BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59230.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 760 0.0
Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462 76.8 4e-13
> Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850
Length=1569
Score = 760 bits (411), Expect = 0.0
Identities = 513/562 (91%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 432 CAAGTCACTGGTTAGGCTGAGAATA-GAGGCTAGAAATGGTCTCGCCTTTGGAAGTCTCG 490
|||||| ||||||| |||||||||| || || ||||||||||||||| ||||| |||||
Sbjct 762 CAAGTCGCTGGTTAAGCTGAGAATAGGA-GCCAGAAATGGTCTCGCCGTTGGAGGTCTCA 820
Query 491 TCATTG-ACGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTATCTTGATTCGGTT 549
||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 821 TCA-TGAAAGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTGTCTTGATTCGGTT 879
Query 550 GAGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCTGGTTGTCATGTGCTTGAG 609
| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 880 GTGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCAGGTTGTCATGTCCTTGAA 939
Query 610 GAATTAGTTATGATTGAT-GTGGTGTGGAATTTTTGGGAGTCTTGCTCTGCGTCTATCCC 668
|||||| | || || || | || |||||||||||||||| |||||||| |||||||||
Sbjct 940 CAATTAGCTCTGGTTAATCTTAGT-TGGAATTTTTGGGAGTATTGCTCTGTGTCTATCCC 998
Query 669 AACCCTCAAGAGACTAACGTTTTTTACCGAGGAGGGTTGGAACAACCCACCACCGAGTGT 728
|||||||||||||||||||| || || ||||||| ||||| ||||||||||||||||||
Sbjct 999 AACCCTCAAGAGACTAACGTGTTGTATTGAGGAGGATTGGATCAACCCACCACCGAGTGT 1058
Query 729 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCATTAAAGTA 788
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1059 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCGTTAAAGTA 1118
Query 789 TGAAAAAGTGAATTTCGATTCGCTTGTTGAAGCTAGGCTCGGTCTTCGAGTGGGATATGA 848
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1119 CGAAAAAGTGAATTTCGATTCGCTCGTTGAAGCTAGGCTCGGTCTTCGAGTGGCATATGA 1178
Query 849 AGAGTCAGAAAATCCAATACAAGT-CCCTTTTGGCTTCCCCTTCCCACTTATAGAATATG 907
|||| |||||||||||||| | || |||| |||| ||||||||||| ||||||||||||
Sbjct 1179 AGAGACAGAAAATCCAATAGA-GTTCCCTGATGGCATCCCCTTCCCAGTTATAGAATATG 1237
Query 908 CTATGGTCGGTGATGCAACTGATCTACTTATGGGAATACGCAATGTTCAGGTTCTTTACT 967
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1238 TTACGGTCGGTGATGCAACTGATCTACTTATGGGATTACGCAATGTTCAGGTTCTTTACT 1297
Query 968 TATATGCGAGCACTGTTGAGGT 989
|||||||||||||| |||||||
Sbjct 1298 TATATGCGAGCACTCTTGAGGT 1319
Score = 414 bits (224), Expect = 8e-115
Identities = 244/254 (96%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 1223 AGGTTCTAGAGATATTGAAGTTTGGGGAAATTAATGACAAGACAGAATTAGAGCAAACCA 1282
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1316 AGGTTCTAAAGATATTGAAGTTTGGGGAAGTTAATGACAAGACAGAATTAGAGCAAATCA 1375
Query 1283 AGCACTTCTTGGAGTTAATGCCGCATCTTGAACAGCTCAATATATACTACGATACATCAG 1342
|||| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1376 AGCATTTCTTGGAATCAATGCCGTTTCTTGAACAGCTCAATATATACTACGATACATCAG 1435
Query 1343 TTGACGATAACCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1402
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTGACGATAATCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1495
Query 1403 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTGTCAGTTACTTTACCCTCTT 1462
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1496 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTCTCAGTTACTTTACCCTCTT 1555
Query 1463 CCTCATCGATTTAA 1476
||||||||||||||
Sbjct 1556 CCTCATCGATTTAA 1569
Score = 69.4 bits (37), Expect = 7e-11
Identities = 48/53 (91%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 1200 TTGCCTATCATCAAGTCCGGTGAAGGTTCTAGA-GATATTGAAGTTTGGGGAA 1251
|||||||||||||||||||||||||||||| || |||| | |||||||| |||
Sbjct 336 TTGCCTATCATCAAGTCCGGTGAAGGTTCT-GAAGATACTCAAGTTTGGCGAA 387
> Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462
Length=1167
Score = 76.8 bits (41), Expect = 4e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1190 ATATTCATACTTGCCTATCATCAAGTCCGGTGAAGGTTCTAGAGATATTGAAGTTTGGGG 1249
||||| || |||||||||||||||||||||||||||| || |||||||||| ||||| |
Sbjct 869 ATATTGATGTTTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTG 928
Query 1250 AA 1251
||
Sbjct 929 AA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5