BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59080.1 Length=2042 Score E Sequences producing significant alignments: (Bits) Value Ahg486375 jgi|Araly1|486375|fgenesh2_kg.5__2367__AT3G59080.1 2789 0.0 Ahg935189 jgi|Araly1|935189|scaffold_403177.1 1053 0.0 > Ahg486375 jgi|Araly1|486375|fgenesh2_kg.5__2367__AT3G59080.1 Length=1978 Score = 2789 bits (1510), Expect = 0.0 Identities = 1763/1880 (94%), Gaps = 38/1880 (2%) Strand=Plus/Plus Query 165 ACTTTTCT-TTCCCGGCGACTCAAAGCTTAATTGTCGCCGGCGATTTTTTGTTCTCAAGC 223 |||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 117 ACTTTT-TATTCCCGGCGACTCGAAGCTTAATCGTCGCCGGCGATTTTTTGTTCTCAAGC 175 Query 224 A--T-TGATCCTAATGTTTTCCAAGTACAGTTTCATTCTTTGTCTTATTTTCTTCTTCGT 280 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 ATTTATTATCCTAATGTTTTCCAAGTACAGTTTCATTCTTTGTCTTATTTTCTTCTTCGT 235 Query 281 CACAGCATTTTCCGGCGACTCCAGAGCTCTTGCTGGAAACAATGAGCAGAAGAA---CAT 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 236 CACAGCATTTTCCGGCGACTCCAGAGCTCTTGCTGGAAACAATGAGCAGAAGAAGAACAT 295 Query 338 CTCTGGCTTTTCTGGGATTGACTTTCCAAATCCAATGCGTTTCGGTTCTGCTTCTTCTTC 397 ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct 296 CTCTGGCTTTTCTGGGATTGACTTTCCTAATCCGATGCGTTTCGGTTCTGTTTCTTCTTC 355 Query 398 CACAAGCAACGATTGCGGCTTCTCTTCCCCTGAGAAAGAACCCACCAAGGAACGGACCGG 457 | |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| Sbjct 356 CTCAAGCAACGATTGCGGCTTCTCTTCCTCTGAGAACGAACCAACCAAGGAACGGACCGG 415 Query 458 AGAAAACAAGACGGTGAAGTTTCACTTAAAGCGCCGGGAGACTACGACTACAGAGAAGGC 517 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | Sbjct 416 AGAAAACAAGACGGTGAAGTTTCACTTAAAGCGCCGAGAGTCTACGACTACAGAGAAGAC 475 Query 518 AACAACAAATTCAGTTCTTGAGCTTCAAATCCGAGATCTCACAAGAATTCAGACGCTTCA 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 AACAACAAATTCAGTTCTTGAGCTTCAAATCCGAGATCTCACAAGAATTCAGACGCTTCA 535 Query 578 CAAAAGAGTTTTGGAGAAGAACAACCAAAACACTGTTTCGCAGAAGCAGAAGAAGAATGA 637 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 536 CAAAAGGGTTTTGGAGAAGAAGAACCAAAACACTGTTTCGCAGAAGCAGAAGAAGAA-GA 594 Query 638 -TAAAGAAGTTGTTACCACTACTCCGGTGGCTTCTTCCGTGGAGGAGCAGGCTGGTCAAT 696 ||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 595 ATAAAGAAGTCGTTACCACT-C-C-GGTGGCTTCTTCCGTGGAGGAGCAGGCTGGTCAAT 651 Query 697 TGGTGGCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGCGAGTACTTCATGGACGTGT 756 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 652 TGGTGGCAACGCTTGAGTCTGGTATGACTCTTGGTTCTGGCGAGTACTTCATGGACGTGT 711 Query 757 TGGTTGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACTTAAACT 816 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 712 TGGTTGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACCTAAACT 771 Query 817 GGATTCAATGCTTGCCTTGCTACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTA 876 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 772 GGATTCAATGCTTGCCTTGCCACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTA 831 Query 877 AAGCCTCTGCTTCTTACAAGAACATAACTTGCAATGACCAAAGATGCAACCTAGTCTCAT 936 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 832 CAGCCTCTGCTTCTTACAAGAACATAACTTGCAATGACCCAAGATGCAATCTAGTCTCAC 891 Query 937 CACCTGACCCTCCAATGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 996 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 CACCTGACCCTCCAAAGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 951 Query 997 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTAGAGACTTTCACGGTTAACCTCA 1056 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 952 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTCGAGACTTTCACGGTTAATCTCA 1011 Query 1057 CGACAAATGGAGGGAGCTCGGAGTTGTATAATGTTGAAAATATGATGTTCGGTTGCGGTC 1116 | |||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 1012 CTACAAGTGGAGGGAGCTCGGAGTTGTATAATGTCGAAAACATGATGTTCGGTTGTGGTC 1071 Query 1117 ATTGGAACCGAGGTCTCTTCCATGGTGCTGCAGGCTTGCTTGGTTTAGGAAGAGGCCCGC 1176 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1072 ATTGGAACAGAGGTCTCTTCCATGGTGCTGCAGGCTTGCTTGGGTTAGGAAGAGGCCCGC 1131 Query 1177 TTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCTTATTGCCTTGTCG 1236 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1132 TTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCATATTGCCTTGTTG 1191 Query 1237 ACAGAAACAGCGATACCAACGTTAGTAGCAAACTGATTTTCGGAGAAGACAAGGATTTGT 1296 | ||||| ||||||||||| |||||||||||| ||||||| || |||||||||||||||| Sbjct 1192 ATAGAAATAGCGATACCAATGTTAGTAGCAAATTGATTTTTGGGGAAGACAAGGATTTGT 1251 Query 1297 TAAGTCACCCGAATCTGAACTTCACTTCTTTTGTCGCTGGGAAAGAAAACCTCGTCGACA 1356 | || || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1252 TGAGCCATCCGAATCTGAACTTCACTTCTTTTGTCGCTGGGAAAGAGAACCTCGTCGACA 1311 Query 1357 CATTTTACTACGTACAAATCAAATCCATTCTAGTCGCGGGAGAAGTTCTAAACATACCTG 1416 |||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 1312 CATTTTACTACGTACAGATCAAATCCATTATAGTCGCGGGAGAAGTACTAAAGATACCTG 1371 Query 1417 AAGAAACATGGAATATCTCATCAGATGGAGCTGGAGGGACGATCATTGATTCAGGTACAA 1476 ||||||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||| Sbjct 1372 AAGAAACATGGAATATCTCATCAAATGGAGCTGGAGGTACAATCATCGATTCGGGTACAA 1431 Query 1477 CCTTAAGTTACTTCGCAGAACCTGCATATGAATTCATCAAGAACAAGATTGCTGAGAAAG 1536 |||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct 1432 CCTTAAGTTATTTCGCGGAACCTGCATATGAATTCATCAAGAACAAGATAGCAGAGAAAG 1491 Query 1537 CTAAAGGGAAGTATCCGGTCTATAGAGATTTTCCAATCCTAGATCCTTGCTTCAACGTCT 1596 | ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||| Sbjct 1492 CGAAAGGGAAGTACCCGGTTTATAGAGATTTCCCAATCCTAGATCCTTGTTTCAACGTCT 1551 Query 1597 CTGGCATTC-ATAACGTTCAGCTGCCAGAGCTTGGGATTGCTTTTGCAGATGGCGCTGTT 1655 ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1552 CTGGCAT-CGATAACATTCAGCTGCCAGAGCTTGGGATTGCTTTTGCAGATGGCGCGGTT 1610 Query 1656 TGGAACTTCCCGACAGAGAATTCTTTCATATGGTTGAATGAGGATTTGGTTTGCTTGGCA 1715 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 TGGAACTTCCCAACAGAGAATTCTTTCATATGGTTGAATGAGGATTTGGTTTGCTTGGCA 1670 Query 1716 ATGCTAGGAACTCCCAAATCAGCATTTTCAATCATTGGAAACTACCAGCAGCAGAATTTT 1775 || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1671 ATTCTTGGAACTCCCAAATCAGCCTTTTCAATCATTGGAAACTACCAGCAGCAGAATTTT 1730 Query 1776 CATATACTCTATGATACAAAGAGGTCTAGGCTCGGGTATGCACCTACAAAGTGTGCAGAT 1835 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1731 CATATACTATATGATACAAAGAGGTCCAGGCTCGGGTATGCACCTACAAAGTGTGCTGAT 1790 Query 1836 ATATAATCTTTCTTGTCGATT-T-----TT--AAGTCCATCAAAGCAACTGAACACACAA 1887 |||||| |||||||||| ||| | || ||||||||||||||||||| |||||||| Sbjct 1791 ATATAACCTTTCTTGTCAATTATACAGATTTTAAGTCCATCAAAGCAACTGTACACACAA 1850 Query 1888 TAAGAACAGATTCAttttttt--CCCTTTAGATTTTTTCATTCTTTAGGATATTCCTTCA 1945 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1851 TAAGAACAGATTCATTTTTTTTTCCCTTTAGATTTTTTCATTCTTTAGGATATTCCTTTA 1910 Query 1946 AACATGTAATGTATTTGCTGTAGAACAAAGATCATACCAAACTAATGTACTTATTCAAA- 2004 |||||||| | | | | | | |||||||||||||||||||||||||||||||| Sbjct 1911 AACATGTA-T-T----G----A-A-CTAAGATCATACCAAACTAATGTACTTATTCAAAC 1958 Query 2005 TTCATTTCTGAATACAAAGT 2024 ||||||||| |||||||||| Sbjct 1959 TTCATTTCTAAATACAAAGT 1978 > Ahg935189 jgi|Araly1|935189|scaffold_403177.1 Length=1630 Score = 1053 bits (570), Expect = 0.0 Identities = 975/1166 (84%), Gaps = 46/1166 (4%) Strand=Plus/Plus Query 702 GCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGCGAGTACTTCATGGACGTG-TTGGT 760 ||||||||||||||||||||||||||||||||||| || ||||||||||||||| || || Sbjct 465 GCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGTGAATACTTCATGGACGTGCTT-GT 523 Query 761 TGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACTTAAACTGGAT 820 || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| | Sbjct 524 GGGCACACCACCAAAACACTTCTCATTGATTCTTGACACAGGGAGTGACTTAAACTGGCT 583 Query 821 TCAATG-CTTGCCTTGCTACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTAAAG 879 ||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| ||| Sbjct 584 CCAATGCCTT-CCTTGCTACGACTGTTTCCACCAAAACGAAGCGTTTTATGACCCGAAAA 642 Query 880 CCTCTGCTTC-TTACAAGAACATAACTTGCAATGACCAAAGATGCAACCT-AGTCTCATC 937 | || ||||| || |||||||||||| |||||||||| ||||||| ||| | ||||||| Sbjct 643 CGTCCGCTTCATT-CAAGAACATAACATGCAATGACCCTAGATGCAGCCTCA-TCTCATC 700 Query 938 ACCTGACCCTCCAATGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGTA 997 ||| || |||||| | | |||||||||||||||||||| |||||||| | ||||||||| Sbjct 701 ACCCGAGCCTCCAGTACAGTGCAAATCAGATAACCAATCGTGCCCTTATTTCTACTGGTA 760 Query 998 TGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTAGAGACTTTCACGGTTAACCTCAC 1057 ||| || || || ||||| || |||||||| || || ||||| ||||| ||||| ||||| Sbjct 761 TGGAGACAGATCGAACACAACTGGAGATTTCGCGGTTGAGACCTTCACCGTTAATCTCAC 820 Query 1058 GA-CA--AATGGAGGGAGCTCGGAGTTGTATAATGTTGAAAATATGATGTTCGGTTGCGG 1114 || || | ||| | || || || |||||| || |||||||||||||| || || || Sbjct 821 GACCACTGAGGGAAGAAGTTC--AG-AGTATAAGGTGGAAAATATGATGTTTGGGTGTGG 877 Query 1115 TCATTGGAACCGAGGTCTCTTCCA-TGGTGCTGCAGGCT-TGCTTGGTTTAGGAAGAGGC 1172 ||||||||||||||||||||| || ||||||| |||| | ||||||| ||||| ||||| Sbjct 878 TCATTGGAACCGAGGTCTCTT-CAGTGGTGCTTCAGG-TCTGCTTGGGTTAGGGAGAGGA 935 Query 1173 CCGCTTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCTTATTGCCTT 1232 || ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| ||| Sbjct 936 CCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGGCCATTCCTTTTCCTATTGTCTT 995 Query 1233 GTCGACAGAAACAGCGATACCAACGTTAGTAGCAAACTGAT-TTTCGGAGAAGACAAGGA 1291 ||||| ||||||||||| ||||| || || ||||| |||| ||| ||||||||||| || Sbjct 996 GTCGATAGAAACAGCGACACCAATGTAAGCAGCAAGTTGATATTT-GGAGAAGACAAAGA 1054 Query 1292 TTTG-TTAAGTCACCCGAATCTGAACTTCACTTCTTTTGTCG--CTGGGAAAGA-AAACC 1347 |||| | || ||| | ||||||||||||||||||||||| | | ||||| || || | Sbjct 1055 TTTGCTGAA-CCACACAAATCTGAACTTCACTTCTTTTGT-GAAC-GGGAAGGAGAATTC 1111 Query 1348 TCGTCGACACATTTTACTACGTACAAATCAAATCCATTCTAGTC-GCGGGAGAAGTTCTA 1406 | || || || |||||||| |||| |||||||||||||||||| || || |||| ||| Sbjct 1112 T-GTGGAGACGTTTTACTATATACAGATCAAATCCATTCTAGTCGGC-GGCGAAGCTCTG 1169 Query 1407 AACATACCTGAAGAAACATGGAATATCTCATCAGATGGAGCTGGAGGGACGATCATTGAT 1466 ||||||||||||||||||||||||||||| ||||||| ||||| || || ||||||||| Sbjct 1170 GACATACCTGAAGAAACATGGAATATCTCACCAGATGGTGCTGGTGGAACCATCATTGAT 1229 Query 1467 TCAGGTACAACCTTAAGTTACTTCGCAGAACCTGCATATGA-ATTCATCAAGAACAAGAT 1525 || || ||||||||||| || |||||||| ||||||||||| || ||| || |||||| | Sbjct 1230 TCCGGGACAACCTTAAGCTATTTCGCAGACCCTGCATATGAGAT-CATAAAAAACAAGTT 1288 Query 1526 TGCTGAGAAAGCT-AAAGGGAAGTATCC-GGTCTATAGAGATTTTCCAATCCTAGATCCT 1583 ||| |||||| | |||| ||| || || ||| | ||||||||| || |||| |||||| Sbjct 1289 TGCAGAGAAAA-TGAAAGAGAACTA-CCTGGTGTTTAGAGATTTCCCGGTCCTTGATCCT 1346 Query 1584 TGCTTCAACGTCTCTGGCATTCAT-A-A-CGT--TC-AGCTGCCAGAGCTTGGGATTGCT 1637 |||||||| || |||||||| | | | | || | ||||| ||||| |||||||| Sbjct 1347 TGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCATCTGCCGGAGCTCGGGATTGCA 1406 Query 1638 TTTGCAGATGGCGCTGTTTGGAACTTCCC-GACAGAGAATTCTTTCATATGGTTGAATGA 1696 |||||||| ||||| |||||||| ||||| | | ||||| || ||||| ||||||| ||| Sbjct 1407 TTTGCAGACGGCGCAGTTTGGAATTTCCCTG-CTGAGAACTCCTTCATTTGGTTGAGTGA 1465 Query 1697 GGATTTGGTTTGCTTGGCAATGCTAGGAACTCCCAAATC-AGCATTTTCAATCATTGGAA 1755 ||||||||||||||||||||| ||||||||||| ||||| | |||| || ||||| |||| Sbjct 1466 GGATTTGGTTTGCTTGGCAATTCTAGGAACTCCTAAATCTA-CATTCTCGATCATCGGAA 1524 Query 1756 ACTACCAGCAGCAGAATTTTCATATACTCTATGATACAAAGAGGTCTAGGCTCGGGTATG 1815 ||||||| || |||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct 1525 ACTACCAACAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAGGCTAGGGTTTA 1584 Query 1816 CACCTACAAAGTGTGCAGATATATAA 1841 |||| ||||||||||| || |||||| Sbjct 1585 CACCCACAAAGTGTGCGGACATATAA 1610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76789933920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5