BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59220.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486390 jgi|Araly1|486390|fgenesh2_kg.5__2382__AT3G59220.1 1487 0.0
Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945 730 0.0
> Ahg486390 jgi|Araly1|486390|fgenesh2_kg.5__2382__AT3G59220.1
Length=991
Score = 1487 bits (805), Expect = 0.0
Identities = 919/975 (94%), Gaps = 4/975 (0%)
Strand=Plus/Plus
Query 84 AACAATAGTGTACCAAGAATTGTAATCAAGAAAGTTCTAGCAAAGCTTGAGAAGGAAGGT 143
|||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 19 AACAATAGCGTACCAAGACTTGTAATCAAGAAAGTTCTAGCAAAGCTTCAGAAGGAAGGT 78
Query 144 GAAGGAGCTGTCGTTAGAAATGGCATCACAAAGATTGACCAGAAGTTATTGGACCCGTTC 203
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 79 GAAGGCGCTGTCGTTAGAAACGGCATCACAGAGATTGACCAGAAGTTATTGGACCCGTTC 138
Query 204 GTGTTGCTAGTTGAATTTTCCTTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGA 263
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 139 GTGTTGCTAGTTGAATTTTCCCTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGA 198
Query 264 GGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTCACAAAGATCCTAAAGGT 323
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 199 GGTTTTGAAAGTGTTACATACATGCTACAAGGAGGTATCATTCACAAAGATCCCAAAGGT 258
Query 324 CATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATT 383
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CATAAAGGTACAATCCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATT 318
Query 384 CATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAGCTTTGGATCAATCTCCCT 443
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 319 CATTCTGAATTTCCGGAAGAAGAAGTCAACACTGGTTTACAGCTTTGGATCAATCTCCCT 378
Query 444 TCCACTGAAAAAATGACTGAACCAAAATATAAGGAACTATCGAGTTTAGACATTCCTCGA 503
|||||||| ||||||| ||||||||||||||| ||||| || |||| | |||| || |||
Sbjct 379 TCCACTGACAAAATGATTGAACCAAAATATAAAGAACTCTCAAGTTCAAACATCCCGCGA 438
Query 504 GCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGGAGATTCAATGGGAATCAAATCT 563
||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 439 GCAGAAGAAAAAGGAGTAGAAGTCAAAGTCCTAGCCGGAGATTCAATGGGAATCAAATCT 498
Query 564 CCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAA 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAA 558
Query 624 ACCCACCAAACCGTTCCAGAATCATGGACCGCTTTCGCTTACATTATAGAAGGCGATGAA 683
|||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 559 ACCCACCAGACCGTTCCAGAATCTTGGACCGCTTTTGCCTACATTATAGAAGGCGATGAG 618
Query 684 GGTGTTTTCGGTTCCTTGAACTCTTCCGCAATATCGGCCCACCATGTTGTTGTGTTTGGG 743
||||| |||||||| |||||||||||||| ||||| || || |||||||||||||||||
Sbjct 619 GGTGTGTTCGGTTCGTTGAACTCTTCCGCTATATCCGCGCATCATGTTGTTGTGTTTGGA 678
Query 744 CCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCATTGAGGTTTTTGTTG 803
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 679 CCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCGTTGAGGTTTCTGTTG 738
Query 804 ATTGCAGGGGAACCTATCGGCGAGCCTGTGGTTCAGTGTGGTCCCTTTGTGATGAATTCA 863
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 739 ATTGCAGGGGAACCGATCGGTGAGCCTGTGGTTCAGTGTGGTCCGTTTGTGATGAATTCG 798
Query 864 CAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATG 858
Query 924 GCCAAGTGTTAGAGGTTACAGTGAAAAGAGTTTGTAAACAAAAACCAT-TCTGATTATTT 982
|||||||||||||||| ||||||||||||||||||||||||||||||| | | || |||
Sbjct 859 GCCAAGTGTTAGAGGTCACAGTGAAAAGAGTTTGTAAACAAAAACCATATAGG-TTCTTT 917
Query 983 TGGATTTTGTTGTCTTTATTCCACATTCAAGATGAGATCAATGTTAGGGGCTATAATATC 1042
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 918 TGGGTTTTGTTTTCTTTATTTCACATTCAAGATGAGATCAATGTTAGGGGCTATAATAAC 977
Query 1043 AA-CCATCTCTTTCA 1056
|| || |||||||||
Sbjct 978 AATCC-TCTCTTTCA 991
> Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945
Length=858
Score = 730 bits (395), Expect = 0.0
Identities = 693/834 (83%), Gaps = 32/834 (4%)
Strand=Plus/Plus
Query 130 TTGAGAAGGAAGGTGAAGGAGCTGTCGTTAGA-AATGGCATCACAAAGATTGACC-AGAA 187
||||||| |||||||| || ||||| |||||| | |||||||| |||| ||||| || |
Sbjct 41 TTGAGAATGAAGGTGATGGTGCTGTTGTTAGACGA-GGCATCACCAAGAGTGACCAAG-A 98
Query 188 GTTATTGGACCCGTTCGTGTTGCTAGTTGAATTTTCCTTTTCA-CTCTCAGCTGGATTCC 246
||| |||||||||||||| | |||||||||||||||| ||||| ||| | | |||||||
Sbjct 99 GTTGTTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTC-CTGGTGGATTCA 157
Query 247 CAGATCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTC 306
|||||||||||||||||||||||||||||| ||||||||| | || ||||| |||||||
Sbjct 158 AAGATCATCCTCACAGAGGTTTTGAAAGTGTCACATACATGTTGCAAGGAGGCATCATTC 217
Query 307 ACAAAGATC-CTAAAGGTCATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACA 365
|| |||| | ||| ||| ||||||||||||| || | |||||||||||||||||||||
Sbjct 218 ACCAAGA-CTTTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACA 276
Query 366 GCAGGAAGAGGAATCATTCATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAG 425
||||||||||||||||||||||| ||| | || |||||| |||| ||||| || ||||||
Sbjct 277 GCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAG 336
Query 426 CTTTGGATCAATCTCCCTTCCACTGAAAAAATGACTGAA-CC-AAAA-TATAAGGA-ACT 481
||||||||||| |||||||||| ||| ||||||| || | || |||| | || | | | |
Sbjct 337 CTTTGGATCAACCTCCCTTCCAGTGACAAAATGA-TGGAGCCTAAAAATCTA-G-ATA-T 392
Query 482 ATCGAGTTTAGACATTCCTCGAGCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGG 541
||||||| ||| |||||| ||||||| ||| | ||||| ||||||||||||||||| ||
Sbjct 393 GTCGAGTTCAGAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGG 452
Query 542 AGATTCAATGGGAATCAAATCTCCAGTCTACACAAGAACACCAA-CAATGTTCCTTGACT 600
||| ||||||||| |||||||||| ||||||||| ||||||| || ||||||| ||||
Sbjct 453 AGAGTCAATGGGAGTCAAATCTCCTTTCTACACAAAAACACCAGTCA-TGTTCCTGGACT 511
Query 601 TTACCCTCAAGCCAGGA-TCTCAAACCCACCAAACCGTTCCAGAATCATGGACCGC-TTT 658
|||| ||| | ||| || | |||||||||||| ||||||||||| ||||||||||| |||
Sbjct 512 TTACTCTCGATCCAAGAGT-TCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTT 570
Query 659 CGCTTACATTATAGAAGGCGATGAAGGTGT-TTTCGGTTCCTTGAACTCTTCCGCAATAT 717
|| ||||||||||||||||||||||| || ||| | | ||| | |||||||| || ||
Sbjct 571 -GCCTACATTATAGAAGGCGATGAAGGCGTGTTTAGCT-CCTCGGACTCTTCCACAGTA- 627
Query 718 CG-GCCCACCATGTTGTTGTGTTTGGGCCAGGGGATTTAGTTAGCGTGTGGAACAAGTCA 776
| || || ||||||| |||||||| ||||||| ||||||||||||||||| ||||
Sbjct 628 CAAGCACATAATGTTGTGGTGTTTGGAACAGGGGACGAAGTTAGCGTGTGGAACACGTCA 687
Query 777 A-CTTCGAGGTCATTGAGGTTTTTGTTGATTGCAGGGGAACCTATCGGCGAGCCTGTGGT 835
| || | || || |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 688 AGCT-CTAGATCGTTGAGGTTCTTGTTGATTGCAGGGGAACCGATTGGCGAGCCTGTGGT 746
Query 836 TCAGTGTGGTCCCTTTGTGATGAATTCACAGGCGGAGATCGATATGGCTTTTGATG-ACT 894
| || |||| || ||||||||||| ||||| || ||||| |||||| | || | | |||
Sbjct 747 TGAGCGTGGGCCATTTGTGATGAACTCACAAGCTGAGATTGATATGACGATT-AGGGACT 805
Query 895 ATCAG-AATGCTAAGAACGGGTTTGAAATGGCCAAGTGTTAGAGGTTACAGTGA 947
||| | ||||| |||| || ||||||||||||||| || ||||| | |||||
Sbjct 806 ATC-GTAATGCCCAGAATGGCTTTGAAATGGCCAAGCATTGGAGGTCAGAGTGA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5