BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59240.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 494 1e-138
Ahg952110 jgi|Araly1|952110|scaffold_3700005.1 187 2e-46
Ahg947096 jgi|Araly1|947096|scaffold_703325.1 100 3e-20
Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847 87.9 2e-16
Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462 82.4 9e-15
Ahg906135 jgi|Araly1|906135|Al_scaffold_0003_3263 78.7 1e-13
> Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850
Length=1569
Score = 494 bits (267), Expect = 1e-138
Identities = 326/353 (92%), Gaps = 10/353 (3%)
Strand=Plus/Plus
Query 1060 GGACTCCATCACAGATC-TACAAGTAAATGTCAGGACACTGACGGGTGTCTATGCAAGTC 1118
||||||||||||| | | ||||| ||||||| ||||| ||||||||||||||||||| ||
Sbjct 259 GGACTCCATCACA-AACATACAATTAAATGTGAGGACGCTGACGGGTGTCTATGCAAATC 317
Query 1119 TTCAAAGGACATTCGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAA 1178
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTCAAAGGAAATTTGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAA 377
Query 1179 GTTTGGCGAAGTTGCTTCTTACTTTGGTGACGAGGAAAAGCAGCTGGAGTTAGTCAAGTA 1238
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 378 GTTTGGCGAAGTTTCTTCTTACTTTGATGACGAGGAAAAGCAGCTGGAGCTAGTCAAGTA 437
Query 1239 TTTCCTGGAGACAATGCCGAATCTTGAACAAATGATATTGCACTACAATACACGAATT-A 1297
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 438 TTTCCTGGAGACAATGCCGAATCTTGAACAGATGATATTGTGTTACAATACACGAATTGA 497
Query 1298 GTGAAGGTGTGAAAAGTCAACTTGACTGGCTAGTTCCTAGAGTATCTTCATCCAAGTGTA 1357
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 498 -TGAAGGTGTGAAAAGTCAACTTGAGAGGCTAGTTCCTAGAGTATCTTCATCGAAGTGTA 556
Query 1358 GTGTCCAACTAATCTGTGATAAC------GCACCAACTTATCCTTTCTATGGT 1404
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 557 GTGTCCAACTAATCTGTGATAACTTCATCGCACCAACTTATCCTTTCTATGGT 609
> Ahg952110 jgi|Araly1|952110|scaffold_3700005.1
Length=444
Score = 187 bits (101), Expect = 2e-46
Identities = 267/345 (77%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 14 GTTGCAAAGATATAATCAGCGA-TCTACCAGAAGCTCTTATTTGCCACTTACT-GTCCT- 70
||| |||||||||||||||| | |||||||||| ||||||||||||| | || ||| |
Sbjct 32 GTTCCAAAGATATAATCAGC-ACTCTACCAGAACCTCTTATTTGCCAAAT-CTTGTCTTG 89
Query 71 TCGTTCCCACAAAAGAAGCTGCTTTAACATCACTTCTCTCCGAAAAA-TGGCGTTATCTC 129
|| |||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||
Sbjct 90 TC-TTCCCACAAAAGAAGCTGCTTTAACATCGCTTCTCTC-GAAAAAATGGCGGTATCTC 147
Query 130 TTTGCTTTTGCACCAATTCTTGA-TTTCGATGA-T--TCGGTATGGATGCAAAGTCCATT 185
|||||||| |||||| |||||| ||| ||| | | ||||||| |||| | | |
Sbjct 148 TTTGCTTTCACACCAAATCTTGAGTTT-GATTACTCCTCGGTATATCTGCATATTGAAGA 206
Query 186 GGTTTA--CATGAATG-A-G-G-TTCATAGAAAGTTCATGGATTTCGTGGATAGAGTATT 239
|| | | || || | | | | ||||||||| ||| | ||||||||||||||||||||
Sbjct 207 GGGTAAAGCAAAAAAGGATGAGATTCATAGAATGTTTACAGATTTCGTGGATAGAGTATT 266
Query 240 GGGTTTGCAGGGTAATTCCACTCTAGTTAGGTTCTCACTCAACTGTCGAAATGGTATTGA 299
|| |||||| | ||||| |||| | || |||||| |||| ||| || || | ||||
Sbjct 267 GGCTTTGCAAGCAAATTCTACTCCAAATAAGTTCTCTTTCAAGTGTGGACCTGATGTTGA 326
Query 300 TCGAGAATGCATCTTTAGATGGATATCAAATGTGATAGAACGTGG 344
|| || || || || | ||||||| || ||| | ||||||||
Sbjct 327 TCCAGTTTGTGTCATTCGTTGGATATTAACCGTGTTGGAACGTGG 371
> Ahg947096 jgi|Araly1|947096|scaffold_703325.1
Length=379
Score = 100 bits (54), Expect = 3e-20
Identities = 129/165 (78%), Gaps = 6/165 (4%)
Strand=Plus/Plus
Query 1130 TTCGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAAGTTTGGCGAAG 1189
|||||| ||| |||| |||||||||||||||||||||||||||| | |||||||| |||
Sbjct 205 TTCGTAATTGTCTATTATCAAGTCCGGTGAAGGTTCTGAAGATATTTAAGTTTGGTGAAA 264
Query 1190 TT-GCTTCTTACTTTGGTGACG-AGGAAAAGCAGCTGGAGTTAG-TCAAGTATTTCCTGG 1246
|| | | | || || || || | ||||| | ||| || ||||| | |||||
Sbjct 265 TTTG-TGATGACGATGAAAACATAG-AGGAGCAGATCGAGC-AGGTCAAGCACTTCCTAA 321
Query 1247 AGACAATGCCGAATCTTGAACAAATGATATTGCACTACAATACAC 1291
|||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 322 AGACAACGCCGAATCTTGAACAAATGATATTGTGCTAGGATACAC 366
> Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847
Length=1437
Score = 87.9 bits (47), Expect = 2e-16
Identities = 325/452 (72%), Gaps = 48/452 (11%)
Strand=Plus/Plus
Query 404 TCTTTGTGAGCAAGTCACTTGTTAAGCTGAGAA-TACGAACTGAAAAT--TGT-A--C-C 456
|||||||||| ||| | || |||||||||| || || || | | |||| | | | | |
Sbjct 410 TCTTTGTGAGTAAGACTCTGGTTAAGCTGA-AATTAGGACCGGCAAATGATCTCACTCTC 468
Query 457 ATCATTGATTTGG-AAGATGTTTTTCTTCCAAAGCTTAAGACTCTCGATCTT-AGTAGTA 514
| |||||| | || ||||||||||||||||||||||||||||||| ||||| | || |
Sbjct 469 ACCATTGA-TAGGAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGA-TACTG 526
Query 515 TTT-GGTTTCGAGA-CGGTGATACTTGCCTTC-TCAAGCT-CATTTCTGGATGTCAAGTC 570
|| |||| | ||| || || | ||| || | ||||| | | ||||| |||| ||
Sbjct 527 TTGAGGTT-CAAGAGCG-TGGTT-TTGGTTTTGTAAAGCTTC-TCTCTGGCTGTCCCGTG 582
Query 571 CTTGAGGATTTAACTATGAGTGATCTAT-GG-TGGGATGGTTATTGGAACC---GCTCTA 625
|| ||||| ||| | ||| ||| ||| || ||||| | ||||| |||||
Sbjct 583 CTCGAGGAGTTAGTTCTGA-TGAA-TATCGGGTGGGAAA---ACTGGAAGTTTTGCTCTG 637
Query 626 TGTCT-TCCAAAACCCTCAAGAGACTAACGGTACAT-TGTTCAGACTGGGAT-AGAAGTC 682
||||| | |||||||||||||| || ||| | | ||| |||| | || |||| ||
Sbjct 638 TGTCTGTT-AAAACCCTCAAGAGGCTGACGTTTT-TCTGTGAAGACAGTTATGAGAA-TC 694
Query 683 CGG-GTAGTATTTCATTTGACACGCCAAATCTTGTCTACTTTGAATACTT-TGAT-CTCG 739
| | || | |||||||| || ||||| ||||| ||| | ||||| || |||| ||
Sbjct 695 CAAAG-AGCGTGTCATTTGATACTCCAAACCTTGTTTACCTAGAATA-TTCTGATGCTA- 751
Query 740 TTGCGGACAAGTATG-AAGTAGTGAA-TTTCGACTCACTTGTTGAAGCT-AGTATCGGTC 796
|||||| ||||||| || |||||| ||| | || || ||||||||| | ||| ||||
Sbjct 752 TTGCGGGCAAGTATCCAAA-AGTGAACTTTA-ATTCGCTCGTTGAAGCTCA-TATTGGTC 808
Query 797 TTCGAATGAGACATCATCAGCGTGCACATGCA 828
||||| ||| | | ||||| ||| | |||||
Sbjct 809 TTCGACTGACAGAAGATCAGAGTGGAGATGCA 840
> Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462
Length=1167
Score = 82.4 bits (44), Expect = 9e-15
Identities = 194/262 (74%), Gaps = 27/262 (10%)
Strand=Plus/Plus
Query 1137 TTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAAGTTTGGCGAAGTTGCTTC 1196
|||||||||||||||||||||||||||| | |||||| | || ||||| |||| | | |
Sbjct 879 TTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTGAAGAAGATAC 938
Query 1197 TTACTTTG--G----TGACGAGGAAAAGC-AGCTGGAGTTAGTCAAGTATTTCCTGGAGA 1249
| | |||| | || | ||| ||| | || || |||||| | ||||| ||||
Sbjct 939 TGAATTTGAAGAAAATGTGGCGGATAAGATAA-TGCAG---GTCAAGCAATTCCTAGAGA 994
Query 1250 CAATGCCGAATCTTGAACAAATGATATTGCACTACAATACACGAATTAG-T-GAAGGTGT 1307
|||||||| | || |||||| |||| ||| |||||||||||| | || | |||| |||
Sbjct 995 CAATGCCGGAGCTCGAACAAGTGATGTTGTACTACAATACACCAG--AGGTTGAAGATGT 1052
Query 1308 GA--AAAGTCAA-CTTG-A-CTGGCT-A-G-TTCCTAGAGTATCTTCATCCAAGTGT-AG 1358
|| ||||| | | | | || | | | ||||||||||| ||||| |||||||| ||
Sbjct 1053 GATGAAAGT-ATTCAAGGAACTT-CAGAAGCTTCCTAGAGTAGCTTCAGCCAAGTGTGAG 1110
Query 1359 TGTCCAACTAATCTGTGATAAC 1380
||||| |||||| |||||||
Sbjct 1111 A-TCCAAATAATCTCTGATAAC 1131
> Ahg906135 jgi|Araly1|906135|Al_scaffold_0003_3263
Length=792
Score = 78.7 bits (42), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 1214 AAAAGCAGCTGGAGTTA-GTCAAGTA-TTTCCTGGAGACAATGCCGAATCTTGAACAAAT 1271
|||||||| | ||| | |||||| | ||| || ||||||||||||||||||||||||||
Sbjct 575 AAAAGCAGATAGAG-CAGGTCAAGCACTTT-CTAGAGACAATGCCGAATCTTGAACAAAT 632
Query 1272 GATATTGCACTACAATACAC 1291
|||||| ||||| ||||||
Sbjct 633 GATATTATACTACGATACAC 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5