BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59090.2
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486377 jgi|Araly1|486377|fgenesh2_kg.5__2369__AT3G59090.1 1868 0.0
> Ahg486377 jgi|Araly1|486377|fgenesh2_kg.5__2369__AT3G59090.1
Length=1585
Score = 1868 bits (1011), Expect = 0.0
Identities = 1155/1220 (95%), Gaps = 28/1220 (2%)
Strand=Plus/Plus
Query 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60
Query 61 TCCTCTCTCTCTTACAAACCTAAAATCTAGGCATTCGATCTCTTGGGGAGGATCGAGAAG 120
| | |||||||||||||||||||||||| ||||||||||||| | | || || |||
Sbjct 61 T-C-CTCTCTCTTACAAACCTAAAATCTCGGCATTCGATCTC-T---G-GG---GA-AAG 109
Query 121 AAAAGAGCGGATTCACGATGAAGATC---TTAGCGACTCTTTTCGAATCAACCAAGGATA 177
||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||
Sbjct 110 ---AGA--GGATTCACGATGACGATCTTATTAGCGACGCTTTTCGAATCAACCAAGGATA 164
Query 178 AATGCTATGCTCCTAGCTTCATCGCCGTCAATCTCTGTTTGGCTTTTATCGATGCCGCTC 237
|||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 165 AATGCTATGCCCCAAGCTTCATCGCCGTCAATCTCTCTCTGGCTTTTATCGATGCCGCTC 224
Query 238 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 284
Query 298 GGACTCGGCAAAAAGTACTTCATCTTATGATTGCTTCTTCAAACACTGGTTCTGTTATTT 357
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 285 GGACTCGGCAAAAAGTACTTCATCTTATGATTGGTTCTTCAAACACTGGTTCTGTCGTTT 344
Query 358 ATTTCGTGGCTGCGGTTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 417
|||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ATTTTGTTGCTGCGATTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 404
Query 418 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 464
Query 478 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGgatgatgatgatgatgaAG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGGATGATGATGATGATGAAG 524
Query 538 AAAATAGCATCCAACAAGTGTTGCTTGAAAAAAGCAAGAGCAAGCCAGGTTCTTCGAATG 597
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||
Sbjct 525 AAAATAGCATCCAACAAGTTTTGCTTGAAAAAAGCAACACCAAGCCAGGTTCTTCAAATG 584
Query 598 CAAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGTATTCATGTTGGAACCCGGCAGAAGT 657
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 585 CTAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGGATTCATGTTGGAACCCGTCAGAAGT 644
Query 658 TTGTTGTTGCGGCAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 717
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTGTTGTTGCGGTAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 704
Query 718 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 764
Query 778 TTTTTGCTGCAATAATCCTAATCACTGGAGGAGGAATCTGCTTCTATGGCCTGCGTCTGC 837
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 765 TTTTTGCTGCAATAATCCTAATCACGGGAGGAGGAATATGCTTCTATGGCCTGCGTCTGC 824
Query 838 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCATCAGAGATGCGAAAGGTATCGG 897
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 825 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCAGCAGAGATGCGTAAGGTATCTG 884
Query 898 GTCTAGCAGGAGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 957
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GTTTAGCAGGCGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 944
Query 958 ACATTCCACTCTTTTATCATTGGAACCCAAGCAAATTACACGGCATCAAAGCATTGGTTC 1017
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 945 ACATTCCACTCTTCTATCATTGGAACCCAAGCAAATTACACGGCGTCAAAGCATTGGTTC 1004
Query 1018 TTCTGATCATATACTATTTCATAGGTTCCACCGTCCCATTGGCTTTCGTTTTATGGGTTT 1077
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1005 TTCTGATCATATACTATTTCATAGGTTCCACTGTACCATTGGCTTTCGTTTTATGGGTTT 1064
Query 1078 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGGCAAGAAGACACCAGAAGGATTACTT 1137
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1065 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGACAAGAAGACACCAGAAGGATTACTT 1124
Query 1138 ATGTCAACTATGAAACTGTTCCAAGGCAACCTCAAGGTCCTCAACAAGACTGGGCCTCCG 1197
|||||||||||||||||||| |||||||||||| | | || ||||||||||||
Sbjct 1125 ATGTCAACTATGAAACTGTTGCAAGGCAACCTC-----C---A-CAGGACTGGGCCTCCA 1175
Query 1198 CCACAGTGTCGAAAAATCAG 1217
| ||||||||||||||||||
Sbjct 1176 CTACAGTGTCGAAAAATCAG 1195
Score = 387 bits (209), Expect = 2e-106
Identities = 283/315 (90%), Gaps = 19/315 (6%)
Strand=Plus/Plus
Query 1216 AGTTACCGGGAAAAAGCCTCGTGGGATTGCAGAATGGTTCTTAGGCCCAATGTGGTGTGT 1275
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 1277 AGTTACCGGGAAAAAGCCTCGTTGGATTGCGGAATGGTTGTTAGGCCCAATGTGGTGTGT 1336
Query 1276 TGTGGTGGAGTGAATGAAAGTGGAAACAAG--CTCGTTTTCTTCTCTCTGA-GTCGCCTT 1332
|||| |||||||||||||||||| |||||| ||||||||||||||||| | ||||||||
Sbjct 1337 TGTGCTGGAGTGAATGAAAGTGGTAACAAGCTCTCGTTTTCTTCTCTCT-ATGTCGCCTT 1395
Query 1333 GGAATAC-AAAAATTTGTTTATAAGATAGAAATGGAGGTTTGAATCTGAGAAAGCTGTCT 1391
|||| || |||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 1396 GGAAGACAAAAAATTTGTTTATAAGATAGAAAGGGAGGTTTGAATCTAAGAAAGC--TCT 1453
Query 1392 GTAAATATTAACTTTTGATTGCAATTTATAGTTT-AG---CATCATGTGTTGGGGGGACT 1447
||||||||||||||||||||||| ||| |||||| || ||||||||||||| |||
Sbjct 1454 GTAAATATTAACTTTTGATTGCAGTTTTTAGTTTTAGGTGCATCATGTGTTGGA---ACT 1510
Query 1448 TGTGGATGG-ATATAAAATGTGTTCCAAGGAAGA---TATAA-TTTTGTCTTCCTTTCTA 1502
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1511 TGTGGATGGGATATAAAATGTGTTGTAAGGAAGAAGATATAAATTTTGTCTTCCTTTCTA 1570
Query 1503 AACAGCGTCGTTTAA 1517
|||||||||||||||
Sbjct 1571 AACAGCGTCGTTTAA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5