BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59150.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898879 jgi|Araly1|898879|Al_scaffold_0005_2845 1072 0.0
> Ahg898879 jgi|Araly1|898879|Al_scaffold_0005_2845
Length=1176
Score = 1072 bits (580), Expect = 0.0
Identities = 639/668 (96%), Gaps = 2/668 (0%)
Strand=Plus/Plus
Query 326 GGGTCAACGAAAAAATGtttttttCAAGGCTTTCGTCGATAGGTTACTCTCTCAACGAGT 385
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 3 GGGTCAACGAAAAAATGTTTTTTTCAAGGCTTTCGTGGATAGGTTACTGTCTCAACGAGT 62
Query 386 CGAGACTTCATCACATGTTCAAAGAGTCTCTCTCAAGTGTCGTCAAGGAGGTGTTGAACC 445
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 63 CGAGACTTCATCACCTGTTCAAAGAGTCTCTTTCAAGTGTCGTCAAGGAGGTGTTGCACC 122
Query 446 AGATTGTGTAATCAAGTGGATACTAACAACAGTAAGGGATCTTGGTGTCTTGGATCTTTC 505
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 123 AGATTGTATAATCAAGTGGATACTAACAACAGTAAGGGATCTTGGTGTCTTAGATCTTTC 182
Query 506 TCTATGCATTGATTTTGGAATCTTTCATTTGCCATTTAATGTCTTTAGGAGCAAGACTTT 565
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTATGCATCGATTTTGGAATCTTTCATTTGCCATTTAATGTCTTTAGGAGCAAGACTTT 242
Query 566 GGTCAAA-CTTAGAATTGGAACAATGATCCGTCTTTCTCAGTTTCCTTCAGATGTTGTTT 624
||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 243 GGT-AAACCTTAGAATTGGAACAATGATCCGTCTTGGTCAGTTTCCTAAAGATGCTGTTT 301
Query 625 CTCCGACGCTTAATTCTCTTGTTCTTGATTTGGTTGAGTTTCGTGATGGTGATAAGGTTG 684
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 302 CTCCGACGCTTAATTCTCTTGTTCTTGATTTGGTTGAGTTTCGTGATGATGATAAGGTTG 361
Query 685 AGTTTAGACAGATTCTGTTAGCTTTTCCTTCACTTCAAAGCCTGCGGGTTCATGAATCTA 744
||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 362 GGTTTAGACAGATTCTATTAGTTTTTCCTTCACTTCAAAGCCTGCGGGTCCATGAATCCA 421
Query 745 ACAAGTGGAAGTTTTGGAATGGTTCTGCTTCAAGTCGAACGCTTAAGAGTCTTGTATATA 804
|||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 422 ACAAGTGGAAGTTTTGGAATGGGTCTGCTTCAACTCGAACGCTCAAGAGTCTTGTATATA 481
Query 805 GAAGTGATGATGATTCCTCTGCTCCTAAACCTTGTGTTTCGTTTGATACTCCGAGTCTTG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GAAGTGATGATGATTCCTCTGCTCCTAAACCTTGTGTTTCGTTTGATACTCCGAGTCTTG 541
Query 865 TTTACTTGGACTATTCTGATATGGTTGCGGATAAGTATGAAAATCTGAAATTTGACAGCC 924
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 542 TTTACTTGGACTATTCGGATATGGTTGCGGATAAGTATGAAAATTTGAAATTTGACAGCC 601
Query 925 TTGTTGAAGCTAGGCTTGATCTTCATTTGACCGCTTTTCAAATCATGCGCAAACCAAATA 984
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 602 TTGTTGAAGCTAGGCTTGATCTTCATTTGACTGCTTATCAAATCATGCGCAAACCAAATA 661
Query 985 ATATTGGT 992
| ||||||
Sbjct 662 ACATTGGT 669
Score = 654 bits (354), Expect = 0.0
Identities = 443/484 (92%), Gaps = 13/484 (3%)
Strand=Plus/Plus
Query 1072 AGGCGCTCTATTACCGTGGTGAAAAGATACCAATGTTCAACAATTTGATTACTTTATCTC 1131
|||||||||||||||| ||||| | |||||| ||||||||||||||||| |||||||||
Sbjct 704 AGGCGCTCTATTACCGGGGTGACAGGATACCGGTGTTCAACAATTTGATTTCTTTATCTC 763
Query 1132 TGGGAAGCGATAAACCTCATGGTTCACCATTCATCTTCTGGAAATTGCTTCCATCTCTGC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGGGAAGCGATAAACCTCATGGTTCACCATTCATCTTCTGGAAATTGCTTCCATCTCTGC 823
Query 1192 TCAACAACTCTCTTAA-ACTAGAAACTCTCATCATCAAGGGTCTAGTGCATTATGTTGCT 1250
||||||||||||| || | | ||||||||||||||||||||||||||||| |||||||||
Sbjct 824 TCAACAACTCTCTCAATA-TTGAAACTCTCATCATCAAGGGTCTAGTGCACTATGTTGCT 882
Query 1251 GAAGGATGGGAAGGTTTGAGTCCTATGACTCCTATGAGCCGTCTCTGCTTTTCATGGGAT 1310
|||||||||||| | | | | ||| |||||||||||||||||||||||||||||||
Sbjct 883 GAAGGATGGGAA-G--T---T--T-TGAGTCCTATGAGCCGTCTCTGCTTTTCATGGGAT 933
Query 1311 ACTGTGTCTGATTCTCTGTCATCATCTGCGATGAAGGTTTTAGAGATCAGTGGGTATAAA 1370
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 934 GCTGTGTCTGATTCTCTGTCATCATCTGCAATGAAGGTTTTAGAGATCACTGGGTATAAA 993
Query 1371 GGAACTTGGCAAGAGCTGAATCAAATGAAGCGTTTCTTGGGGAATCTATCGCGTCTTGAA 1430
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 994 GGAACCTCGCAAGAGCTTAATCAAATGAAGCGTTTCTTGGGGAATCTATCGCGTCTTCAA 1053
Query 1431 GTGGTTAGGGTTTACCATAAGGCAATGGATGATA-AGGAAAGAATTAACGTCATGTTTGA 1489
||||||||||||||||| |||||| ||||||||| || |||||| || ||||||| ||
Sbjct 1054 GTGGTTAGGGTTTACCACAAGGCAGTGGATGATAGAG-AAAGAAGTAGCGTCATGAAAGA 1112
Query 1490 TCTTTTTCTTCTTCCCAAAGTTTCATCTGAATGCGATATCCAAGTCATGAAGGAAACTGC 1549
|||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1113 TCTTTTGCTTCTTCCCAAAGCTTCATCCGAATGCGAGATCCAAGTCATGAAGGAAACTGC 1172
Query 1550 TTGA 1553
||||
Sbjct 1173 TTGA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5