BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59270.1

Length=1008
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg898887 jgi|Araly1|898887|Al_scaffold_0005_2853                    721    0.0  


> Ahg898887 jgi|Araly1|898887|Al_scaffold_0005_2853
Length=879

 Score =  721 bits (390),  Expect = 0.0
 Identities = 490/538 (91%), Gaps = 8/538 (1%)
 Strand=Plus/Plus

Query  1    ATGAATCTCGATTTTGATGACTCTAAGCGTATGCATTATGGAGTGACAAAACAAGAAAGG  60
            |||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  1    ATGAATCTTGAATTTGATGACTCAAAGCGTATGCATCATGGAGTGACAAAACAAGAAAGG  60

Query  61   GTTAAGATGCTCCAACGTTTCATAAAGCGTGTGGATGGTAAATTGGCTTTGTGTAAGAAT  120
            | |||||| || | |||||| |||||| | |||||||||||||||||||||  |||||||
Sbjct  61   GATAAGATTCTTCGACGTTTTATAAAGTGCGTGGATGGTAAATTGGCTTTGCATAAGAAT  120

Query  121  GTTCCTTTGAACAGATTCTCCATCAAGTGTAAAGATGACGTTGGACCTGCTCCTGTCATT  180
            ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct  121  GTTCCTTTGAACAGATTCTCCATCAAGTGTAAAGACGATGTTGGACCAGCTCCTGTCATT  180

Query  181  GGTTGGATAACCAATGTGTTGAAACGTCGTGTATCAGAACTTGCACTAGACATCTCTTCA  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  181  GGTTGGATAACCAATGTGTTGAAACGTCGTGTATCAGAACTTGCTCTAGACATCTCTTCT  240

Query  241  TGTTGGGATTGGCCTATGTCTACAGCGATTGATGGGTGCAATACTATGGTTCAGGAATTT  300
            |||||||||||||||||||||||||| ||||||||||||  ||| |||||||| ||||||
Sbjct  241  TGTTGGGATTGGCCTATGTCTACAGCTATTGATGGGTGCGGTACAATGGTTCAAGAATTT  300

Query  301  TGGGAGTCTTGTTCTGTATCTAGCACAAGCCTCAAGAGACTAACGTATCTTAAAGC-GAA  359
            ||||| ||||| ||||||||||||||||||||||| |||||||||| |      || |||
Sbjct  301  TGGGAATCTTGCTCTGTATCTAGCACAAGCCTCAAAAGACTAACGT-T------GCCGAA  353

Query  360  TTTTGATTCGCTTGTTGAAGCTCGTCTTGATCTTCAAATGACACATGATCAGATCCATAA  419
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  354  TTTTGATTCGCTTGTTGAAGCTCGTCTCGATCTTCAAATGACACATGATCAGATCCATAA  413

Query  420  GGCCAAATTTTCAGCGGATGATCCAATCCAGCATGAGGGGTTGGTTGGTAATGCAACTGt  479
            ||| |||||||| | |||||||  |||| ||||||| ||| ||||||| |||||||||||
Sbjct  414  GGCAAAATTTTCTGAGGATGATTTAATCAAGCATGAAGGGATGGTTGGCAATGCAACTGT  473

Query  480  ttttttCATTGGAATTTGTAATGTTAGGTCCCTTTACTTATCTTACAACACTCTTGAG  537
            |||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct  474  TTTTTTTATTGGAATTTGTAATGTTAAGTCCCTCTACTTATCTGACAACACTCTTGAG  531


 Score =  538 bits (291),  Expect = 3e-152
 Identities = 335/356 (94%), Gaps = 3/356 (1%)
 Strand=Plus/Plus

Query  653   TTGAAGGACTTCTCCACAGATATGATATGAAATGTCAAAGCAGTGACGAGTGCCTGTGCA  712
             |||| |||||||||||||||||||||||||||||||   | |||||||||||||||||||
Sbjct  527   TTGAGGGACTTCTCCACAGATATGATATGAAATGTC---GAAGTGACGAGTGCCTGTGCA  583

Query  713   AACCTTGGGAGGAGGAGAACATTCCCACTTGTCTATCATTAAGTCCTGTGAAGGTCTTAA  772
             ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  584   AACCTTGGGAGGAGGAGGACATTCCCACTTGTCTATCATCAAGTCCTGTGAAGGTATTAA  643

Query  773   AGATAATGAAGTTTGGAGATATCGATGAAGATGAGGACATGGACAAAATGATGGATCAAG  832
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  644   AGATAATGAAGTTTGGAGATATCTATGAAGATGAGGACATGGACAAAATGATGGACCAAG  703

Query  833   TCGAGTACTTCCTTGAGACAATGCCTAATCTTGAACAACTCATAATTCACTACGAAACAT  892
             ||||||||||||||||||||||||| ||||||||||| || ||||| || ||||||||||
Sbjct  704   TCGAGTACTTCCTTGAGACAATGCCGAATCTTGAACATCTTATAATACATTACGAAACAT  763

Query  893   CAATTGACGAAGATGTGGAGGAAGTATTAAGCCAATTTCAGATGGTTCCTAGAGAAGGTT  952
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  764   CTATTGACGAAGATGTGGAGGAAGTATTAAGCCAATTTCAGATGGTTCCTAGAGAAGGTT  823

Query  953   TAACCGAGTGCAGAATTCAAGTAATCTCTGACAATCTTGTCTTGTCCTCTATTTAA  1008
             ||||||||||||| ||||||||||||||||| ||||||| |||||| |||| ||||
Sbjct  824   TAACCGAGTGCAGGATTCAAGTAATCTCTGAGAATCTTGACTTGTCATCTAATTAA  879



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37474827411


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5