BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59230.1 Length=1476 Score E Sequences producing significant alignments: (Bits) Value Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 760 0.0 Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462 76.8 4e-13 > Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 Length=1569 Score = 760 bits (411), Expect = 0.0 Identities = 513/562 (91%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 432 CAAGTCACTGGTTAGGCTGAGAATA-GAGGCTAGAAATGGTCTCGCCTTTGGAAGTCTCG 490 |||||| ||||||| |||||||||| || || ||||||||||||||| ||||| ||||| Sbjct 762 CAAGTCGCTGGTTAAGCTGAGAATAGGA-GCCAGAAATGGTCTCGCCGTTGGAGGTCTCA 820 Query 491 TCATTG-ACGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTATCTTGATTCGGTT 549 ||| || | ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 821 TCA-TGAAAGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTGTCTTGATTCGGTT 879 Query 550 GAGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCTGGTTGTCATGTGCTTGAG 609 | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 880 GTGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCAGGTTGTCATGTCCTTGAA 939 Query 610 GAATTAGTTATGATTGAT-GTGGTGTGGAATTTTTGGGAGTCTTGCTCTGCGTCTATCCC 668 |||||| | || || || | || |||||||||||||||| |||||||| ||||||||| Sbjct 940 CAATTAGCTCTGGTTAATCTTAGT-TGGAATTTTTGGGAGTATTGCTCTGTGTCTATCCC 998 Query 669 AACCCTCAAGAGACTAACGTTTTTTACCGAGGAGGGTTGGAACAACCCACCACCGAGTGT 728 |||||||||||||||||||| || || ||||||| ||||| |||||||||||||||||| Sbjct 999 AACCCTCAAGAGACTAACGTGTTGTATTGAGGAGGATTGGATCAACCCACCACCGAGTGT 1058 Query 729 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCATTAAAGTA 788 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1059 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCGTTAAAGTA 1118 Query 789 TGAAAAAGTGAATTTCGATTCGCTTGTTGAAGCTAGGCTCGGTCTTCGAGTGGGATATGA 848 ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1119 CGAAAAAGTGAATTTCGATTCGCTCGTTGAAGCTAGGCTCGGTCTTCGAGTGGCATATGA 1178 Query 849 AGAGTCAGAAAATCCAATACAAGT-CCCTTTTGGCTTCCCCTTCCCACTTATAGAATATG 907 |||| |||||||||||||| | || |||| |||| ||||||||||| |||||||||||| Sbjct 1179 AGAGACAGAAAATCCAATAGA-GTTCCCTGATGGCATCCCCTTCCCAGTTATAGAATATG 1237 Query 908 CTATGGTCGGTGATGCAACTGATCTACTTATGGGAATACGCAATGTTCAGGTTCTTTACT 967 || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1238 TTACGGTCGGTGATGCAACTGATCTACTTATGGGATTACGCAATGTTCAGGTTCTTTACT 1297 Query 968 TATATGCGAGCACTGTTGAGGT 989 |||||||||||||| ||||||| Sbjct 1298 TATATGCGAGCACTCTTGAGGT 1319 Score = 414 bits (224), Expect = 8e-115 Identities = 244/254 (96%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 1223 AGGTTCTAGAGATATTGAAGTTTGGGGAAATTAATGACAAGACAGAATTAGAGCAAACCA 1282 |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1316 AGGTTCTAAAGATATTGAAGTTTGGGGAAGTTAATGACAAGACAGAATTAGAGCAAATCA 1375 Query 1283 AGCACTTCTTGGAGTTAATGCCGCATCTTGAACAGCTCAATATATACTACGATACATCAG 1342 |||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1376 AGCATTTCTTGGAATCAATGCCGTTTCTTGAACAGCTCAATATATACTACGATACATCAG 1435 Query 1343 TTGACGATAACCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1402 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 TTGACGATAATCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1495 Query 1403 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTGTCAGTTACTTTACCCTCTT 1462 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1496 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTCTCAGTTACTTTACCCTCTT 1555 Query 1463 CCTCATCGATTTAA 1476 |||||||||||||| Sbjct 1556 CCTCATCGATTTAA 1569 Score = 69.4 bits (37), Expect = 7e-11 Identities = 48/53 (91%), Gaps = 2/53 (4%) Strand=Plus/Plus Query 1200 TTGCCTATCATCAAGTCCGGTGAAGGTTCTAGA-GATATTGAAGTTTGGGGAA 1251 |||||||||||||||||||||||||||||| || |||| | |||||||| ||| Sbjct 336 TTGCCTATCATCAAGTCCGGTGAAGGTTCT-GAAGATACTCAAGTTTGGCGAA 387 > Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462 Length=1167 Score = 76.8 bits (41), Expect = 4e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 1190 ATATTCATACTTGCCTATCATCAAGTCCGGTGAAGGTTCTAGAGATATTGAAGTTTGGGG 1249 ||||| || |||||||||||||||||||||||||||| || |||||||||| ||||| | Sbjct 869 ATATTGATGTTTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTG 928 Query 1250 AA 1251 || Sbjct 929 AA 930 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55230855250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5