGCCTTGCTACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTA 876
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 772 GGATTCAATGCTTGCCTTGCCACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTA 831
Query 877 AAGCCTCTGCTTCTTACAAGAACATAACTTGCAATGACCAAAGATGCAACCTAGTCTCAT 936
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 832 CAGCCTCTGCTTCTTACAAGAACATAACTTGCAATGACCCAAGATGCAATCTAGTCTCAC 891
Query 937 CACCTGACCCTCCAATGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 996
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CACCTGACCCTCCAAAGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 951
Query 997 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTAGAGACTTTCACGGTTAACCTCA 1056
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 952 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTCGAGACTTTCACGGTTAATCTCA 1011
Query 1057 CGACAAATGGAGGGAGCTCGGAGTTGTATAATGTTGAAAATATGATGTTCGGTTGCGGTC 1116
| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1012 CTACAAGTGGAGGGAGCTCGGAGTTGTATAATGTCGAAAACATGATGTTCGGTTGTGGTC 1071
Query 1117 ATTGGAACCGAGGTCTCTTCCATGGTGCTGCAGGCTTGCTTGGTTTAGGAAGAGGCCCGC 1176
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1072 ATTGGAACAGAGGTCTCTTCCATGGTGCTGCAGGCTTGCTTGGGTTAGGAAGAGGCCCGC 1131
Query 1177 TTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCTTATTGCCTTGTCG 1236
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1132 TTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCATATTGCCTTGTTG 1191
Query 1237 ACAGAAACAGCGATACCAACGTTAGTAGCAAACTGATTTTCGGAGAAGACAAGGATTTGT 1296
| ||||| ||||||||||| |||||||||||| ||||||| || ||||||||||||||||
Sbjct 1192 ATAGAAATAGCGATACCAATGTTAGTAGCAAATTGATTTTTGGGGAAGACAAGGATTTGT 1251
Query 1297 TAAGTCACCCGAATCTGAACTTCACTTCTTTTGTCGCTGGGAAAGAAAACCTCGTCGACA 1356
| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1252 TGAGCCATCCGAATCTGAACTTCACTTCTTTTGTCGCTGGGAAAGAGAACCTCGTCGACA 1311
Query 1357 CATTTTACTACGTACAAATCAAATCCATTCTAGTCGCGGGAGAAGTTCTAAACATACCTG 1416
|||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 1312 CATTTTACTACGTACAGATCAAATCCATTATAGTCGCGGGAGAAGTACTAAAGATACCTG 1371
Query 1417 AAGAAACATGGAATATCTCATCAGATGGAGCTGGAGGGACGATCATTGATTCAGGTACAA 1476
||||||||||||||||||||||| ||||||||||||| || ||||| ||||| |||||||
Sbjct 1372 AAGAAACATGGAATATCTCATCAAATGGAGCTGGAGGTACAATCATCGATTCGGGTACAA 1431
Query 1477 CCTTAAGTTACTTCGCAGAACCTGCATATGAATTCATCAAGAACAAGATTGCTGAGAAAG 1536
|||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1432 CCTTAAGTTATTTCGCGGAACCTGCATATGAATTCATCAAGAACAAGATAGCAGAGAAAG 1491
Query 1537 CTAAAGGGAAGTATCCGGTCTATAGAGATTTTCCAATCCTAGATCCTTGCTTCAACGTCT 1596
| ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1492 CGAAAGGGAAGTACCCGGTTTATAGAGATTTCCCAATCCTAGATCCTTGTTTCAACGTCT 1551
Query 1597 CTGGCATTC-ATAACGTTCAGCTGCCAGAGCTTGGGATTGCTTTTGCAGATGGCGCTGTT 1655
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1552 CTGGCAT-CGATAACATTCAGCTGCCAGAGCTTGGGATTGCTTTTGCAGATGGCGCGGTT 1610
Query 1656 TGGAACTTCCCGACAGAGAATTCTTTCATATGGTTGAATGAGGATTTGGTTTGCTTGGCA 1715
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGGAACTTCCCAACAGAGAATTCTTTCATATGGTTGAATGAGGATTTGGTTTGCTTGGCA 1670
Query 1716 ATGCTAGGAACTCCCAAATCAGCATTTTCAATCATTGGAAACTACCAGCAGCAGAATTTT 1775
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1671 ATTCTTGGAACTCCCAAATCAGCCTTTTCAATCATTGGAAACTACCAGCAGCAGAATTTT 1730
Query 1776 CATATACTCTATGATACAAAGAGGTCTAGGCTCGGGTATGCACCTACAAAGTGTGCAGAT 1835
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1731 CATATACTATATGATACAAAGAGGTCCAGGCTCGGGTATGCACCTACAAAGTGTGCTGAT 1790
Query 1836 ATATAATCTTTCTTGTCGATT-T-----TT--AAGTCCATCAAAGCAACTGAACACACAA 1887
|||||| |||||||||| ||| | || ||||||||||||||||||| ||||||||
Sbjct 1791 ATATAACCTTTCTTGTCAATTATACAGATTTTAAGTCCATCAAAGCAACTGTACACACAA 1850
Query 1888 TAAGAACAGATTCAttttttt--CCCTTTAGATTTTTTCATTCTTTAGGATATTCCTTCA 1945
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1851 TAAGAACAGATTCATTTTTTTTTCCCTTTAGATTTTTTCATTCTTTAGGATATTCCTTTA 1910
Query 1946 AACATGTAATGTATTTGCTGTAGAACAAAGATCATACCAAACTAATGTACTTATTCAAA- 2004
|||||||| | | | | | | ||||||||||||||||||||||||||||||||
Sbjct 1911 AACATGTA-T-T----G----A-A-CTAAGATCATACCAAACTAATGTACTTATTCAAAC 1958
Query 2005 TTCATTTCTGAATACAAAGT 2024
||||||||| ||||||||||
Sbjct 1959 TTCATTTCTAAATACAAAGT 1978
> Ahg935189 jgi|Araly1|935189|scaffold_403177.1
Length=1630
Score = 1053 bits (570), Expect = 0.0
Identities = 975/1166 (84%), Gaps = 46/1166 (4%)
Strand=Plus/Plus
Query 702 GCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGCGAGTACTTCATGGACGTG-TTGGT 760
||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||
Sbjct 465 GCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGTGAATACTTCATGGACGTGCTT-GT 523
Query 761 TGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACTTAAACTGGAT 820
|| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 524 GGGCACACCACCAAAACACTTCTCATTGATTCTTGACACAGGGAGTGACTTAAACTGGCT 583
Query 821 TCAATG-CTTGCCTTGCTACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTAAAG 879
||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 584 CCAATGCCTT-CCTTGCTACGACTGTTTCCACCAAAACGAAGCGTTTTATGACCCGAAAA 642
Query 880 CCTCTGCTTC-TTACAAGAACATAACTTGCAATGACCAAAGATGCAACCT-AGTCTCATC 937
| || ||||| || |||||||||||| |||||||||| ||||||| ||| | |||||||
Sbjct 643 CGTCCGCTTCATT-CAAGAACATAACATGCAATGACCCTAGATGCAGCCTCA-TCTCATC 700
Query 938 ACCTGACCCTCCAATGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGTA 997
||| || |||||| | | |||||||||||||||||||| |||||||| | |||||||||
Sbjct 701 ACCCGAGCCTCCAGTACAGTGCAAATCAGATAACCAATCGTGCCCTTATTTCTACTGGTA 760
Query 998 TGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTAGAGACTTTCACGGTTAACCTCAC 1057
||| || || || ||||| || |||||||| || || ||||| ||||| ||||| |||||
Sbjct 761 TGGAGACAGATCGAACACAACTGGAGATTTCGCGGTTGAGACCTTCACCGTTAATCTCAC 820
Query 1058 GA-CA--AATGGAGGGAGCTCGGAGTTGTATAATGTTGAAAATATGATGTTCGGTTGCGG 1114
|| || | ||| | || || || |||||| || |||||||||||||| || || ||
Sbjct 821 GACCACTGAGGGAAGAAGTTC--AG-AGTATAAGGTGGAAAATATGATGTTTGGGTGTGG 877
Query 1115 TCATTGGAACCGAGGTCTCTTCCA-TGGTGCTGCAGGCT-TGCTTGGTTTAGGAAGAGGC 1172
||||||||||||||||||||| || ||||||| |||| | ||||||| ||||| |||||
Sbjct 878 TCATTGGAACCGAGGTCTCTT-CAGTGGTGCTTCAGG-TCTGCTTGGGTTAGGGAGAGGA 935
Query 1173 CCGCTTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCTTATTGCCTT 1232
|| ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| |||
Sbjct 936 CCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGGCCATTCCTTTTCCTATTGTCTT 995
Query 1233 GTCGACAGAAACAGCGATACCAACGTTAGTAGCAAACTGAT-TTTCGGAGAAGACAAGGA 1291
||||| ||||||||||| ||||| || || ||||| |||| ||| ||||||||||| ||
Sbjct 996 GTCGATAGAAACAGCGACACCAATGTAAGCAGCAAGTTGATATTT-GGAGAAGACAAAGA 1054
Query 1292 TTTG-TTAAGTCACCCGAATCTGAACTTCACTTCTTTTGTCG--CTGGGAAAGA-AAACC 1347
|||| | || ||| | ||||||||||||||||||||||| | | ||||| || || |
Sbjct 1055 TTTGCTGAA-CCACACAAATCTGAACTTCACTTCTTTTGT-GAAC-GGGAAGGAGAATTC 1111
Query 1348 TCGTCGACACATTTTACTACGTACAAATCAAATCCATTCTAGTC-GCGGGAGAAGTTCTA 1406
| || || || |||||||| |||| |||||||||||||||||| || || |||| |||
Sbjct 1112 T-GTGGAGACGTTTTACTATATACAGATCAAATCCATTCTAGTCGGC-GGCGAAGCTCTG 1169
Query 1407 AACATACCTGAAGAAACATGGAATATCTCATCAGATGGAGCTGGAGGGACGATCATTGAT 1466
||||||||||||||||||||||||||||| ||||||| ||||| || || |||||||||
Sbjct 1170 GACATACCTGAAGAAACATGGAATATCTCACCAGATGGTGCTGGTGGAACCATCATTGAT 1229
Query 1467 TCAGGTACAACCTTAAGTTACTTCGCAGAACCTGCATATGA-ATTCATCAAGAACAAGAT 1525
|| || ||||||||||| || |||||||| ||||||||||| || ||| || |||||| |
Sbjct 1230 TCCGGGACAACCTTAAGCTATTTCGCAGACCCTGCATATGAGAT-CATAAAAAACAAGTT 1288
Query 1526 TGCTGAGAAAGCT-AAAGGGAAGTATCC-GGTCTATAGAGATTTTCCAATCCTAGATCCT 1583
||| |||||| | |||| ||| || || ||| | ||||||||| || |||| ||||||
Sbjct 1289 TGCAGAGAAAA-TGAAAGAGAACTA-CCTGGTGTTTAGAGATTTCCCGGTCCTTGATCCT 1346
Query 1584 TGCTTCAACGTCTCTGGCATTCAT-A-A-CGT--TC-AGCTGCCAGAGCTTGGGATTGCT 1637
|||||||| || |||||||| | | | | || | ||||| ||||| ||||||||
Sbjct 1347 TGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCATCTGCCGGAGCTCGGGATTGCA 1406
Query 1638 TTTGCAGATGGCGCTGTTTGGAACTTCCC-GACAGAGAATTCTTTCATATGGTTGAATGA 1696
|||||||| ||||| |||||||| ||||| | | ||||| || ||||| ||||||| |||
Sbjct 1407 TTTGCAGACGGCGCAGTTTGGAATTTCCCTG-CTGAGAACTCCTTCATTTGGTTGAGTGA 1465
Query 1697 GGATTTGGTTTGCTTGGCAATGCTAGGAACTCCCAAATC-AGCATTTTCAATCATTGGAA 1755
||||||||||||||||||||| ||||||||||| ||||| | |||| || ||||| ||||
Sbjct 1466 GGATTTGGTTTGCTTGGCAATTCTAGGAACTCCTAAATCTA-CATTCTCGATCATCGGAA 1524
Query 1756 ACTACCAGCAGCAGAATTTTCATATACTCTATGATACAAAGAGGTCTAGGCTCGGGTATG 1815
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 1525 ACTACCAACAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAGGCTAGGGTTTA 1584
Query 1816 CACCTACAAAGTGTGCAGATATATAA 1841
|||| ||||||||||| || ||||||
Sbjct 1585 CACCCACAAAGTGTGCGGACATATAA 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76789933920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5