BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59200.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847 1160 0.0
> Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847
Length=1437
Score = 1160 bits (628), Expect = 0.0
Identities = 817/907 (90%), Gaps = 17/907 (2%)
Strand=Plus/Plus
Query 153 ATCTTGTCTTTCCTTC-CCACAAAAGAAGCAGCTTCTACTTCGGTCCTCTCCAAAAAATG 211
|||||||| | || || | ||||||||||| ||||| || || | ||||| | || |||
Sbjct 58 ATCTTGTCATACC-TCACTACAAAAGAAGCTGCTTCAACATCACTTCTCTCGAGAAGATG 116
Query 212 GCGTTATTTGTTTGCGTATGTAACAAATCTTGACTTTGATGACTC-G-------G-A-C- 260
||||||| | |||| | ||| |||| ||||| ||||||||||| | | | |
Sbjct 117 GCGTTATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTTTTTCTGCATCG 176
Query 261 -TAT-CA-GG-ATGGTAAACCAAAAAGCGATGTTGAACTTAGTAGAAGTTTTATGGAATT 316
|| | || ||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 177 GGATAAACGGCATGATAAACCAAAAAGCGATGATGAACTTAGTACAAGTTTTATGGAATT 236
Query 317 TGTGGACAGAGTCTTGGCTTTGCAAGGGAATGGTTCCGTAAATAAATTCTCTCTAGAGTG 376
|||||||||||| ||||||||||||||||||||| || |||| | |||||||||||| ||
Sbjct 237 TGTGGACAGAGTTTTGGCTTTGCAAGGGAATGGTACCATAAACAGATTCTCTCTAGACTG 296
Query 377 TAGTAATTATGATGTTGATCTTGCTCGTGTCACTGGTTGGATATTGAATGTGTTAGGACG 436
| |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 297 TTCTAATTATGATGTTGATCTAGCTCGTGTTACTGGTTGGATTTTGAATGTCTTAGGACG 356
Query 437 CGGTGTATCAGAGCTTGATTTAAGCATCTTGGAGTATCCCTTACCTTCGGAGATCTTTGT 496
|||||||||||| |||||| ||||| ||||||||||| |||| ||||| |||||||||||
Sbjct 357 CGGTGTATCAGATCTTGATCTAAGCCTCTTGGAGTATTCCTTGCCTTCCGAGATCTTTGT 416
Query 497 GAGTAAGACACTGGTTAGGCTGAAATTAGGACCGGCAAATGATCTTACTCTCACCCTTGA 556
||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 417 GAGTAAGACTCTGGTTAAGCTGAAATTAGGACCGGCAAATGATCTCACTCTCACCATTGA 476
Query 557 TAGGAAAGATGTTTTTCTTCCAAAGCTCAAGACTCTCTATATTGATTGTGTTGATGTTCA 616
||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |||||
Sbjct 477 TAGGAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTGTTGAGGTTCA 536
Query 617 AGAGCGTGGTTTTGGGTTTGTAAAGCTTCTTTCTGGCTGTCCCGTGCTCGAGGAGTTAGT 676
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 AGAGCGTGGTTTTGGTTTTGTAAAGCTTCTCTCTGGCTGTCCCGTGCTCGAGGAGTTAGT 596
Query 677 TCTGATGAATATCGGGTGGGAAAATTGGAAGTTTTGCTCTGTGTCTGTCAAAACCCTGAA 736
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 597 TCTGATGAATATCGGGTGGGAAAACTGGAAGTTTTGCTCTGTGTCTGTTAAAACCCTCAA 656
Query 737 GAGGCTGACGTTTTTCTGTGAGGAGACTTATGAGAATCCAAAGAGCGTGTCATTTGATAC 796
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 657 GAGGCTGACGTTTTTCTGTGAAGACAGTTATGAGAATCCAAAGAGCGTGTCATTTGATAC 716
Query 797 TCCAAACCTTGTTTACCTAGAGTATTCTGACGCTATTGCGAGCAAGTATCCGAAAGTGAA 856
||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||
Sbjct 717 TCCAAACCTTGTTTACCTAGAATATTCTGATGCTATTGCGGGCAAGTATCCAAAAGTGAA 776
Query 857 CTTTAATTCGCTCGTTGAAGCTCATATCGGTCTTCGACTGACAGAAGATCAGAGTGGAGA 916
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 CTTTAATTCGCTCGTTGAAGCTCATATTGGTCTTCGACTGACAGAAGATCAGAGTGGAGA 836
Query 917 TGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGGTGATGAGAAAAAACAGATGGTCGG 976
||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 837 TGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGATGATGAGCAAAACCAGATGGTCGG 896
Query 977 TAATGCAACGGATTTTCTTAAGGGAATAAGCACTGTTCAGATCCTTTACCTATCTGCCCA 1036
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 897 TAATGCAACAGATTTTCTTAAGGGAATAAGCACTGTTCAAATCCTTTACCTATCTGCCGA 956
Query 1037 AGCTATT 1043
|||||||
Sbjct 957 AGCTATT 963
Score = 771 bits (417), Expect = 0.0
Identities = 455/474 (96%), Gaps = 0/474 (0%)
Strand=Plus/Plus
Query 1185 AAGCGTCTTCTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCG 1244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AAGCGTCTTGTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCG 1023
Query 1245 AAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTTAAGATATTTCTGTTTGAT 1304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1024 AAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTAAAGATATTTCTGTTTGAT 1083
Query 1305 GACAACGATGAAGAAGACGGGTCGGAAATGAGGCAGATCAAGTATTTCTTGGAGAAAATG 1364
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1084 GACAACGATGAAGAAGACGGGTCAGAAATGCGGCAGATCAAGAATTTCTTGGAGAAAATG 1143
Query 1365 CCCCGTCTAGAAGAGTTGGTAGTATACTACAATACAGCATATGACCCTGCTGTGTTAGAA 1424
|| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1144 CCGCGTCTTGAAGAGTTGATAGTATACTACAATACATCATATGACCCTGCTGTGTTAGAA 1203
Query 1425 TTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATCCAGGTA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1204 TTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATTCAGGTA 1263
Query 1485 ATCTCTGAGAATCTTAGTTTGTCATCTACCGTGCCTTCTTTCTTGACAACGAGATGGTCT 1544
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1264 ATCTCTGAGAATCTTAGTTTGTCATCTACTGTTCCTTCTTTCTTAACAACGAGATGGTCT 1323
Query 1545 TCTCTTCCTCCTGAAGAAGCATATCCATGGGTTGACTCTCCTCCTCCCCAAATAATAGAT 1604
||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1324 TCTCTTCCTACTGAAGAAGAATATCCCTGGGTTGAGTCTCCTCCTCCCCAAATAATAGAT 1383
Query 1605 CCCATGTTAGAGTATGGTTCTCCTCCAGAAGATGATGATTCCTGGTTGTACTAG 1658
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1384 CCCATGTTACAGTATGGTTCTCCTCCAGAAGATGAAGATTCCTGGTTGTACTAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5