BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59200.1 Length=1788 Score E Sequences producing significant alignments: (Bits) Value Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847 1160 0.0 > Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847 Length=1437 Score = 1160 bits (628), Expect = 0.0 Identities = 817/907 (90%), Gaps = 17/907 (2%) Strand=Plus/Plus Query 153 ATCTTGTCTTTCCTTC-CCACAAAAGAAGCAGCTTCTACTTCGGTCCTCTCCAAAAAATG 211 |||||||| | || || | ||||||||||| ||||| || || | ||||| | || ||| Sbjct 58 ATCTTGTCATACC-TCACTACAAAAGAAGCTGCTTCAACATCACTTCTCTCGAGAAGATG 116 Query 212 GCGTTATTTGTTTGCGTATGTAACAAATCTTGACTTTGATGACTC-G-------G-A-C- 260 ||||||| | |||| | ||| |||| ||||| ||||||||||| | | | | Sbjct 117 GCGTTATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTTTTTCTGCATCG 176 Query 261 -TAT-CA-GG-ATGGTAAACCAAAAAGCGATGTTGAACTTAGTAGAAGTTTTATGGAATT 316 || | || ||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 177 GGATAAACGGCATGATAAACCAAAAAGCGATGATGAACTTAGTACAAGTTTTATGGAATT 236 Query 317 TGTGGACAGAGTCTTGGCTTTGCAAGGGAATGGTTCCGTAAATAAATTCTCTCTAGAGTG 376 |||||||||||| ||||||||||||||||||||| || |||| | |||||||||||| || Sbjct 237 TGTGGACAGAGTTTTGGCTTTGCAAGGGAATGGTACCATAAACAGATTCTCTCTAGACTG 296 Query 377 TAGTAATTATGATGTTGATCTTGCTCGTGTCACTGGTTGGATATTGAATGTGTTAGGACG 436 | |||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| Sbjct 297 TTCTAATTATGATGTTGATCTAGCTCGTGTTACTGGTTGGATTTTGAATGTCTTAGGACG 356 Query 437 CGGTGTATCAGAGCTTGATTTAAGCATCTTGGAGTATCCCTTACCTTCGGAGATCTTTGT 496 |||||||||||| |||||| ||||| ||||||||||| |||| ||||| ||||||||||| Sbjct 357 CGGTGTATCAGATCTTGATCTAAGCCTCTTGGAGTATTCCTTGCCTTCCGAGATCTTTGT 416 Query 497 GAGTAAGACACTGGTTAGGCTGAAATTAGGACCGGCAAATGATCTTACTCTCACCCTTGA 556 ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||| Sbjct 417 GAGTAAGACTCTGGTTAAGCTGAAATTAGGACCGGCAAATGATCTCACTCTCACCATTGA 476 Query 557 TAGGAAAGATGTTTTTCTTCCAAAGCTCAAGACTCTCTATATTGATTGTGTTGATGTTCA 616 ||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| ||||| Sbjct 477 TAGGAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTGTTGAGGTTCA 536 Query 617 AGAGCGTGGTTTTGGGTTTGTAAAGCTTCTTTCTGGCTGTCCCGTGCTCGAGGAGTTAGT 676 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 537 AGAGCGTGGTTTTGGTTTTGTAAAGCTTCTCTCTGGCTGTCCCGTGCTCGAGGAGTTAGT 596 Query 677 TCTGATGAATATCGGGTGGGAAAATTGGAAGTTTTGCTCTGTGTCTGTCAAAACCCTGAA 736 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 597 TCTGATGAATATCGGGTGGGAAAACTGGAAGTTTTGCTCTGTGTCTGTTAAAACCCTCAA 656 Query 737 GAGGCTGACGTTTTTCTGTGAGGAGACTTATGAGAATCCAAAGAGCGTGTCATTTGATAC 796 ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 657 GAGGCTGACGTTTTTCTGTGAAGACAGTTATGAGAATCCAAAGAGCGTGTCATTTGATAC 716 Query 797 TCCAAACCTTGTTTACCTAGAGTATTCTGACGCTATTGCGAGCAAGTATCCGAAAGTGAA 856 ||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||| Sbjct 717 TCCAAACCTTGTTTACCTAGAATATTCTGATGCTATTGCGGGCAAGTATCCAAAAGTGAA 776 Query 857 CTTTAATTCGCTCGTTGAAGCTCATATCGGTCTTCGACTGACAGAAGATCAGAGTGGAGA 916 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 777 CTTTAATTCGCTCGTTGAAGCTCATATTGGTCTTCGACTGACAGAAGATCAGAGTGGAGA 836 Query 917 TGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGGTGATGAGAAAAAACAGATGGTCGG 976 ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| Sbjct 837 TGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGATGATGAGCAAAACCAGATGGTCGG 896 Query 977 TAATGCAACGGATTTTCTTAAGGGAATAAGCACTGTTCAGATCCTTTACCTATCTGCCCA 1036 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 897 TAATGCAACAGATTTTCTTAAGGGAATAAGCACTGTTCAAATCCTTTACCTATCTGCCGA 956 Query 1037 AGCTATT 1043 ||||||| Sbjct 957 AGCTATT 963 Score = 771 bits (417), Expect = 0.0 Identities = 455/474 (96%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 1185 AAGCGTCTTCTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCG 1244 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 AAGCGTCTTGTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCG 1023 Query 1245 AAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTTAAGATATTTCTGTTTGAT 1304 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1024 AAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTAAAGATATTTCTGTTTGAT 1083 Query 1305 GACAACGATGAAGAAGACGGGTCGGAAATGAGGCAGATCAAGTATTTCTTGGAGAAAATG 1364 ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 1084 GACAACGATGAAGAAGACGGGTCAGAAATGCGGCAGATCAAGAATTTCTTGGAGAAAATG 1143 Query 1365 CCCCGTCTAGAAGAGTTGGTAGTATACTACAATACAGCATATGACCCTGCTGTGTTAGAA 1424 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1144 CCGCGTCTTGAAGAGTTGATAGTATACTACAATACATCATATGACCCTGCTGTGTTAGAA 1203 Query 1425 TTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATCCAGGTA 1484 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1204 TTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATTCAGGTA 1263 Query 1485 ATCTCTGAGAATCTTAGTTTGTCATCTACCGTGCCTTCTTTCTTGACAACGAGATGGTCT 1544 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 1264 ATCTCTGAGAATCTTAGTTTGTCATCTACTGTTCCTTCTTTCTTAACAACGAGATGGTCT 1323 Query 1545 TCTCTTCCTCCTGAAGAAGCATATCCATGGGTTGACTCTCCTCCTCCCCAAATAATAGAT 1604 ||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct 1324 TCTCTTCCTACTGAAGAAGAATATCCCTGGGTTGAGTCTCCTCCTCCCCAAATAATAGAT 1383 Query 1605 CCCATGTTAGAGTATGGTTCTCCTCCAGAAGATGATGATTCCTGGTTGTACTAG 1658 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1384 CCCATGTTACAGTATGGTTCTCCTCCAGAAGATGAAGATTCCTGGTTGTACTAG 1437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67115011690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5