BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59110.1
Length=2417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486380 jgi|Araly1|486380|fgenesh2_kg.5__2372__AT3G59110.1 3526 0.0
Ahg902301 jgi|Araly1|902301|Al_scaffold_0004_2951 854 0.0
Ahg470784 jgi|Araly1|470784|fgenesh2_kg.1__738__AT1G07570.2 62.1 2e-08
> Ahg486380 jgi|Araly1|486380|fgenesh2_kg.5__2372__AT3G59110.1
Length=2397
Score = 3526 bits (1909), Expect = 0.0
Identities = 2271/2437 (93%), Gaps = 60/2437 (2%)
Strand=Plus/Plus
Query 1 TGTCAAAGTTCACCATCTTTGCTTTCCCTTCACTGctctctctctttc----tctc-tct 55
|||||||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 1 TGTCAAAGTTCACCATCTTTGCTTTCCCTTCACTGCTCTCTCTCTTTCTGTATTTCTTTT 60
Query 56 TTGTTGATTTTGTTTTCCTCAAATTGCAAATCAAAGCTTTCTTTCCAGCTTTAGAACACA 115
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TTGTTGATTTTG-TTTCCTCAAATTGCAAATCAAAGCTTTCTTTCCAGCTTTAGGACACA 119
Query 116 CTCTCACCAACAATCTCACCCAACtttttttCCTTCTTTTAACTCCTCACTAATTCCTAA 175
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 CTCTCACCAACAATCTCACCCAAC-TTTTTTCCCTCTTTTAACTCCTCACTAATTCCTAA 178
Query 176 TCCCACAAACCCTAAACTCTATCTCTTTAATCCCTTCCTTACATACATTA-TTC-A-GTA 232
||||||||||||||| |||| |||||||||| |||||||||||||||||| ||| | ||
Sbjct 179 TCCCACAAACCCTAATCTCTCTCTCTTTAAT-CCTTCCTTACATACATTATTTCAATATA 237
Query 233 GTTGAGTAAAGTTTCAATCTTTCTTCTGATTCCTTGTTGGAATTACCTAAATTTTCTGGG 292
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 238 GTTGAGTAAAGTTTCTATCTTTCTTCTGATTCCTTG-TGGAATTACCTAAATTTTCT--G 294
Query 293 TTTATTTTGGTGGGCTCGTCGAGAGATACTTCAATTGCAATTCATCGTTAAGCATATCTA 352
|||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 295 --------GGTGGGCTCGTCGAGAGAAACTTCAATTGCAATTCATCGCTAAGCATATCTA 346
Query 353 TGCTAATTGCGTTCTCTTCTTTATTTCACTTTCTCTTTGGTTTGCTTCAATATCAAAGCA 412
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 347 TGCTAATTGCGTTCTCTTCTTTATTTCACTTTCTCTTTGGTTTGCTTCAAAATCAAAGAA 406
Query 413 AAGAGGGACCTTTTCGCTTTGCGTTCTTCTCTTCTAATCGAAAAGACAAGAGCTT-AGTC 471
||| |||||| |||| |||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 407 AAGGGGGACC-TTTCTCTTTGCTTTCTTCTCTTCTAATCGAAAAGGCAAGAGCTTAAGTC 465
Query 472 ACCACATT-CTAAGGTGGGAATTGTGAAGTTGTGAGCAAAAGGAACCAAAAATGTCATCT 530
| || || || ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 466 A-CATTTTACT-AGGTGGGGTTTGTGAAGTTGTGAGCAAAAGGAACCAAAGATGTCATCT 523
Query 531 GAGAGTTCTCTGAGTGCTGACATGTCGAAGAAGGTCTCATTTTTAGGTTTGAAGGGTATG 590
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 524 GAGAGTTCTTTGAGTGCTGACATGTCCAAGAAGGTCTCATTTTTAGGTTTGAAGGGTATG 583
Query 591 AAACTGTGGGTACTGATTTGTTTAGTAGTTGGCACATTTGTAGTTTTGGTTTTCTGTATA 650
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 584 AAACTGTGGGTTTTGATTTGTTTAGTAGTTGGCACATTTGTAGTTTTGGTTCTCTGCATA 643
Query 651 TTATCTCTATGGATTGCATTCCGCCGGAAATCCCGGAGATCATCTCACAAGCTGTTACCC 710
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 644 TTATCTCTATGGATTGCATTCCGCCGTAAATCCCGGAGATCATCTCACAAGCTGTTACCC 703
Query 711 TTCAGTCAAATACCACGCGTGGCGAAAGATATCAGGGTTGATGATAGAGTTGGGTTTCAA 770
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TTCAGTCAAATACCACGTTTGGCGAAAGATATCAGGGTTGATGATAGAGTTGGGTTTCAA 763
Query 771 AATCATAATGAAAATTTATCTATCACAAATGCTGATAAATCTAGTGACAGAAACTCTGGG 830
|||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||
Sbjct 764 GATCATAATGAAAATTTATGTATCACCAATGCTGATAAATCTAGCGACAGAAACTC-GGG 822
Query 831 -AAGATGATGTCTTACTTGGGAAGAACGAAGTCTAGTGATAATGATAGTATAAGTCAATG 889
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AAAGATGATGTCTTTCTTGGGAAGAACGAAGTCTAGTGATAATGATAGTATAAGTCAATG 882
Query 890 TAGCTCTGTGCATCATCATGAGAGAGCTTGTAGTTCTCACTCTGGTGAAGATGGAAGCTT 949
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 883 TAGCTCTGTGCATCATCATGAGAGAGCTTGTAGTTCTCACTCCGGTGAAGATGGAAGCTT 942
Query 950 TGGAGCTGCTTGGAGACAAAATTCCCTATCACAGGGCGGGCTAGTAACAGCATCTCCTTT 1009
|||| | |||||||| ||| ||||||||| |||||||| || |||||||||||||||||
Sbjct 943 TGGAACCGCTTGGAGGCAAGCTTCCCTATCGCAGGGCGGACTTGTAACAGCATCTCCTTT 1002
Query 1010 GGTTGGTTTGCCAGAAATATCTCATCTTGGTTGGGGACACTGGTTTACTCTTAGGGATCT 1069
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1003 GGTTGGTTTGCCAGAAATATCTCATCTTGGCTGGGGACACTGGTTTACTCTAAGGGATCT 1062
Query 1070 TCAGCTAGCCACCAACCGTTTTGCTGCTGAAAATGTAATCGGTGAGGGTGGTTATGGAGT 1129
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1063 TCAGCTAGCCACCAACCGTTTTGCTGCAGAAAATGTAATCGGTGAGGGTGGTTATGGAGT 1122
Query 1130 AGTTTATAAGGGTAGACTCATCAACGGTAATGATGTTGCTGTAAAGAAGCTTCTTAACAA 1189
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1123 AGTTTATAAGGGTAGACTCATCAACGGTAACGATGTTGCTGTAAAGAAGCTTCTTAACAA 1182
Query 1190 TCTGGGACAGGCTGAGAAGGAATTCCGGGTTGAAGTTGAGGCTATTGGTCATGTACGGCA 1249
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1183 TCTGGGACAGGCTGAGAAGGAATTCCGTGTTGAAGTTGAGGCTATTGGTCATGTACGGCA 1242
Query 1250 CAAGAATCTTGTAAGGCTTCTAGGATATTGCATAGAGGGTGTTAATAGGATGCTTGTTTA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CAAGAATCTTGTAAGGCTTCTAGGATATTGCATAGAGGGTGTTAATAGGATGCTTGTTTA 1302
Query 1310 TGAGTATGTGAATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1303 TGAGTATGTGAATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGGAAACATAG 1362
Query 1370 CACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCGCTTGCTTA 1429
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1363 CACTCTCACTTGGGAGGCTCGCATGAAGATCCTTGTCGGTACTGCGCAAGCGCTTGCTTA 1422
Query 1430 TTTACATGAAGCAATAGAACCAAAAGTAGTCCACAGAGACATAAAAGCAAGCAATATCCT 1489
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TTTGCATGAAGCAATAGAACCAAAAGTAGTCCACAGAGACATAAAAGCAAGCAATATCCT 1482
Query 1490 GATTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTC 1549
|||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1483 GATTGATGATGACTTTAATGCAAAGCTTTCCGATTTTGGGTTAGCCAAGCTCTTAGACTC 1542
Query 1550 GGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGATATGTCGCACCCGAATA 1609
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1543 GGGTGAGAGTCACATCACGACCAGAGTCATGGGCACCTTTGGGTATGTCGCACCCGAATA 1602
Query 1610 TGCTAATACAGGTCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCT 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TGCTAATACAGGTCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCT 1662
Query 1670 AGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGGTGAATCT 1729
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1663 AGAGACTATAACTGGAAGGGATCCAGTTGACTATGAGCGTCCAGCTAATGAGGTGAATCT 1722
Query 1730 GGTCGAATGGCTAAAGATGATGGTTGGAACAAGAAGAGCTGAAGAAGTTGTTGACTCAAG 1789
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1723 GGTTGAATGGCTAAAGATGATGGTTGGAACAAGAAGAGCTGAAGAAGTTGTTGATTCAAG 1782
Query 1790 GATTGAGCCTCCACCCGCTACACGTGCTCTGAAACGTGCACTTCTTGTTGCCCTGAGATG 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 GATTGAGCCTCCACCCGCTACACGTGCTCTGAAACGTGCACTTCTTGTTGCCCTGAGATG 1842
Query 1850 TGTGGATCCTGAAGCACAGAAACGGCCTAAAATGAGCCAGGTTGTGCGGATGCTTGAATC 1909
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1843 TGTGGATCCTGAAGCACAGAAAAGGCCTAAAATGAGCCAGGTTGTGCGGATGCTTGAATC 1902
Query 1910 CGATGAACACCCTTTTCGTGAGGAGCGGAGGAACAGAAAGAGTAGAACAGCGAGTATGGA 1969
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1903 CGATGAACACCCTTTCCGTGAGGAGCGGAGGAACAGAAAAAGTAGAACAGCGAGTATGGA 1962
Query 1970 GATTGTTGAAACCACTGAGGAATCAGCTGACACAAGCAAAGGGCCTGGTCACTCAGAGAA 2029
|||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1963 GATTGTCGAGACCACTGAGGAATCAGCTGACACAAGCAAACGGCCTGGTGACTCAGAGAA 2022
Query 2030 C-AC--TACAAAACCTGAGAAGACTCATGTATAGGAAACATGTCGCTAGACCCAGTGAAA 2086
| || |||||||||||||||||||||||||||||||| ||||||| | |||| ||||||
Sbjct 2023 CCACACTACAAAACCTGAGAAGACTCATGTATAGGAAATATGTCGCAA-ACCCCGTGAAA 2081
Query 2087 AT-TCAGCTAAGTAACTTCACACCATCAAATGCTCTACCAATCGATGGCAAATGAGTTTT 2145
| ||||||||||| ||||||||| ||||||||||||| |||||||| | |||||||||
Sbjct 2082 AACTCAGCTAAGTAGCTTCACACCCTCAAATGCTCTACTAATCGATGACGAATGAGTTT- 2140
Query 2146 CTC-GTGCTTCTTCTGGAGAAACAAAACAAATTGGGTAAAAGAAGATTCAGATCAAAAGA 2204
||| ||||| | ||||||||||||||||| ||||||||||||| || | || ||
Sbjct 2141 CTCCGTGCTG-T---GGAGAAACAAAACAAATCCGGTAAAAGAAGAT-CA-A--AA--GA 2190
Query 2205 GCTGTACCAGTTATTTCTAACATCCGCCAGGTAGCGTT-TGGT-CTCTCTTGATATTTGT 2262
||||| ||||||||||||||||||||||| ||| | | || | | || ||| | | | |
Sbjct 2191 GCTGTTCCAGTTATTTCTAACATCCGCCAAGTAAC-TAATGATGC-CTTTTG-TCTCTCT 2247
Query 2263 AAAATTATTGGTTCTTCTATAGT-CTTCTATCTGAGTCTTGGCTTTTAGGATGTGAAACA 2321
| | ||| || |||| || ||||||| | ||||||||||||||||||||||||
Sbjct 2248 TGA-T-ATTTGTAATTCTGG-GTTCTTCTAT--G--TCTTGGCTTTTAGGATGTGAAACA 2300
Query 2322 TTAGCCATAGCAGATTTGTTGTTGTACTAAGATTTGAATTCATTTGTCATCC-CTCTATT 2380
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 2301 TTAGCCATAGCTGATTTGTTGTTGTACTAAGAATTGAATTCATTTGTCATCCTCTCTCTT 2360
Query 2381 GATTGAGATATGTATATATAATCAAGTCGTGTGACAT 2417
|||||||| ||||||||||||||||| |||||||||
Sbjct 2361 GATTGAGACCTGTATATATAATCAAGTTGTGTGACAT 2397
> Ahg902301 jgi|Araly1|902301|Al_scaffold_0004_2951
Length=1470
Score = 854 bits (462), Expect = 0.0
Identities = 861/1047 (82%), Gaps = 54/1047 (5%)
Strand=Plus/Plus
Query 522 ATGTCATCTGAGAGTTC-TCTGAGTGCTGACATGTCGAAGAAGGTCTCATTTTTAGGTTT 580
|||||| |||||||||| | | | ||||| ||||| |||||| | |||||||| |||||
Sbjct 1 ATGTCACCTGAGAGTTCGT-TAAACGCTGAAATGTCCAAGAAGATATCATTTTTTGGTTT 59
Query 581 GAA-GGGTATGAAACTGTGGGTACT-GATTTGTTTAGTAGTTGGCA-CATTTGTAGTTTT 637
|| |||| |||| |||||||| | | | ||||| |||||||| | ||| | ||| |
Sbjct 60 AAAGGGGT-TGAAGTTGTGGGTA-TGGGTATGTTTGGTAGTTGG-AGTATTCATTGTTAT 116
Query 638 GGTTTTCTGTATATTATCTCTATGGATTGCATTCCGCCGGAAATCCCGGAGATCATCTCA 697
| || |||| || || ||||||||||| |||||||||||||||| | ||||| | |
Sbjct 117 GATTCTCTGCATCTTGTCTCTATGGATCACATTCCGCCGGAAATCTAGAAGATC-T-T-- 172
Query 698 CAAGC-TGTTACCCTTCAGTCAAATACCACGCGTGGCGAAAGATATCAGGGTTGATGATA 756
||||| ||| || |||| |||||||||| ||| | ||||||||||| | | || |
Sbjct 173 CAAGCAAGTTTCCTTTCAACCAAATACCACATGTGTCCAAAGATATCAGAG-T--CGACA 229
Query 757 GAGTTGGGT-TTCAAAATCAT-A--ATGAAAATTTATCTATCACAAATG-CTGATAAATC 811
| | | ||| |||| |||| | | ||||| ||||| ||| | ||||| |||||||||
Sbjct 230 GGGCT-GGTGTTCAGAATCCTCACCCTGAAAGTTTATATAT-AGAAATGAATGATAAATC 287
Query 812 TAGTGACAGAAACTCTGGGAA-GATGATGTCTTACTTGGGAAGAACGAAGTCTAGTGATA 870
| | |||| || |||||||||| ||||||||||||| |||||||||||||
Sbjct 288 CA---CCGGAAA-------AACGATGATGTCTCACTTGGGAAGAACCAAGTCTAGTGATA 337
Query 871 ATGATAGTATAAGTCAATGTAGCTCTGTGC-ATCATCATGAGAGAGCTTGTAGTTCTCAC 929
|||||| | | ||||| ||||||||||| | |||| |||||||||||||||||||||||
Sbjct 338 ATGATACTTTGAGTCAGTGTAGCTCTGT-CAATCACCATGAGAGAGCTTGTAGTTCTCAT 396
Query 930 TCTGGTGAAGATGGAAGCTTTGG-AGCTGCTTGGAGACAAAATTCCCTATCACAGGGCGG 988
||||||||||| ||| ||||||| || |||| |||||| | ||| | || ||
Sbjct 397 TCTGGTGAAGAAGGAGGCTTTGGAAG-TGCTGGGAGAC---A----GTAT-GGA-GGAGG 446
Query 989 -GCTAGTAACAGCATCTCCTTTGGTTGGTTTGCCAGAAATATCTCATCTTGGTTGGGGAC 1047
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 447 ACCT-GTAACAGCATCTCCTTTGGTTGGTTTACCAGAAATATCCCATCTTGGTTGGGGAC 505
Query 1048 ACTGGTTTACTCTTAGGGATCTTCAGCTAGCCACCAACCGTTTTGCTGCTGAAAATGTAA 1107
||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 506 ACTGGTTTACTCTTAGGGATCTTGAGCTAGCTACCAACCGTTTTGCTGCAGTGAATGTGC 565
Query 1108 TCGGTGAGGGTGGTTATGGAGTAGTTTATAAGGGTAGACTCATCAACGGTAATGATGTTG 1167
| || ||||||||||||||||||||||||| ||||| ||| | || |||| || ||||
Sbjct 566 TTGGAGAGGGTGGTTATGGAGTAGTTTATAGGGGTAAACTTGTTAATGGTACCGAGGTTG 625
Query 1168 CTGTAAAGAAGCTTCTTAACAATCT-GGGACAGGCTGAGAAGGAATTCCGGGTTGAAGTT 1226
| |||||||||||||| |||||||| ||| || |||||||||||||| ||||| ||||||
Sbjct 626 CAGTAAAGAAGCTTCTGAACAATCTAGGG-CAAGCTGAGAAGGAATTTCGGGTAGAAGTT 684
Query 1227 GAGGCTATTGGTCATGTACGGCACAAGAATCTTGTAAGGCTTCTAGGATATTGCATAGAG 1286
||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||||
Sbjct 685 GAGGCTATTGGTCATGTTCGACACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGAG 744
Query 1287 GGTGTTAATAGGATGCTTGTTTATGAGTATGTGAATAGTGGTAACTTAGAACAATGGCTA 1346
|| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 745 GGAGTTCATCGGATGCTTGTTTATGAGTATGTTAATAGTGGTAACTTAGAACAATGGCTA 804
Query 1347 CATGGAGCCATG-GGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGT 1405
|||||||| ||| || || || | | ||||||||||||||| || ||||| ||| ||
Sbjct 805 CATGGAGCAATGCGGCAA-CATGGAAATCTCACTTGGGAGGCACGGATGAAGATCATTAC 863
Query 1406 TGGTACTGCGCAGGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTAGTCCACAG 1465
|||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 864 CGGTACTGCACAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTGGTCCACAG 923
Query 1466 AGACATAAAAGCAAGCAATATCCTGATTGACGATGACTTCAATGCAAAGCTTTCTGATTT 1525
|||||||| |||||| ||||| ||||||| ||||| || |||||||| || ||||| ||
Sbjct 924 AGACATAAGAGCAAGTAATATATTGATTGATGATGAGTTTAATGCAAAACTCTCTGACTT 983
Query 1526 TGGG-TTGGCCAAGCTCTTAGACTCGG 1551
|||| || ||||||||||| |||||||
Sbjct 984 TGGGGTTAGCCAAGCTCTTGGACTCGG 1010
Score = 414 bits (224), Expect = 1e-114
Identities = 350/410 (85%), Gaps = 12/410 (3%)
Strand=Plus/Plus
Query 1590 GGATATGTCGCACCCGAATATGCTAATACAGGTCTATTGAATGAGAAGAGTGACATCTAT 1649
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct 1009 GGATATGTAGCACCAGAATATGCTAATACAGGTCTGTTAAACGAGAAGAGTGATATATAT 1068
Query 1650 AGCTTTGGTGTCCTGCTGCTAG-AGACTATAACTGGAAGAGATCCAGTTGACTATGAACG 1708
|||||||||||| |||| || | || || ||||||| ||||||||||||| |||| |||
Sbjct 1069 AGCTTTGGTGTCTTGCTTCTTGAAG-CTGTAACTGGTCGAGATCCAGTTGATTATGGACG 1127
Query 1709 TCCAGCTAATGAGGTGAATCTGGTCGAATGGCTAAAGATGATGGTTGGAACAAGAAGAGC 1768
||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1128 TCCTGCTAATGAGGTGAATCTTGTTGAATGGCTAAAGATGATGGTCGGAACAAGAAGAGC 1187
Query 1769 TGAAGAAGTTGTTGACT-CAAGGA-TTGAGCCTCCACC-CGCTACACGTGCTCTGAAACG 1825
|| |||||||| || | ||| || |||| ||| ||| | || | ||||| |||||||
Sbjct 1188 AGAGGAAGTTGTGGA-TCCAA-GACTTGAACCTAGACCTAG-TAAAAGTGCTTTGAAACG 1244
Query 1826 TGCACTTCTT-GTTGCCCTGAGATGTGTGGATCCTGAAGCACAGAAACGGCCTAAAATGA 1884
||||||| || ||| |||| |||||||| |||||||||||| ||||||| |||| |||||
Sbjct 1245 TGCACTT-TTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGA 1303
Query 1885 GCCAGGTTG-TGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAGGAGCGGAGGAAC 1943
| ||| ||| | ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1304 GTCAGATTGCT-CGGATGCTTGAATCCGATGAACACCCTTTTCACAAGGAGAGGAGGAAC 1362
Query 1944 AGAAAGAGTAGAACAGCGAGTATGGAGATTGTTGAAACCACTGAGGAATC 1993
|||||||| ||||| ||||| |||||||||||||| |||| || |||||
Sbjct 1363 AGAAAGAGCAGAACCGCGAGCATGGAGATTGTTGAGACCAAAGACGAATC 1412
> Ahg470784 jgi|Araly1|470784|fgenesh2_kg.1__738__AT1G07570.2
Length=1547
Score = 62.1 bits (33), Expect = 2e-08
Identities = 49/57 (86%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1482 AATATCCTGATTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAG 1538
|||||||| ||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 815 AATATCCTTCTTGACTCGGAGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCCAAG 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91073775795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5