BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59190.1

Length=2055
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942562 jgi|Araly1|942562|scaffold_603106.1                        189    7e-47


> Ahg942562 jgi|Araly1|942562|scaffold_603106.1
Length=238

 Score =  189 bits (102),  Expect = 7e-47
 Identities = 169/201 (84%), Gaps = 6/201 (3%)
 Strand=Plus/Plus

Query  1590  TCTCTAGTTATAAAGATGACATGGAGAGGCAGACGGATCTTATCGAGCACTTT-TTGGAG  1648
             |||||||||| |||||||||||||| | ||| |||||  | ||| || | ||| ||||||
Sbjct  1     TCTCTAGTTACAAAGATGACATGGATAAGCATACGGAGGTGATCAAGTA-TTTCTTGGAG  59

Query  1649  -TCAATGCCAAACCTTGAACAGGTGATATTATTCTATGACACTACATATGATGATGATCT  1707
              | |||||  || |||||||| | |||||||| | |||| ||  ||| ||||||||||||
Sbjct  60    AT-AATGCTGAATCTTGAACAAGCGATATTATACGATGATACGCCATTTGATGATGATCT  118

Query  1708  GAA-AATAGTATCAACCCAACTTCAGATGCTTGAAAAAGTAGCCTCACCCAAATGCAAGA  1766
              ||  ||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct  119   -AAGTATAATATCAACCGAACTTCAGATGCATGAAAATGTAGCCTCACCCAAATGCAAGA  177

Query  1767  TCCAAGTAATCTCTGATAACA  1787
             ||||||| |||||||||||||
Sbjct  178   TCCAAGTTATCTCTGATAACA  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77285107105


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5