BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59260.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945 1221 0.0
Ahg486390 jgi|Araly1|486390|fgenesh2_kg.5__2382__AT3G59220.1 686 0.0
> Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945
Length=858
Score = 1221 bits (661), Expect = 0.0
Identities = 766/817 (94%), Gaps = 6/817 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGTTATGGTACTGTCGTTAGGCAAGGCATCACCAAGTAAGAGTGACCATGAGTTA 60
|||||||| ||||| |||| ||||| | |||||||||| ||||||||||| |||||
Sbjct 47 ATGAAGGTGATGGTGCTGTTGTTAGACGAGGCATCACC----AAGAGTGACCAAGAGTTG 102
Query 61 TTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 TTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGAT 162
Query 121 CATCCTCACAGAGGTTTTGAAAGTGTTACATACATGTTCCAGGGAGGCATCATTCACCAA 180
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 163 CATCCTCACAGAGGTTTTGAAAGTGTCACATACATGTTGCAAGGAGGCATCATTCACCAA 222
Query 181 GACTGTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAGGA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GACTTTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAGGA 282
Query 241 AGAGGAATCATTCATTCGGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTTGG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTTGG 342
Query 301 ATCAACCTCCCTTCTAGTGCCAAAATGATCGAGCCTAAAAATATAGAAATCTCGAGTTCA 360
|||||||||||||| |||| ||||||||| |||||||||||| |||| || |||||||||
Sbjct 343 ATCAACCTCCCTTCCAGTGACAAAATGATGGAGCCTAAAAATCTAGATATGTCGAGTTCA 402
Query 361 GAGATACCTAGCGCAGATGACTATGGAGTAGAGGTCAAAGTCATTGCTGGAGAGTCAATG 420
||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 403 GAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGGAGAGTCAATG 462
Query 421 GGAGTCAAATCTCCTTTCTACACAAAAACACCAATCATGTTCCTAGACTTTACGCTCGAT 480
||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 463 GGAGTCAAATCTCCTTTCTACACAAAAACACCAGTCATGTTCCTGGACTTTACTCTCGAT 522
Query 481 CCAAAAGCTCAAACCCACCAGGCCGTTCCAGAGTCATGGACCGCCTTTGCCTACATTGTA 540
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 523 CCAAGAGTTCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTTGCCTACATTATA 582
Query 541 GAAGGCGATGAAGGCGTTTTTAGCTCCTCGGACTCTTCCACAGTACAAGCACATAATGTT 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GAAGGCGATGAAGGCGTGTTTAGCTCCTCGGACTCTTCCACAGTACAAGCACATAATGTT 642
Query 601 GTGGTGTTTGGGACAGGGGATGAAGTTAGCGTGTGGAACACGTCAAACTCTAGGCCGTTG 660
||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 643 GTGGTGTTTGGAACAGGGGACGAAGTTAGCGTGTGGAACACGTCAAGCTCTAGATCGTTG 702
Query 661 AGGTTCTTGTTGATTGCAGGGGAACCGATAGGCGAGCCTGTGGTTCAGCATGGGCCATTT 720
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 703 AGGTTCTTGTTGATTGCAGGGGAACCGATTGGCGAGCCTGTGGTTGAGCGTGGGCCATTT 762
Query 721 GTGATGAACTCACAGGATGAGATTGAAATGACAATTGGGGACTATCGTAATGGC-ATGAA 779
|||||||||||||| | ||||||||| ||||| ||| ||||||||||||||| | | |||
Sbjct 763 GTGATGAACTCACAAGCTGAGATTGATATGACGATTAGGGACTATCGTAATGCCCA-GAA 821
Query 780 TGGCTTCGAAATGGCCAAGCATTGGAGGTCAGAGTGA 816
|||||| ||||||||||||||||||||||||||||||
Sbjct 822 TGGCTTTGAAATGGCCAAGCATTGGAGGTCAGAGTGA 858
> Ahg486390 jgi|Araly1|486390|fgenesh2_kg.5__2382__AT3G59220.1
Length=991
Score = 686 bits (371), Expect = 0.0
Identities = 680/827 (82%), Gaps = 30/827 (4%)
Strand=Plus/Plus
Query 3 GAAGGTTATGGTACTGTCGTTAGGCAA-GGCATCACCAAGTAAGAGTGACCATG-AGTTA 60
|||||| | || ||||||||| | || ||||||| | || ||| |||||| | |||||
Sbjct 73 GAAGGTGAAGGCGCTGTCGTTA-GAAACGGCATCA-C-AG--AGATTGACCA-GAAGTTA 126
Query 61 TTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTC-CTGGTGGATTCAAAGA 119
|||||||||||||| | |||||||||||||||| ||||| ||| | | ||||||| |||
Sbjct 127 TTGGACCCGTTCGTGTTGCTAGTTGAATTTTCCCTTTCA-CTCTCAGCTGGATTCCCAGA 185
Query 120 TCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGTTCCAGGGAGGCATCATTCACCA 179
||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| |
Sbjct 186 TCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGCTACAAGGAGGTATCATTCACAA 245
Query 180 AGACT-GTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAG 238
||| | || ||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 246 AGA-TCCCAAAGGTCATAAAGGTACAATCCAAGCCGGAGATGTTCAGTGGATGACAGCAG 304
Query 239 GAAGAGGAATCATTCATTCGGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTT 298
||||||||||||||||||| ||| | || |||||| ||||||||| || ||||||||||
Sbjct 305 GAAGAGGAATCATTCATTCTGAATTTCCGGAAGAAGAAGTCAACACTGGTTTACAGCTTT 364
Query 299 GGATCAACCTCCCTTCTAGTGCCAAAATGATCGAGCCTAAAA-ATATAGAAATCTCGAGT 357
||||||| |||||||| | || ||||||||| || || |||| ||| |||| |||| |||
Sbjct 365 GGATCAATCTCCCTTCCACTGACAAAATGATTGAACC-AAAATATAAAGAACTCTCAAGT 423
Query 358 TCAGAGATACCTAGCGCAGATGACTATGGAGTAGAGGTCAAAGTCATTGCTGGAGAGTCA 417
||| | || || | ||||| || | |||||||| ||||||||| | || ||||| |||
Sbjct 424 TCAAACATCCCGCGAGCAGAAGAAAAAGGAGTAGAAGTCAAAGTCCTAGCCGGAGATTCA 483
Query 418 ATGGGAGTCAAATCTCCTTTCTACACAAAAACACCAATCA-TGTTCCTAGACTTTACGCT 476
|||||| |||||||||| ||||||||| |||||||| || ||||||| |||||||| ||
Sbjct 484 ATGGGAATCAAATCTCCAGTCTACACAAGAACACCAA-CAATGTTCCTTGACTTTACCCT 542
Query 477 CGATCCAAAAGCTCAAACCCACCAGGCCGTTCCAGAGTCATGGACCGCCTTTGCCTACAT 536
| | ||| | |||||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct 543 CAAGCCAGGATCTCAAACCCACCAGACCGTTCCAGAATCTTGGACCGCTTTTGCCTACAT 602
Query 537 TGTAGAAGGCGATGAAGGCGTTTTTAGCTCCTCGGACTCTTCCAC-AGTA-CAAGCACAT 594
| ||||||||||||| || || || | || | | |||||||| | | || | || |||
Sbjct 603 TATAGAAGGCGATGAGGGTGTGTTCGGTTCGTTGAACTCTTCCGCTA-TATCC-GCGCAT 660
Query 595 AATGTTGTGGTGTTTGGGAC-AGGGGATGAAGTTAGCGTGTGGAACACGTCAAACT-CTA 652
||||||| |||||||| || ||||||| ||||||||||||||||| ||||| || | |
Sbjct 661 CATGTTGTTGTGTTTGG-ACCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAA-CTTCGA 718
Query 653 GGCCGTTGAGGTT-CTTGTTGATTGCAGGGGAACCGATAGGCGAGCCTGTGGTTCAGCAT 711
|| |||||||||| || ||||||||||||||||||||| || ||||||||||||||| |
Sbjct 719 GGTCGTTGAGGTTTCT-GTTGATTGCAGGGGAACCGATCGGTGAGCCTGTGGTTCAGTGT 777
Query 712 GGGCCATTTGTGATGAACTCACAGGATGAGATTGAAATGACAATTGGGGACTATC-GTAA 770
|| || ||||||||||| || |||| ||||| || ||| | ||| ||||||| | ||
Sbjct 778 GGTCCGTTTGTGATGAATTCGCAGGCGGAGATCGATATGGCTTTTGATGACTATCAG-AA 836
Query 771 TGGC-ATGAATGGCTTCGAAATGGCCAAGCATTGGAGGTCAGAGTGA 816
|| | | ||| || || |||||||||||| || ||||||| |||||
Sbjct 837 TG-CTAAGAACGGGTTTGAAATGGCCAAGTGTTAGAGGTCACAGTGA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5