BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59300.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486397 jgi|Araly1|486397|fgenesh2_kg.5__2389__AT3G59300.1 3437 0.0
> Ahg486397 jgi|Araly1|486397|fgenesh2_kg.5__2389__AT3G59300.1
Length=2383
Score = 3437 bits (1861), Expect = 0.0
Identities = 2257/2437 (93%), Gaps = 71/2437 (3%)
Strand=Plus/Plus
Query 1 AAAGAAAGCTGAAAGTTTCTGAAGTCTCTCTGCAACATTTAATAGATGCGACAGTAAACA 60
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAGAAAGCTGAAAGTTTCTGAAG--TCTCTGCAAAATTTAATAGATGCGACAGTAAACA 58
Query 61 TAAGAACACCAAACAAAAACGTGATCAGCGACGGCAACGAAGACGGCGAAGAATACGGCG 120
|||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 59 TAAGAACACCAAACAAAAACGTGATCAGCGACGGCAACGAAGACGGCG--G---AC-AC- 111
Query 121 GACACGAGGATTCCCAACGATCAGATTCTTTGACATTCCACGGCGGCTTAGATATCAGCT 180
| || | |||||||||||||||||||||||||||| |||||||||| || | ||||||
Sbjct 112 G-CA--A--ATTCCCAACGATCAGATTCTTTGACATTTCACGGCGGCTGAGCTTTCAGCT 166
Query 181 TCTCCGATCCGCTCTCTCTGTTTGTGTAAATCATGGTGATCGCGGCTGCTTCCTCTTTTT 240
||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 167 TCTCCGATCCGGTCCCTCTGTTTGTGTAAATTATGGTGATCGCGGCTGCTTCTTCTTTTT 226
Query 241 CCCTCGGTCCATCTCATTGCCATCAATCTTACACGGATGAGTTCTCTTCCTCCATACCTT 300
||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 227 CCCTCGGAGCATCTCATTGTCATCAATCTTACGCGGATGAGTTCTCTTCATCCATACCTT 286
Query 301 ACAAAAGAACCAGCAATGCAAGAAATCGTGTGTTTGATGGATGTGGCTCTGCTAATCTCT 360
||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 287 ACAAAAGAAACGGCAACGCAAGAAATCGTGTGTTTGATGGATGTGCCTCTGCTAATCTCT 346
Query 361 CTGTTTTAAGTTCCAGATGCAAGATTCCtttttttGGATCAGCATTTCATGTATCATCCG 420
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 347 CTGTTTTAAGCTCCAGATGCAAGATTCCTTTTTTCGGATCAGCATTTCATGTTTCATCCG 406
Query 421 GTGGACATGATCTCGGCCTCACGAAAGTTTCGGTTGCTGCTGATTATTCTGATTCGGTTC 480
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 407 GTGGACATGACCTCGGCCTCACGAAAGTTTCGGTTGCTGCTGATTATTCGGATTCGGTTC 466
Query 481 CTGATTCATCTTTCTATGGATATCATCCTCTAGAAGATTTGAAGCCGTCCAAAAGAGTCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CTGATTCATCTTTCTATGGATATCATCCTCTAGAAGATTTGAAGCCGTCCAAAAGAGTCC 526
Query 541 AGGAGACAAAGCTCTCTGCTTCTGAAGTTGCAAGGACTACCGTCGAGGCGAACAGCAGTG 600
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 527 AAGAGACAAAACTCTCTGCTTCTGAAGTAGCAAGGACTACCGTCGAGGCGAACAGCAGTG 586
Query 601 CTGTGCTGGTGTTTCCTGGAGCTATTCACTGTGAACCACACGATCATAATTCATGGTCCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTGTGCTGGTGTTTCCTGGAGCTATTCACTGTGAACCACACGATCATAATTCATGGTCCG 646
Query 661 AATTTAAGTATGTCATTGATGATTATGGAGATATCTTTTTTGAAATTCCTGATGATGAGA 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 647 AATTTAAGTATGTCATTGATGATTATGGAGATATCTTTTTCGAAATTCCTGATGATGAGA 706
Query 721 ACATCTTAGAAGATCCTGGAGCTAGTAATCCAGTGAAAGCCTTTTTTGGAATGGATGTCC 780
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 707 ACATCTTAGAAGATCCTGGAGCTAGTAACCCAGTGAAAGCCTTTTTTGGAATGGATGTCC 766
Query 781 CGCGATACGAAAACACACGGCACCATGAGGAATATAACATTTCAGACATTGGTAATCTTG 840
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 767 CGCGATACGAAAACACACGGCTCCATGAGGAATATAACGTTTCAGACATTGGTAATCTTG 826
Query 841 ACCAAATTATTTTTGATGACCATTATTTCGAGATTATGGATTCTGAAGCTAGAGATATTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACCAAATTATTTTTGATGACCATTATTTCGAGATTATGGATTCTGAAGCTAGAGATATTC 886
Query 901 CGATAGATTGGGGAATGCCTGACACCTCCAACGGTGTTCATCCTATTTACTTTGCCAAAC 960
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 887 CGATAGATTGGGGAATGCCTGACACCTCCAACGGGGTTCATCCTATTTACTTTGCCAAAC 946
Query 961 ACCTGTCGAAGGCCATCAGCATGGACTATGACAGGAAAATGGACTATCCATCTAATGGTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ACCTGTCGAAGGCCATCAGCATGGACTATGACAGGAAAATGGACTATCCATCTAATGGTG 1006
Query 1021 TATCCATACTTGGATGCCTTAGGCCCGCTTTCCTTGACGAGGAATCTTATATAAGAAGAT 1080
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1007 TATCCATACTCGGATGCCTTAGGCCTGCTTTCCTTGACGAGGAATCCTATATAAGAAGAT 1066
Query 1081 TATTTCTTTCGGAAGATAGAGATGACTATAGCTGGGAGGTTCAAGGTGATGATAATCCAA 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TATTTCTCTCGGAAGATAGAGATGACTATAGCTGGGAGGTTCAAGGTGATGATAATCCAA 1126
Query 1141 TCACTAGTTCCAGAC-GTGACGAGAATGATATGAGTTCAAGTCTATATAGATTAGAGATT 1199
|||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1127 ACACTAGTTCCAGACAG-GACGAGAACGATATGAGTTCAAGTCTATATAGACTAGAGATT 1185
Query 1200 GTGGGAATAGAGCTTCTCTCCCTCTATGGAGCAGAGTCTTCTATAAGTTTGCAAGATTTT 1259
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GTGGGAATAGAGCTACTATCCCTCTATGGAGCAGAGTCTTCTATAAGTTTGCAAGATTTT 1245
Query 1260 CAAGATGCTGAACCAGACATCCTAGTGCACTCTACT-TCTGCAATCATCGAGCGCTTCAA 1318
|||||||| ||||||||||| ||||||||||||| | ||||||||||| |||||||||||
Sbjct 1246 CAAGATGCCGAACCAGACATTCTAGTGCACTCTA-TGTCTGCAATCATAGAGCGCTTCAA 1304
Query 1319 CAACAGGGGGATTAACTCCAGCATTGCACTTAAAGCTCTCTGCAAAAAGAAGGGTCTTCA 1378
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1305 TAACAGGGGGATTAACTCGAGCATTGCCCTTAAAGCTCTCTGCAAAAAGAAGGGTCTTCA 1364
Query 1379 TGCAGAGGAAGCTAACCTGATCAGTGTTGATAGTCTTGGTATGGATGTGAGAGTTTTCGC 1438
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1365 TGCAGAGGAAGCTAACCTGATCAGTGTTGATAGTCTCGGTATGGATGTGAGAGTTTTCGC 1424
Query 1439 AGGTGCACAAGTCCAAACTCACCGTTTCCCTTTCAAAACCAGGGCTACAACAGAAATGGC 1498
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1425 AGGTGCACAAGTCCAAACTCACCGGTTCCCTTTCAAAACCAGGGCTACAACAGAAATGGC 1484
Query 1499 AGCAGAGAAGAAGATCCACCAGCTACTGTTCCCTCGTTCACGCAGAAGGAAGTTGAAGTG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1485 AGCAGAGAAGAAGATCCACCAGCTACTGTTCCCTCGTTCACGCAGAAGGAAACTGAAGTC 1544
Query 1559 TCATGACGAGAGTTTGAAGGATGCATTTCGTTaaaaaaaCC-G-TTGCTGATCAAAGTCA 1616
|||||||||||||||||| ||||||| ||||| ||||||| | || ||||||||| |||
Sbjct 1545 TCATGACGAGAGTTTGAATGATGCATATCGTT--AAAAACCTGCTTACTGATCAAAATCA 1602
Query 1617 CTAAA-CTAGAAAATGAGGAAACAGAGAAGAAGCTGTTTTGCCACTGGATCTGTCTAGTA 1675
| ||| | || | | || ||||||||||| |||||||| |||||| | | | |
Sbjct 1603 CGAAACCAAG-ATACAAGTAAACAGAGAAGGAGCTGTTTAGCCACT-G----G---A-T- 1651
Query 1676 CTTATACGAGTTCTTTGGCCTGGCGATTGTGTACATAACGATGAGCTTTAAAGTGACTGT 1735
| | | || ||| | | ||||||||||||||||||||||| || | || ||
Sbjct 1652 C---T----G-TC--TGG--T-AC--TTGTGTACATAACGATGAGCTTTCAATTCACCGT 1696
Query 1736 TCTAGAACTGTGTGGAGATTCAGCCTCTTACGTTTTAGTAGTAAGT---A-AA-C--TAA 1788
|||| | | ||||||||| ||||||||||| || ||||||||||| | || | ||
Sbjct 1697 ACTAG-AGT-TGTGGAGATGCAGCCTCTTACATTGTAGTAGTAAGTAGAATAATCAATAC 1754
Query 1789 ATTAAACCCAAGAATAAAGAGAAGTTGATACAATTGAAGTAACTTCTATAA-TAGTCCAA 1847
|||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| ||
Sbjct 1755 ATTAAACCTAAGAATAAAGAGAAGTTGATACATTTGAAGTAACTTCTCTAACAAGTCGAA 1814
Query 1848 TGTTGTTCTTACAATGTAAATCTTCGTTTATCTTTACAATCAAGATCAAATAAAGCCCTT 1907
||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1815 TGTTGTTCTTACACGGTAAATCTTCATTTGTTTTTACAATCAAGATCAAATAAAGCCCTT 1874
Query 1908 TTTCTCACTCTTTACAGTCACCAACGGTGTCCTTACTTTTCTCCACTCAAAAGATCCTTT 1967
|||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct 1875 TTTCTCTCTCTTTACAGTTACCAATTGTTTCCTTACTTTTCTCCACTCAAAAG-----TT 1929
Query 1968 ATTTTTGCTGGATGCAATAATATAATATCACACAGTCGATGGA-ATTGACAAAAACCTAT 2026
|||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 1930 CTTTTTGCTGGATGCAATAATATAATATCACACAGTCAAT-GACATTGACAAAAACCTGT 1988
Query 2027 GTGGTTAGGTTCCCGGCTCATCATCCTCACCTAACAACTTCCTCTGCATAGCCGCCTCGT 2086
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 1989 GTGGTTAGGTTCCCGGCTCATCATCCTCATCTAACAACTTCCTCTGCACAGCCTCCTCGT 2048
Query 2087 CGCCCACTTCTTCAAATCTGTGTTCCTCTTGATCTTTCTCCTTCCTGAG-AAGCATCCAA 2145
|| |||||||| || ||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 2049 CGACCACTTCTCCAGTTCTGTGTTCCTCTTGATCTTTCTCCTTCCTGAGAAAG-ATACAA 2107
Query 2146 CATGGGAAAAATGGAGAAGAATAAT-AAGTTCATTGATGGATTGTTTATTGTACTTGAA- 2203
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 2108 AATGGGAAAAATGGAGAAGAATAATAAAGTTCATTGATGGATTGTATATTATACTTGAAG 2167
Query 2204 AAATGATTAGAAAAGACTGTACATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAA 2263
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2168 AAA-GATTAAAAAAGACTGTACATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAA 2226
Query 2264 TGCCAAGAAGTAGAGCCAATCAACCTGGTATTAACATCATTAGCTGATTTCTACAGATAG 2323
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2227 TGCCAAGAAGTAGAGCCAATCAACCTGGTATTAACATCATTAGCTGCTTTCTACAGATAG 2286
Query 2324 AAAATGTAAGGGTTTCCTGATGTTTGATATTCAAAGTGAGCAGACCTTCTCGTGGTAACC 2383
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2287 AAAATGTAAGAGTTTCCTGATGTTTGATATACAAAGTGAGCAGACCTTCTCGTGGTAACC 2346
Query 2384 AAAAGTGCGGATCAAAACAGCCCACATATCTGATGTG 2420
||||||||||||||||||||||||||| |||||||||
Sbjct 2347 AAAAGTGCGGATCAAAACAGCCCACATGTCTGATGTG 2383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5