BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59280.1

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938942 jgi|Araly1|938942|scaffold_503133.1                        630    4e-180


> Ahg938942 jgi|Araly1|938942|scaffold_503133.1
Length=392

 Score =  630 bits (341),  Expect = 4e-180
 Identities = 375/391 (96%), Gaps = 3/391 (1%)
 Strand=Plus/Plus

Query  186  ATCAATTAATCGGCTGCCATGGCT-GGGAGACTACTTGCAAATTTGATTGTGATGGGTTC  244
            |||||  ||||||||||||||| | |||||| |||||||||| |||||||||||||||||
Sbjct  4    ATCAAGCAATCGGCTGCCATGG-TGGGGAGATTACTTGCAAACTTGATTGTGATGGGTTC  62

Query  245  TGGGATCATTGGTCGTGCTGTCTTTCAAGCCTATCGTCAAGCACTTGCTAATGCGTCTAA  304
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  63   TGGGATCATTGGTCGTGCCGTCTTTCAAGCCTATCGTCAAGCACTTGCTAATGCGTCTAA  122

Query  305  ATCTGGTGTTGCGCAGGAAGCAATGCAAAATGGAGTACGTCAAGCAGGGAAAGCCATCAC  364
            |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  123  ATCTGGTGTTGCTCAGGAAGCAATGCAAAATGGAGTACGTAAAGCAGGGAAAGCCATCAC  182

Query  365  TGAGCAAGAGGCTAGGCAGATTCTTGGTGTAACCGAGAAGACCTCTTGGGAAGAGATATT  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  TGAGCAAGAGGCTAGGCAGATTCTTGGTGTAACCGAGAAGACCTCTTGGGAAGAGATATT  242

Query  425  ACAGAAATATGACAAACTGTTTGAGAATAATGCGAAAGCAGGGAGCTTTTACCTTCAATC  484
             |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  243  GCAGAAATATGACAAACTGTTTGAGAATAATGCCAAAGCTGGGAGCTTTTACCTTCAATC  302

Query  485  TAAAGTTCATCGAGCCAAAGAATGTCTAGAAGTTGTGTACAGAAGCCAAGGCAACGGTAC  544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  TAAAGTTCATCGAGCCAAAGAATGTCTAGAAGTTGTGTACAGAAGCCAAGGCAACGGTAC  362

Query  545  ACCTAGTTAAGACCTTACTCTTTTTGTTTTC  575
            ||||||||||||||||| || || | |||||
Sbjct  363  ACCTAGTTAAGACCTTAATCGTTAT-TTTTC  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33624412794


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5